RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 A0A1B0GVY2 172 aa6.34□□□□□ -1.39
LIG1-221ENST00000613670 KRTAP12-2P59991 146 aa6.33□□□□□ -1.4
LIG1-221ENST00000613670 VPS13BQ7Z7G8 4022 aa6.33□□□□□ -1.4
LIG1-221ENST00000613670 CAMK2N1Q7Z7J9 78 aa6.33□□□□□ -1.4
LIG1-221ENST00000613670 DYNC2H1Q8NCM8 4307 aaKnown RBP6.32□□□□□ -1.4
LIG1-221ENST00000613670 J3QL48 77 aa6.3□□□□□ -1.4
LIG1-221ENST00000613670 KRTAP3-3Q9BYR6 98 aa6.3□□□□□ -1.4
LIG1-221ENST00000613670 KRTAP10-4P60372 401 aaPredicted RBP6.27□□□□□ -1.41
LIG1-221ENST00000613670 KRTAP3-2Q9BYR7 98 aa6.26□□□□□ -1.41
LIG1-221ENST00000613670 KRTAP12-1P59990 96 aa6.23□□□□□ -1.41
LIG1-221ENST00000613670 DYNC1H1Q14204 4646 aaKnown RBP6.22□□□□□ -1.41
LIG1-221ENST00000613670 KRTAP21-3Q3LHN1 58 aa6.21□□□□□ -1.42
LIG1-221ENST00000613670 LUZP6Q538Z0 58 aa6.21□□□□□ -1.42
LIG1-221ENST00000613670 MYCBP2O75592 4640 aa6.2□□□□□ -1.42
LIG1-221ENST00000613670 HYDINQ4G0P3 5121 aa6.19□□□□□ -1.42
LIG1-221ENST00000613670 SEC61BP60468 96 aaKnown RBP6.18□□□□□ -1.42
LIG1-221ENST00000613670 SACSQ9NZJ4 4579 aa6.12□□□□□ -1.43
LIG1-221ENST00000613670 PKHD1P08F94 4074 aa6.11□□□□□ -1.43
LIG1-221ENST00000613670 PLAC4Q8WY50 150 aa6.06□□□□□ -1.44
LIG1-221ENST00000613670 LRP1Q07954 4544 aaKnown RBP6.06□□□□□ -1.44
LIG1-221ENST00000613670 KRTAP15-1Q3LI76 137 aa6.01□□□□□ -1.45
LIG1-221ENST00000613670 FAT2Q9NYQ8 4349 aa6□□□□□ -1.45
LIG1-221ENST00000613670 MT1HL1P0DM35 61 aa6□□□□□ -1.45
LIG1-221ENST00000613670 PKD1P98161 4303 aa5.98□□□□□ -1.45
LIG1-221ENST00000613670 APOBP04114 4563 aaKnown RBP5.97□□□□□ -1.45
LIG1-221ENST00000613670 A0A0A0MQY5 61 aa5.95□□□□□ -1.46
LIG1-221ENST00000613670 FAT3Q8TDW7 4589 aa5.94□□□□□ -1.46
LIG1-221ENST00000613670 M0R2T5 61 aa5.93□□□□□ -1.46
LIG1-221ENST00000613670 KIAA1109Q2LD37 5005 aa5.88□□□□□ -1.47
LIG1-221ENST00000613670 LORP23490 312 aaPredicted RBP5.86□□□□□ -1.47
LIG1-221ENST00000613670 TNP1P09430 55 aa5.86□□□□□ -1.47
LIG1-221ENST00000613670 RYR1P21817 5038 aa5.85□□□□□ -1.47
LIG1-221ENST00000613670 PP632Q6XCG6 107 aa5.83□□□□□ -1.48
LIG1-221ENST00000613670 LRP2P98164 4655 aa5.8□□□□□ -1.48
LIG1-221ENST00000613670 HSPG2P98160 4391 aa5.8□□□□□ -1.48
LIG1-221ENST00000613670 KRTAP4-5Q9BYR2 181 aa5.79□□□□□ -1.48
LIG1-221ENST00000613670 KRTAP17-1Q9BYP8 105 aa5.77□□□□□ -1.49
LIG1-221ENST00000613670 RYR3Q15413 4870 aa5.74□□□□□ -1.49
LIG1-221ENST00000613670 KMT2CQ8NEZ4 4911 aaKnown RBP5.72□□□□□ -1.49
LIG1-221ENST00000613670 RYR2Q92736 4967 aa5.7□□□□□ -1.5
LIG1-221ENST00000613670 PKHD1L1Q86WI1 4243 aa5.67□□□□□ -1.5
LIG1-221ENST00000613670 KRTAP4-1Q9BYQ7 146 aa5.64□□□□□ -1.51
LIG1-221ENST00000613670 LPAP08519 4548 aa5.59□□□□□ -1.51
LIG1-221ENST00000613670 TNXBP22105 4242 aa5.56□□□□□ -1.52
LIG1-221ENST00000613670 KRTAP10-10P60014 251 aa5.52□□□□□ -1.53
LIG1-221ENST00000613670 EPPK1P58107 5090 aaKnown RBP5.38□□□□□ -1.55
LIG1-221ENST00000613670 ABCA13Q86UQ4 5058 aa5.37□□□□□ -1.55
LIG1-221ENST00000613670 HERC2O95714 4834 aa5.31□□□□□ -1.56
LIG1-221ENST00000613670 LCE3AQ5TA76 89 aa5.29□□□□□ -1.56
LIG1-221ENST00000613670 MUC2Q02817 5179 aa5.27□□□□□ -1.57
LIG1-221ENST00000613670 KRTAP23-1A1A580 65 aa5.22□□□□□ -1.57
LIG1-221ENST00000613670 KRTAP19-2Q3LHN2 52 aa5.16□□□□□ -1.58
LIG1-221ENST00000613670 SPRR2GQ9BYE4 73 aa5.12□□□□□ -1.59
LIG1-221ENST00000613670 KRTAP10-12P60413 245 aa5.11□□□□□ -1.59
LIG1-221ENST00000613670 KRTAP12-3P60328 96 aa5.1□□□□□ -1.59
LIG1-221ENST00000613670 MUC17Q685J3 4493 aa5.1□□□□□ -1.59
LIG1-221ENST00000613670 KRTAP19-1Q8IUB9 90 aa5.09□□□□□ -1.59
LIG1-221ENST00000613670 PRO2289Q9P1D8 64 aa5.09□□□□□ -1.59
LIG1-221ENST00000613670 FAT4Q6V0I7 4981 aa5.07□□□□□ -1.6
LIG1-221ENST00000613670 MT1FP04733 61 aa5.05□□□□□ -1.6
LIG1-221ENST00000613670 MT1HP80294 61 aa5.05□□□□□ -1.6
LIG1-221ENST00000613670 MT2AP02795 61 aa5.05□□□□□ -1.6
LIG1-221ENST00000613670 FLGP20930 4061 aaPredicted RBP5.01□□□□□ -1.61
LIG1-221ENST00000613670 HERC1Q15751 4861 aa5□□□□□ -1.61
LIG1-221ENST00000613670 SPRR5A0A1B0GTR4 108 aa5□□□□□ -1.61
LIG1-221ENST00000613670 LCE2CQ5TA81 110 aa4.97□□□□□ -1.61
LIG1-221ENST00000613670 BIRC6Q9NR09 4857 aa4.97□□□□□ -1.61
LIG1-221ENST00000613670 RNF213Q63HN8 5207 aa4.95□□□□□ -1.62
LIG1-221ENST00000613670 INE1O15225 51 aa4.95□□□□□ -1.62
LIG1-221ENST00000613670 KRTAP8-1Q8IUC2 63 aa4.93□□□□□ -1.62
LIG1-221ENST00000613670 PCLOQ9Y6V0 5065 aa4.89□□□□□ -1.63
LIG1-221ENST00000613670 KRTAP10-7P60409 375 aaPredicted RBP4.84□□□□□ -1.63
LIG1-221ENST00000613670 MT1XP80297 61 aa4.83□□□□□ -1.64
LIG1-221ENST00000613670 KRTAP9-8Q9BYQ0 159 aa4.82□□□□□ -1.64
LIG1-221ENST00000613670 HMCN2Q8NDA2 5059 aa4.82□□□□□ -1.64
LIG1-221ENST00000613670 KRTAP10-5P60370 271 aa4.82□□□□□ -1.64
LIG1-221ENST00000613670 MT1BP07438 61 aa4.81□□□□□ -1.64
LIG1-221ENST00000613670 KRTAP19-8Q3LI54 63 aa4.8□□□□□ -1.64
LIG1-221ENST00000613670 UBR4Q5T4S7 5183 aa4.8□□□□□ -1.64
LIG1-221ENST00000613670 KRTAP19-5Q3LI72 72 aa4.75□□□□□ -1.65
LIG1-221ENST00000613670 LCE3CQ5T5A8 94 aa4.66□□□□□ -1.66
LIG1-221ENST00000613670 FSIP2Q5CZC0 6907 aa4.63□□□□□ -1.67
LIG1-221ENST00000613670 KRTAP9-3Q9BYQ3 159 aa4.61□□□□□ -1.67
LIG1-221ENST00000613670 KRTAP4-8A0A0G2JLE6 195 aa4.61□□□□□ -1.67
LIG1-221ENST00000613670 KRTAP4-8Q9BYQ9 185 aa4.61□□□□□ -1.67
LIG1-221ENST00000613670 CRCT1Q9UGL9 99 aa4.6□□□□□ -1.67
LIG1-221ENST00000613670 USH2AO75445 5202 aa4.49□□□□□ -1.69
LIG1-221ENST00000613670 KRTAP4-7Q9BYR0 210 aa4.49□□□□□ -1.69
LIG1-221ENST00000613670 LCE2BO14633 110 aa4.48□□□□□ -1.69
LIG1-221ENST00000613670 KMT2DO14686 5537 aa4.47□□□□□ -1.69
LIG1-221ENST00000613670 KRTAP9-6A8MVA2 160 aa4.31□□□□□ -1.72
LIG1-221ENST00000613670 KRTAP19-7Q3SYF9 63 aa4.25□□□□□ -1.73
LIG1-221ENST00000613670 MT1LQ93083 61 aa4.23□□□□□ -1.73
LIG1-221ENST00000613670 MT1GP13640 62 aa4.23□□□□□ -1.73
LIG1-221ENST00000613670 SYNE1Q8NF91 8797 aaKnown RBP4.2□□□□□ -1.74
LIG1-221ENST00000613670 MT1EP04732 61 aa4.19□□□□□ -1.74
LIG1-221ENST00000613670 DSTQ03001 7570 aaKnown RBP4.17□□□□□ -1.74
LIG1-221ENST00000613670 LOC100996750A0A140TA64 210 aa4.16□□□□□ -1.74
LIG1-221ENST00000613670 KRTAP4-3Q9BYR4 195 aa4.16□□□□□ -1.74
LIG1-221ENST00000613670 FCGBPQ9Y6R7 5405 aaPredicted RBP4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 789.5 ms