RNA–Protein interactions for RNA: ENST00000621870.4

GGA3-223, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best)

Gene GGA3, Length 4,034 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-223ENST00000621870 C10orf95Q9H7T3 257 aa4.55□□□□□ -1.68
GGA3-223ENST00000621870 KIAA1109Q2LD37 5005 aa4.54□□□□□ -1.68
GGA3-223ENST00000621870 FAT1Q14517 4588 aa4.53□□□□□ -1.68
GGA3-223ENST00000621870 DNAH5Q8TE73 4624 aa4.52□□□□□ -1.69
GGA3-223ENST00000621870 FRAS1Q86XX4 4008 aa4.5□□□□□ -1.69
GGA3-223ENST00000621870 HYDINQ4G0P3 5121 aa4.5□□□□□ -1.69
GGA3-223ENST00000621870 KMT2CQ8NEZ4 4911 aaKnown RBP4.49□□□□□ -1.69
GGA3-223ENST00000621870 KRTAP10-4P60372 401 aaPredicted RBP4.47□□□□□ -1.69
GGA3-223ENST00000621870 PP632Q6XCG6 107 aa4.46□□□□□ -1.7
GGA3-223ENST00000621870 KRTAP3-1Q9BYR8 98 aa4.46□□□□□ -1.7
GGA3-223ENST00000621870 RYR3Q15413 4870 aa4.45□□□□□ -1.7
GGA3-223ENST00000621870 RYR1P21817 5038 aa4.45□□□□□ -1.7
GGA3-223ENST00000621870 VPS13DQ5THJ4 4388 aa4.42□□□□□ -1.7
GGA3-223ENST00000621870 DYNC1H1Q14204 4646 aaKnown RBP4.42□□□□□ -1.7
GGA3-223ENST00000621870 DYNC2H1Q8NCM8 4307 aaKnown RBP4.41□□□□□ -1.7
GGA3-223ENST00000621870 LRP1BQ9NZR2 4599 aa4.4□□□□□ -1.7
GGA3-223ENST00000621870 HECTD4Q9Y4D8 3996 aa4.39□□□□□ -1.71
GGA3-223ENST00000621870 DNAH8Q96JB1 4490 aa4.38□□□□□ -1.71
GGA3-223ENST00000621870 SACSQ9NZJ4 4579 aa4.38□□□□□ -1.71
GGA3-223ENST00000621870 DNAH17Q9UFH2 4485 aa4.37□□□□□ -1.71
GGA3-223ENST00000621870 KRTAP12-2P59991 146 aa4.36□□□□□ -1.71
GGA3-223ENST00000621870 DNAH2Q9P225 4427 aa4.34□□□□□ -1.71
GGA3-223ENST00000621870 PKHD1P08F94 4074 aa4.33□□□□□ -1.72
GGA3-223ENST00000621870 MYCBP2O75592 4640 aa4.33□□□□□ -1.72
GGA3-223ENST00000621870 FAT3Q8TDW7 4589 aa4.32□□□□□ -1.72
GGA3-223ENST00000621870 KRTAP12-1P59990 96 aa4.32□□□□□ -1.72
GGA3-223ENST00000621870 VPS13BQ7Z7G8 4022 aa4.31□□□□□ -1.72
GGA3-223ENST00000621870 DNAH6Q9C0G6 4158 aa4.31□□□□□ -1.72
GGA3-223ENST00000621870 ALMS1Q8TCU4 4167 aa4.3□□□□□ -1.72
GGA3-223ENST00000621870 RYR2Q92736 4967 aa4.3□□□□□ -1.72
GGA3-223ENST00000621870 APOBP04114 4563 aaKnown RBP4.28□□□□□ -1.72
GGA3-223ENST00000621870 LRP1Q07954 4544 aaKnown RBP4.28□□□□□ -1.72
GGA3-223ENST00000621870 KRTAP10-6P60371 365 aaPredicted RBP4.28□□□□□ -1.72
GGA3-223ENST00000621870 KRTAP13-4Q3LI77 160 aa4.26□□□□□ -1.73
GGA3-223ENST00000621870 EPPK1P58107 5090 aaKnown RBP4.26□□□□□ -1.73
GGA3-223ENST00000621870 KRTAP17-1Q9BYP8 105 aa4.24□□□□□ -1.73
GGA3-223ENST00000621870 FAT2Q9NYQ8 4349 aa4.24□□□□□ -1.73
GGA3-223ENST00000621870 HERC2O95714 4834 aa4.24□□□□□ -1.73
GGA3-223ENST00000621870 KRTAP3-3Q9BYR6 98 aa4.19□□□□□ -1.74
GGA3-223ENST00000621870 KRTAP3-2Q9BYR7 98 aa4.14□□□□□ -1.75
GGA3-223ENST00000621870 PKD1P98161 4303 aa4.14□□□□□ -1.75
GGA3-223ENST00000621870 KRTAP15-1Q3LI76 137 aa4.13□□□□□ -1.75
GGA3-223ENST00000621870 BIRC6Q9NR09 4857 aa4.11□□□□□ -1.75
GGA3-223ENST00000621870 LRP2P98164 4655 aa4.09□□□□□ -1.75
GGA3-223ENST00000621870 PCLOQ9Y6V0 5065 aa4.08□□□□□ -1.76
GGA3-223ENST00000621870 HSPG2P98160 4391 aa4.07□□□□□ -1.76
GGA3-223ENST00000621870 KRTAP4-1Q9BYQ7 146 aa4.06□□□□□ -1.76
GGA3-223ENST00000621870 ABCA13Q86UQ4 5058 aa4.06□□□□□ -1.76
GGA3-223ENST00000621870 LORP23490 312 aaPredicted RBP4.04□□□□□ -1.76
GGA3-223ENST00000621870 KRTAP10-12P60413 245 aa4.03□□□□□ -1.76
GGA3-223ENST00000621870 HERC1Q15751 4861 aa4□□□□□ -1.77
GGA3-223ENST00000621870 CRCT1Q9UGL9 99 aa3.98□□□□□ -1.77
GGA3-223ENST00000621870 MT1HP80294 61 aa3.94□□□□□ -1.78
GGA3-223ENST00000621870 RNF213Q63HN8 5207 aa3.94□□□□□ -1.78
GGA3-223ENST00000621870 LPAP08519 4548 aa3.93□□□□□ -1.78
GGA3-223ENST00000621870 KRTAP12-3P60328 96 aa3.9□□□□□ -1.79
GGA3-223ENST00000621870 UBR4Q5T4S7 5183 aa3.89□□□□□ -1.79
GGA3-223ENST00000621870 KRTAP23-1A1A580 65 aa3.88□□□□□ -1.79
GGA3-223ENST00000621870 MT2AP02795 61 aa3.88□□□□□ -1.79
GGA3-223ENST00000621870 PKHD1L1Q86WI1 4243 aa3.88□□□□□ -1.79
GGA3-223ENST00000621870 FSIP2Q5CZC0 6907 aa3.87□□□□□ -1.79
GGA3-223ENST00000621870 LCE3AQ5TA76 89 aa3.85□□□□□ -1.79
GGA3-223ENST00000621870 KRTAP8-1Q8IUC2 63 aa3.85□□□□□ -1.79
GGA3-223ENST00000621870 MUC2Q02817 5179 aa3.85□□□□□ -1.79
GGA3-223ENST00000621870 MT1FP04733 61 aa3.82□□□□□ -1.8
GGA3-223ENST00000621870 TNXBP22105 4242 aa3.76□□□□□ -1.81
GGA3-223ENST00000621870 SPRR2GQ9BYE4 73 aa3.75□□□□□ -1.81
GGA3-223ENST00000621870 INE1O15225 51 aa3.73□□□□□ -1.81
GGA3-223ENST00000621870 FAT4Q6V0I7 4981 aa3.73□□□□□ -1.81
GGA3-223ENST00000621870 SPRR2FQ96RM1 72 aa3.67□□□□□ -1.82
GGA3-223ENST00000621870 HMCN2Q8NDA2 5059 aa3.63□□□□□ -1.83
GGA3-223ENST00000621870 SYNE1Q8NF91 8797 aaKnown RBP3.61□□□□□ -1.83
GGA3-223ENST00000621870 KRTAP19-1Q8IUB9 90 aa3.6□□□□□ -1.83
GGA3-223ENST00000621870 KRTAP10-5P60370 271 aa3.55□□□□□ -1.84
GGA3-223ENST00000621870 KRTAP19-5Q3LI72 72 aa3.54□□□□□ -1.84
GGA3-223ENST00000621870 KRTAP9-8Q9BYQ0 159 aa3.53□□□□□ -1.84
GGA3-223ENST00000621870 LCE2CQ5TA81 110 aa3.53□□□□□ -1.85
GGA3-223ENST00000621870 KRTAP19-8Q3LI54 63 aa3.52□□□□□ -1.85
GGA3-223ENST00000621870 KRTAP10-7P60409 375 aaPredicted RBP3.49□□□□□ -1.85
GGA3-223ENST00000621870 MT1BP07438 61 aa3.46□□□□□ -1.86
GGA3-223ENST00000621870 KRTAP9-3Q9BYQ3 159 aa3.43□□□□□ -1.86
GGA3-223ENST00000621870 MT1XP80297 61 aa3.42□□□□□ -1.86
GGA3-223ENST00000621870 MUC17Q685J3 4493 aa3.42□□□□□ -1.86
GGA3-223ENST00000621870 SPRR2EP22531 72 aa3.4□□□□□ -1.86
GGA3-223ENST00000621870 SPRR2BP35325 72 aa3.4□□□□□ -1.86
GGA3-223ENST00000621870 SPRR2AP35326 72 aa3.4□□□□□ -1.86
GGA3-223ENST00000621870 KRTAP19-2Q3LHN2 52 aa3.4□□□□□ -1.86
GGA3-223ENST00000621870 KRTAP4-8A0A0G2JLE6 195 aa3.4□□□□□ -1.87
GGA3-223ENST00000621870 KRTAP4-8Q9BYQ9 185 aa3.4□□□□□ -1.87
GGA3-223ENST00000621870 USH2AO75445 5202 aa3.38□□□□□ -1.87
GGA3-223ENST00000621870 LCE3CQ5T5A8 94 aa3.37□□□□□ -1.87
GGA3-223ENST00000621870 SPRR5A0A1B0GTR4 108 aa3.36□□□□□ -1.87
GGA3-223ENST00000621870 FLGP20930 4061 aaPredicted RBP3.36□□□□□ -1.87
GGA3-223ENST00000621870 LCE2BO14633 110 aa3.35□□□□□ -1.87
GGA3-223ENST00000621870 OBSCNQ5VST9 7968 aa3.31□□□□□ -1.88
GGA3-223ENST00000621870 LCE2AQ5TA79 106 aaPredicted RBP3.3□□□□□ -1.88
GGA3-223ENST00000621870 LCE2DQ5TA82 110 aaPredicted RBP3.3□□□□□ -1.88
GGA3-223ENST00000621870 SPRR2DP22532 72 aa3.28□□□□□ -1.88
GGA3-223ENST00000621870 KRTAP9-2Q9BYQ4 174 aa3.28□□□□□ -1.88
GGA3-223ENST00000621870 KRTAP19-4Q3LI73 84 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms