RNA–Protein interactions for RNA: ENST00000579539.1

DDX42-210, Transcript of DEAD-box helicase 42, humanhuman

TSL 2

Gene DDX42, Length 571 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX42-210ENST00000579539 R4GN34 69 aa2.9□□□□□ -1.95
DDX42-210ENST00000579539 FBN1P35555 2871 aaKnown RBP2.9□□□□□ -1.95
DDX42-210ENST00000579539 ZNF462Q96JM2 2506 aa2.89□□□□□ -1.95
DDX42-210ENST00000579539 J3QKU1 62 aa2.89□□□□□ -1.95
DDX42-210ENST00000579539 LCE3EQ5T5B0 92 aa2.89□□□□□ -1.95
DDX42-210ENST00000579539 DNAH3Q8TD57 4116 aa2.89□□□□□ -1.95
DDX42-210ENST00000579539 FAM208BQ5VWN6 2430 aa2.89□□□□□ -1.95
DDX42-210ENST00000579539 TRRAPQ9Y4A5 3859 aa2.89□□□□□ -1.95
DDX42-210ENST00000579539 NOTCH2Q04721 2471 aa2.88□□□□□ -1.95
DDX42-210ENST00000579539 MAST4O15021 2626 aa2.88□□□□□ -1.95
DDX42-210ENST00000579539 TEP1Q99973 2627 aaKnown RBP2.88□□□□□ -1.95
DDX42-210ENST00000579539 KRTAP12-1P59990 96 aa2.88□□□□□ -1.95
DDX42-210ENST00000579539 LYSTQ99698 3801 aa2.88□□□□□ -1.95
DDX42-210ENST00000579539 DYNC2H1Q8NCM8 4307 aaKnown RBP2.87□□□□□ -1.95
DDX42-210ENST00000579539 ACANP16112 2415 aa2.87□□□□□ -1.95
DDX42-210ENST00000579539 IGSF10Q6WRI0 2623 aa2.87□□□□□ -1.95
DDX42-210ENST00000579539 MEGF8Q7Z7M0 2845 aa2.87□□□□□ -1.95
DDX42-210ENST00000579539 KRTAP13-4Q3LI77 160 aa2.87□□□□□ -1.95
DDX42-210ENST00000579539 DNAH10Q8IVF4 4471 aa2.86□□□□□ -1.95
DDX42-210ENST00000579539 KRTAP12-2P59991 146 aa2.86□□□□□ -1.95
DDX42-210ENST00000579539 FRAS1Q86XX4 4008 aa2.86□□□□□ -1.95
DDX42-210ENST00000579539 CUBNO60494 3623 aa2.86□□□□□ -1.95
DDX42-210ENST00000579539 OBSCNQ5VST9 7968 aa2.85□□□□□ -1.95
DDX42-210ENST00000579539 DNAH17Q9UFH2 4485 aa2.84□□□□□ -1.95
DDX42-210ENST00000579539 NBEAL1Q6ZS30 2694 aa2.84□□□□□ -1.95
DDX42-210ENST00000579539 PRO2289Q9P1D8 64 aa2.84□□□□□ -1.95
DDX42-210ENST00000579539 ANK2Q01484 3957 aa2.83□□□□□ -1.96
DDX42-210ENST00000579539 TGP01266 2768 aa2.83□□□□□ -1.96
DDX42-210ENST00000579539 FASNP49327 2511 aaKnown RBP2.83□□□□□ -1.96
DDX42-210ENST00000579539 DNAH9Q9NYC9 4486 aa2.82□□□□□ -1.96
DDX42-210ENST00000579539 ZNF469Q96JG9 3925 aaPredicted RBP2.82□□□□□ -1.96
DDX42-210ENST00000579539 COL7A1Q02388 2944 aa2.82□□□□□ -1.96
DDX42-210ENST00000579539 INE1O15225 51 aa2.81□□□□□ -1.96
DDX42-210ENST00000579539 TENM1Q9UKZ4 2725 aa2.81□□□□□ -1.96
DDX42-210ENST00000579539 TENM3Q9P273 2699 aa2.8□□□□□ -1.96
DDX42-210ENST00000579539 HUWE1Q7Z6Z7 4374 aaKnown RBP2.8□□□□□ -1.96
DDX42-210ENST00000579539 ATRQ13535 2644 aa2.79□□□□□ -1.96
DDX42-210ENST00000579539 C9orf92A6NGG3 77 aa2.79□□□□□ -1.96
DDX42-210ENST00000579539 FLNBO75369 2602 aaKnown RBP2.78□□□□□ -1.96
DDX42-210ENST00000579539 HECTD4Q9Y4D8 3996 aa2.78□□□□□ -1.96
DDX42-210ENST00000579539 DNAH2Q9P225 4427 aa2.78□□□□□ -1.96
DDX42-210ENST00000579539 ITPR2Q14571 2701 aa2.77□□□□□ -1.97
DDX42-210ENST00000579539 CSMD3Q7Z407 3707 aa2.76□□□□□ -1.97
DDX42-210ENST00000579539 DNAH6Q9C0G6 4158 aa2.75□□□□□ -1.97
DDX42-210ENST00000579539 LCE3AQ5TA76 89 aa2.75□□□□□ -1.97
DDX42-210ENST00000579539 DNAH7Q8WXX0 4024 aa2.74□□□□□ -1.97
DDX42-210ENST00000579539 PRKDCP78527 4128 aaKnown RBP2.74□□□□□ -1.97
DDX42-210ENST00000579539 NSD1Q96L73 2696 aaPredicted RBP2.74□□□□□ -1.97
DDX42-210ENST00000579539 DNAH11Q96DT5 4516 aa2.74□□□□□ -1.97
DDX42-210ENST00000579539 KRTAP10-1P60331 282 aa2.73□□□□□ -1.97
DDX42-210ENST00000579539 KRTAP4-3Q9BYR4 195 aa2.73□□□□□ -1.97
DDX42-210ENST00000579539 SPRR5A0A1B0GTR4 108 aa2.72□□□□□ -1.97
DDX42-210ENST00000579539 COL6A5A8TX70 2615 aa2.72□□□□□ -1.97
DDX42-210ENST00000579539 PLECQ15149 4684 aaKnown RBP2.71□□□□□ -1.98
DDX42-210ENST00000579539 CMYA5Q8N3K9 4069 aa2.71□□□□□ -1.98
DDX42-210ENST00000579539 NOTCH1P46531 2555 aa2.7□□□□□ -1.98
DDX42-210ENST00000579539 FBN3Q75N90 2809 aa2.69□□□□□ -1.98
DDX42-210ENST00000579539 STAB2Q8WWQ8 2551 aa2.68□□□□□ -1.98
DDX42-210ENST00000579539 KRTAP10-8P60410 259 aa2.68□□□□□ -1.98
DDX42-210ENST00000579539 SACSQ9NZJ4 4579 aa2.68□□□□□ -1.98
DDX42-210ENST00000579539 LRP1BQ9NZR2 4599 aa2.66□□□□□ -1.98
DDX42-210ENST00000579539 UBR4Q5T4S7 5183 aa2.66□□□□□ -1.98
DDX42-210ENST00000579539 Q5VSD8 79 aa2.64□□□□□ -1.99
DDX42-210ENST00000579539 STAB1Q9NY15 2570 aa2.64□□□□□ -1.99
DDX42-210ENST00000579539 TNP1P09430 55 aa2.62□□□□□ -1.99
DDX42-210ENST00000579539 DMBT1Q9UGM3 2413 aaPredicted RBP2.62□□□□□ -1.99
DDX42-210ENST00000579539 KMT2AQ03164 3969 aa2.61□□□□□ -1.99
DDX42-210ENST00000579539 DNAH5Q8TE73 4624 aa2.59□□□□□ -1.99
DDX42-210ENST00000579539 MYCBP2O75592 4640 aa2.59□□□□□ -2
DDX42-210ENST00000579539 VPS13BQ7Z7G8 4022 aa2.58□□□□□ -2
DDX42-210ENST00000579539 MGAM2Q2M2H8 2515 aa2.57□□□□□ -2
DDX42-210ENST00000579539 PKHD1L1Q86WI1 4243 aa2.56□□□□□ -2
DDX42-210ENST00000579539 KRTAP5-5Q701N2 237 aaPredicted RBP2.56□□□□□ -2
DDX42-210ENST00000579539 KRTAP10-4P60372 401 aaPredicted RBP2.54□□□□□ -2
DDX42-210ENST00000579539 LRP1Q07954 4544 aaKnown RBP2.54□□□□□ -2
DDX42-210ENST00000579539 APOBP04114 4563 aaKnown RBP2.53□□□□□ -2
DDX42-210ENST00000579539 DYNC1H1Q14204 4646 aaKnown RBP2.53□□□□□ -2
DDX42-210ENST00000579539 PKD1P98161 4303 aa2.52□□□□□ -2.01
DDX42-210ENST00000579539 KRTAP5-2Q701N4 177 aa2.52□□□□□ -2.01
DDX42-210ENST00000579539 PCLOQ9Y6V0 5065 aa2.52□□□□□ -2.01
DDX42-210ENST00000579539 STARD9Q9P2P6 4700 aa2.51□□□□□ -2.01
DDX42-210ENST00000579539 FAT3Q8TDW7 4589 aa2.5□□□□□ -2.01
DDX42-210ENST00000579539 PKHD1P08F94 4074 aa2.5□□□□□ -2.01
DDX42-210ENST00000579539 SMR3BP02814 79 aaPredicted RBP2.48□□□□□ -2.01
DDX42-210ENST00000579539 FAT2Q9NYQ8 4349 aa2.48□□□□□ -2.01
DDX42-210ENST00000579539 HSPG2P98160 4391 aa2.46□□□□□ -2.02
DDX42-210ENST00000579539 LCE3DQ9BYE3 92 aa2.45□□□□□ -2.02
DDX42-210ENST00000579539 TNXBP22105 4242 aa2.44□□□□□ -2.02
DDX42-210ENST00000579539 DNHD1Q96M86 4753 aa2.44□□□□□ -2.02
DDX42-210ENST00000579539 FAT1Q14517 4588 aa2.43□□□□□ -2.02
DDX42-210ENST00000579539 LCE1CQ5T751 118 aa2.4□□□□□ -2.03
DDX42-210ENST00000579539 LCE1BQ5T7P3 118 aa2.4□□□□□ -2.03
DDX42-210ENST00000579539 KRTAP10-10P60014 251 aa2.38□□□□□ -2.03
DDX42-210ENST00000579539 KRTAP8-1Q8IUC2 63 aa2.35□□□□□ -2.03
DDX42-210ENST00000579539 KIAA1109Q2LD37 5005 aa2.34□□□□□ -2.03
DDX42-210ENST00000579539 RYR1P21817 5038 aa2.33□□□□□ -2.04
DDX42-210ENST00000579539 FLGP20930 4061 aaPredicted RBP2.29□□□□□ -2.04
DDX42-210ENST00000579539 MT1HL1P0DM35 61 aa2.29□□□□□ -2.04
DDX42-210ENST00000579539 KRTAP6-3Q3LI67 103 aa2.27□□□□□ -2.05
DDX42-210ENST00000579539 SPRR2GQ9BYE4 73 aa2.26□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms