RNA–Protein interactions for RNA: ENST00000611625.4

CDH1-212, Transcript of cadherin 1, humanhuman

TSL 5 BASIC

Gene CDH1, Length 4,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-212ENST00000611625 DNAH17Q9UFH2 4485 aa5.75□□□□□ -1.49
CDH1-212ENST00000611625 ALMS1Q8TCU4 4167 aa5.72□□□□□ -1.49
CDH1-212ENST00000611625 PRO2289Q9P1D8 64 aa5.69□□□□□ -1.5
CDH1-212ENST00000611625 KRTAP15-1Q3LI76 137 aa5.69□□□□□ -1.5
CDH1-212ENST00000611625 STARD9Q9P2P6 4700 aa5.66□□□□□ -1.5
CDH1-212ENST00000611625 DNHD1Q96M86 4753 aa5.62□□□□□ -1.51
CDH1-212ENST00000611625 DNAH8Q96JB1 4490 aa5.61□□□□□ -1.51
CDH1-212ENST00000611625 KRTAP4-5Q9BYR2 181 aa5.6□□□□□ -1.51
CDH1-212ENST00000611625 DNAH2Q9P225 4427 aa5.59□□□□□ -1.51
CDH1-212ENST00000611625 DNAH3Q8TD57 4116 aa5.56□□□□□ -1.52
CDH1-212ENST00000611625 LRP1BQ9NZR2 4599 aa5.56□□□□□ -1.52
CDH1-212ENST00000611625 DYNC1H1Q14204 4646 aaKnown RBP5.56□□□□□ -1.52
CDH1-212ENST00000611625 FAT1Q14517 4588 aa5.54□□□□□ -1.52
CDH1-212ENST00000611625 LORP23490 312 aaPredicted RBP5.51□□□□□ -1.53
CDH1-212ENST00000611625 PRKDCP78527 4128 aaKnown RBP5.49□□□□□ -1.53
CDH1-212ENST00000611625 DYNC2H1Q8NCM8 4307 aaKnown RBP5.46□□□□□ -1.54
CDH1-212ENST00000611625 ANK2Q01484 3957 aa5.45□□□□□ -1.54
CDH1-212ENST00000611625 SACSQ9NZJ4 4579 aa5.44□□□□□ -1.54
CDH1-212ENST00000611625 KMT2AQ03164 3969 aa5.44□□□□□ -1.54
CDH1-212ENST00000611625 FAT2Q9NYQ8 4349 aa5.35□□□□□ -1.55
CDH1-212ENST00000611625 KRTAP23-1A1A580 65 aa5.35□□□□□ -1.55
CDH1-212ENST00000611625 VPS13BQ7Z7G8 4022 aa5.35□□□□□ -1.55
CDH1-212ENST00000611625 CMYA5Q8N3K9 4069 aa5.34□□□□□ -1.55
CDH1-212ENST00000611625 KRTAP4-1Q9BYQ7 146 aa5.32□□□□□ -1.56
CDH1-212ENST00000611625 RYR1P21817 5038 aa5.31□□□□□ -1.56
CDH1-212ENST00000611625 KRTAP10-12P60413 245 aa5.3□□□□□ -1.56
CDH1-212ENST00000611625 FRAS1Q86XX4 4008 aa5.29□□□□□ -1.56
CDH1-212ENST00000611625 LYSTQ99698 3801 aa5.28□□□□□ -1.56
CDH1-212ENST00000611625 APOBP04114 4563 aaKnown RBP5.28□□□□□ -1.56
CDH1-212ENST00000611625 HECTD4Q9Y4D8 3996 aa5.27□□□□□ -1.57
CDH1-212ENST00000611625 MYCBP2O75592 4640 aa5.26□□□□□ -1.57
CDH1-212ENST00000611625 LCE3AQ5TA76 89 aa5.25□□□□□ -1.57
CDH1-212ENST00000611625 DNAH6Q9C0G6 4158 aa5.23□□□□□ -1.57
CDH1-212ENST00000611625 KRTAP12-3P60328 96 aa5.21□□□□□ -1.58
CDH1-212ENST00000611625 DNAH7Q8WXX0 4024 aa5.2□□□□□ -1.58
CDH1-212ENST00000611625 KIAA1109Q2LD37 5005 aa5.19□□□□□ -1.58
CDH1-212ENST00000611625 INE1O15225 51 aa5.18□□□□□ -1.58
CDH1-212ENST00000611625 LRP1Q07954 4544 aaKnown RBP5.14□□□□□ -1.59
CDH1-212ENST00000611625 KRTAP17-1Q9BYP8 105 aa5.1□□□□□ -1.59
CDH1-212ENST00000611625 RYR3Q15413 4870 aa5.09□□□□□ -1.59
CDH1-212ENST00000611625 FAT3Q8TDW7 4589 aa5.07□□□□□ -1.6
CDH1-212ENST00000611625 SPRR2GQ9BYE4 73 aa5.06□□□□□ -1.6
CDH1-212ENST00000611625 HYDINQ4G0P3 5121 aa5.06□□□□□ -1.6
CDH1-212ENST00000611625 RYR2Q92736 4967 aa5.03□□□□□ -1.6
CDH1-212ENST00000611625 MT1HP80294 61 aa5.03□□□□□ -1.6
CDH1-212ENST00000611625 MT2AP02795 61 aa5.01□□□□□ -1.61
CDH1-212ENST00000611625 PKHD1P08F94 4074 aa4.96□□□□□ -1.62
CDH1-212ENST00000611625 MT1FP04733 61 aa4.94□□□□□ -1.62
CDH1-212ENST00000611625 LRP2P98164 4655 aa4.92□□□□□ -1.62
CDH1-212ENST00000611625 PKD1P98161 4303 aa4.87□□□□□ -1.63
CDH1-212ENST00000611625 CRCT1Q9UGL9 99 aa4.86□□□□□ -1.63
CDH1-212ENST00000611625 KRTAP8-1Q8IUC2 63 aa4.84□□□□□ -1.63
CDH1-212ENST00000611625 KRTAP19-1Q8IUB9 90 aa4.84□□□□□ -1.63
CDH1-212ENST00000611625 HSPG2P98160 4391 aa4.84□□□□□ -1.64
CDH1-212ENST00000611625 HERC2O95714 4834 aa4.79□□□□□ -1.64
CDH1-212ENST00000611625 KMT2CQ8NEZ4 4911 aaKnown RBP4.77□□□□□ -1.65
CDH1-212ENST00000611625 KRTAP19-8Q3LI54 63 aa4.74□□□□□ -1.65
CDH1-212ENST00000611625 PKHD1L1Q86WI1 4243 aa4.74□□□□□ -1.65
CDH1-212ENST00000611625 KRTAP19-5Q3LI72 72 aa4.72□□□□□ -1.65
CDH1-212ENST00000611625 LPAP08519 4548 aa4.67□□□□□ -1.66
CDH1-212ENST00000611625 TNXBP22105 4242 aa4.67□□□□□ -1.66
CDH1-212ENST00000611625 KRTAP10-7P60409 375 aaPredicted RBP4.65□□□□□ -1.66
CDH1-212ENST00000611625 LCE3CQ5T5A8 94 aa4.65□□□□□ -1.66
CDH1-212ENST00000611625 LCE2CQ5TA81 110 aa4.65□□□□□ -1.67
CDH1-212ENST00000611625 SPRR5A0A1B0GTR4 108 aa4.65□□□□□ -1.67
CDH1-212ENST00000611625 MT1XP80297 61 aa4.64□□□□□ -1.67
CDH1-212ENST00000611625 KRTAP19-2Q3LHN2 52 aa4.62□□□□□ -1.67
CDH1-212ENST00000611625 MT1BP07438 61 aa4.62□□□□□ -1.67
CDH1-212ENST00000611625 KRTAP9-8Q9BYQ0 159 aa4.61□□□□□ -1.67
CDH1-212ENST00000611625 KRTAP10-5P60370 271 aa4.61□□□□□ -1.67
CDH1-212ENST00000611625 HERC1Q15751 4861 aa4.59□□□□□ -1.67
CDH1-212ENST00000611625 BIRC6Q9NR09 4857 aa4.58□□□□□ -1.68
CDH1-212ENST00000611625 MUC17Q685J3 4493 aa4.55□□□□□ -1.68
CDH1-212ENST00000611625 PCLOQ9Y6V0 5065 aa4.52□□□□□ -1.69
CDH1-212ENST00000611625 KRTAP19-4Q3LI73 84 aa4.49□□□□□ -1.69
CDH1-212ENST00000611625 FLGP20930 4061 aaPredicted RBP4.47□□□□□ -1.69
CDH1-212ENST00000611625 KRTAP9-3Q9BYQ3 159 aa4.47□□□□□ -1.69
CDH1-212ENST00000611625 ABCA13Q86UQ4 5058 aa4.46□□□□□ -1.7
CDH1-212ENST00000611625 EPPK1P58107 5090 aaKnown RBP4.45□□□□□ -1.7
CDH1-212ENST00000611625 KRTAP4-8A0A0G2JLE6 195 aa4.38□□□□□ -1.71
CDH1-212ENST00000611625 KRTAP4-8Q9BYQ9 185 aa4.38□□□□□ -1.71
CDH1-212ENST00000611625 SPRR2FQ96RM1 72 aa4.37□□□□□ -1.71
CDH1-212ENST00000611625 LCE2BO14633 110 aa4.27□□□□□ -1.73
CDH1-212ENST00000611625 MT1GP13640 62 aa4.21□□□□□ -1.73
CDH1-212ENST00000611625 FAT4Q6V0I7 4981 aa4.21□□□□□ -1.74
CDH1-212ENST00000611625 RNF213Q63HN8 5207 aa4.21□□□□□ -1.74
CDH1-212ENST00000611625 HMCN2Q8NDA2 5059 aa4.2□□□□□ -1.74
CDH1-212ENST00000611625 UBR4Q5T4S7 5183 aa4.18□□□□□ -1.74
CDH1-212ENST00000611625 KRTAP4-7Q9BYR0 210 aa4.18□□□□□ -1.74
CDH1-212ENST00000611625 MT1LQ93083 61 aa4.15□□□□□ -1.74
CDH1-212ENST00000611625 KRTAP12-4P60329 112 aa4.14□□□□□ -1.75
CDH1-212ENST00000611625 LCE3BQ5TA77 95 aa4.14□□□□□ -1.75
CDH1-212ENST00000611625 MT1EP04732 61 aa4.12□□□□□ -1.75
CDH1-212ENST00000611625 MUC2Q02817 5179 aa4.1□□□□□ -1.75
CDH1-212ENST00000611625 KRTAP19-3Q7Z4W3 81 aa4.05□□□□□ -1.76
CDH1-212ENST00000611625 SPRR2EP22531 72 aa4□□□□□ -1.77
CDH1-212ENST00000611625 SPRR2BP35325 72 aa4□□□□□ -1.77
CDH1-212ENST00000611625 SPRR2AP35326 72 aa4□□□□□ -1.77
CDH1-212ENST00000611625 KRTAP19-7Q3SYF9 63 aa3.99□□□□□ -1.77
CDH1-212ENST00000611625 SYNE1Q8NF91 8797 aaKnown RBP3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 118 ms