RNA–Protein interactions for RNA: ENST00000635776.1

SCN1A-210, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 10,107 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-210ENST00000635776 NISCHQ9Y2I1 1504 aa9.26□□□□□ -0.93
SCN1A-210ENST00000635776 CCDC180Q9P1Z9 1646 aa7.93□□□□□ -1.14
SCN1A-210ENST00000635776 DCAF8L2P0C7V8 631 aa7.85□□□□□ -1.15
SCN1A-210ENST00000635776 ZCCHC6Q5VYS8 1495 aaKnown RBP7.8□□□□□ -1.16
SCN1A-210ENST00000635776 SHROOM4Q9ULL8 1493 aa7.72□□□□□ -1.17
SCN1A-210ENST00000635776 DCAF1Q9Y4B6 1507 aa7.72□□□□□ -1.17
SCN1A-210ENST00000635776 SUPT5HO00267 1087 aaKnown RBP7.68□□□□□ -1.18
SCN1A-210ENST00000635776 MYO15BQ96JP2 1530 aa7.58□□□□□ -1.2
SCN1A-210ENST00000635776 NACADO15069 1562 aa7.46□□□□□ -1.21
SCN1A-210ENST00000635776 ABCC9O60706 1549 aa7.4□□□□□ -1.23
SCN1A-210ENST00000635776 CHIC1Q5VXU3 224 aa7.37□□□□□ -1.23
SCN1A-210ENST00000635776 RB1CC1Q8TDY2 1594 aa7.37□□□□□ -1.23
SCN1A-210ENST00000635776 TRIM41Q8WV44 630 aa7.3□□□□□ -1.24
SCN1A-210ENST00000635776 SCRIBQ14160 1630 aa7.29□□□□□ -1.24
SCN1A-210ENST00000635776 RSF1Q96T23 1441 aaPredicted RBP7.27□□□□□ -1.25
SCN1A-210ENST00000635776 BAZ1AQ9NRL2 1556 aaPredicted RBP7.22□□□□□ -1.25
SCN1A-210ENST00000635776 ZEB1P37275 1124 aaPredicted RBP7.15□□□□□ -1.27
SCN1A-210ENST00000635776 TRIM26Q12899 539 aaPredicted RBP7.11□□□□□ -1.27
SCN1A-210ENST00000635776 EEA1Q15075 1411 aa7.1□□□□□ -1.27
SCN1A-210ENST00000635776 CECR2Q9BXF3 1484 aa7.09□□□□□ -1.27
SCN1A-210ENST00000635776 MROH2BQ7Z745 1585 aa7.08□□□□□ -1.28
SCN1A-210ENST00000635776 FAM9AQ8IZU1 332 aaPredicted RBP7.07□□□□□ -1.28
SCN1A-210ENST00000635776 PCGF6Q9BYE7 350 aa7.06□□□□□ -1.28
SCN1A-210ENST00000635776 TOP2AP11388 1531 aaKnown RBP7.05□□□□□ -1.28
SCN1A-210ENST00000635776 APLP2Q06481 763 aa7.05□□□□□ -1.28
SCN1A-210ENST00000635776 PABPN1Q86U42 306 aaKnown RBP eCLIP7.04□□□□□ -1.28
SCN1A-210ENST00000635776 HRCP23327 699 aa7.03□□□□□ -1.28
SCN1A-210ENST00000635776 SMARCA2P51531 1590 aa7.02□□□□□ -1.29
SCN1A-210ENST00000635776 LOC105371045A0A1W2PR82 267 aa7.02□□□□□ -1.29
SCN1A-210ENST00000635776 SMARCA4P51532 1647 aa7.01□□□□□ -1.29
SCN1A-210ENST00000635776 CSRNP3Q8WYN3 585 aa6.99□□□□□ -1.29
SCN1A-210ENST00000635776 BAZ1BQ9UIG0 1483 aaKnown RBP6.99□□□□□ -1.29
SCN1A-210ENST00000635776 UBTFP17480 764 aaKnown RBP6.99□□□□□ -1.29
SCN1A-210ENST00000635776 CCDC88BA6NC98 1476 aa6.96□□□□□ -1.3
SCN1A-210ENST00000635776 WRNQ14191 1432 aaPredicted RBP eCLIP6.96□□□□□ -1.3
SCN1A-210ENST00000635776 WIZO95785 1651 aa6.94□□□□□ -1.3
SCN1A-210ENST00000635776 ATAD2BQ9ULI0 1458 aa6.93□□□□□ -1.3
SCN1A-210ENST00000635776 TNIKQ9UKE5 1360 aa6.93□□□□□ -1.3
SCN1A-210ENST00000635776 PEG3Q9GZU2 1588 aa6.92□□□□□ -1.3
SCN1A-210ENST00000635776 GOLGA3Q08378 1498 aa6.91□□□□□ -1.3
SCN1A-210ENST00000635776 CEP164Q9UPV0 1460 aa6.9□□□□□ -1.3
SCN1A-210ENST00000635776 NCAPD3P42695 1498 aa6.9□□□□□ -1.31
SCN1A-210ENST00000635776 EHMT2Q96KQ7 1210 aa6.89□□□□□ -1.31
SCN1A-210ENST00000635776 BICRAQ9NZM4 1560 aa6.87□□□□□ -1.31
SCN1A-210ENST00000635776 HMGXB3Q12766 1538 aa6.86□□□□□ -1.31
SCN1A-210ENST00000635776 CCER1Q8TC90 406 aaPredicted RBP6.85□□□□□ -1.31
SCN1A-210ENST00000635776 CEP162Q5TB80 1403 aa6.84□□□□□ -1.31
SCN1A-210ENST00000635776 KIF27Q86VH2 1401 aa6.83□□□□□ -1.32
SCN1A-210ENST00000635776 CLIP1P30622 1438 aa6.81□□□□□ -1.32
SCN1A-210ENST00000635776 EIF4G1Q04637 1599 aaKnown RBP6.79□□□□□ -1.32
SCN1A-210ENST00000635776 CADPSQ9ULU8 1353 aa6.79□□□□□ -1.32
SCN1A-210ENST00000635776 SOGA1O94964 1423 aa6.78□□□□□ -1.32
SCN1A-210ENST00000635776 ABCC8Q09428 1581 aa6.78□□□□□ -1.32
SCN1A-210ENST00000635776 CFTRP13569 1480 aa6.76□□□□□ -1.33
SCN1A-210ENST00000635776 VPS8Q8N3P4 1428 aa6.75□□□□□ -1.33
SCN1A-210ENST00000635776 UNC13AQ9UPW8 1703 aa6.74□□□□□ -1.33
SCN1A-210ENST00000635776 KIF21BO75037 1637 aa6.74□□□□□ -1.33
SCN1A-210ENST00000635776 ERICH3Q5RHP9 1530 aa6.73□□□□□ -1.33
SCN1A-210ENST00000635776 ACIN1Q9UKV3 1341 aaKnown RBP6.72□□□□□ -1.33
SCN1A-210ENST00000635776 CLSPNQ9HAW4 1339 aa6.72□□□□□ -1.33
SCN1A-210ENST00000635776 PDS5BQ9NTI5 1447 aa6.72□□□□□ -1.33
SCN1A-210ENST00000635776 TOP2BQ02880 1626 aa6.71□□□□□ -1.33
SCN1A-210ENST00000635776 CENPBP07199 599 aaPredicted RBP6.71□□□□□ -1.33
SCN1A-210ENST00000635776 FHAD1B1AJZ9 1412 aa6.7□□□□□ -1.34
SCN1A-210ENST00000635776 RANGAP1P46060 587 aaPredicted RBP6.7□□□□□ -1.34
SCN1A-210ENST00000635776 CUX2O14529 1486 aa6.68□□□□□ -1.34
SCN1A-210ENST00000635776 PPARGC1BQ86YN6 1023 aaKnown RBP6.68□□□□□ -1.34
SCN1A-210ENST00000635776 CARMIL1Q5VZK9 1371 aa6.68□□□□□ -1.34
SCN1A-210ENST00000635776 TTBK1Q5TCY1 1321 aaPredicted RBP6.68□□□□□ -1.34
SCN1A-210ENST00000635776 PELP1Q8IZL8 1130 aaKnown RBP6.68□□□□□ -1.34
SCN1A-210ENST00000635776 PRXQ9BXM0 1461 aa6.67□□□□□ -1.34
SCN1A-210ENST00000635776 RAPGEF2Q9Y4G8 1499 aa6.67□□□□□ -1.34
SCN1A-210ENST00000635776 SYNJ1O43426 1573 aa6.67□□□□□ -1.34
SCN1A-210ENST00000635776 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.66□□□□□ -1.34
SCN1A-210ENST00000635776 HNRNPUL2Q1KMD3 747 aaKnown RBP6.65□□□□□ -1.34
SCN1A-210ENST00000635776 FANCD2Q9BXW9 1451 aa6.65□□□□□ -1.34
SCN1A-210ENST00000635776 BIVM-ERCC5R4GMW8 1640 aa6.65□□□□□ -1.35
SCN1A-210ENST00000635776 ATP1B4Q9UN42 357 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-210ENST00000635776 RUSC2Q8N2Y8 1516 aa6.64□□□□□ -1.35
SCN1A-210ENST00000635776 CDK11AQ9UQ88 783 aaPredicted RBP6.62□□□□□ -1.35
SCN1A-210ENST00000635776 IGF1RP08069 1367 aa6.62□□□□□ -1.35
SCN1A-210ENST00000635776 FMN1Q68DA7 1419 aa6.62□□□□□ -1.35
SCN1A-210ENST00000635776 ZNF316A6NFI3 1004 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-210ENST00000635776 CUX1P39880 1505 aa6.61□□□□□ -1.35
SCN1A-210ENST00000635776 FGD5Q6ZNL6 1462 aa6.61□□□□□ -1.35
SCN1A-210ENST00000635776 TIMELESSQ9UNS1 1208 aa6.61□□□□□ -1.35
SCN1A-210ENST00000635776 LAMC3Q9Y6N6 1575 aa6.6□□□□□ -1.35
SCN1A-210ENST00000635776 CC2D2AQ9P2K1 1620 aa6.6□□□□□ -1.35
SCN1A-210ENST00000635776 DIEXFQ68CQ4 756 aaKnown RBP6.59□□□□□ -1.35
SCN1A-210ENST00000635776 DNMBPQ6XZF7 1577 aa6.59□□□□□ -1.35
SCN1A-210ENST00000635776 MAP3K1Q13233 1512 aa6.58□□□□□ -1.36
SCN1A-210ENST00000635776 CCNB3Q8WWL7 1395 aa6.58□□□□□ -1.36
SCN1A-210ENST00000635776 ABCA10Q8WWZ4 1543 aa6.58□□□□□ -1.36
SCN1A-210ENST00000635776 EFCAB5A4FU69 1503 aa6.58□□□□□ -1.36
SCN1A-210ENST00000635776 MTUS2Q5JR59 1369 aa6.57□□□□□ -1.36
SCN1A-210ENST00000635776 FAM50AQ14320 339 aaKnown RBP6.56□□□□□ -1.36
SCN1A-210ENST00000635776 TOPBP1Q92547 1522 aa6.55□□□□□ -1.36
SCN1A-210ENST00000635776 AQRO60306 1485 aaKnown RBP eCLIP6.53□□□□□ -1.36
SCN1A-210ENST00000635776 POLA1P09884 1462 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-210ENST00000635776 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms