RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 VPS13DQ5THJ4 4388 aa2.63□□□□□ -1.99
VPS35P1-201ENST00000563400 SPRR1BP22528 89 aa2.63□□□□□ -1.99
VPS35P1-201ENST00000563400 LCE3CQ5T5A8 94 aa2.63□□□□□ -1.99
VPS35P1-201ENST00000563400 IGLV5-48A0A075B6I7 105 aa2.62□□□□□ -1.99
VPS35P1-201ENST00000563400 Q6ZQY7 126 aa2.62□□□□□ -1.99
VPS35P1-201ENST00000563400 DNAH1Q9P2D7 4330 aa2.62□□□□□ -1.99
VPS35P1-201ENST00000563400 KRTAP13-1Q8IUC0 172 aa2.61□□□□□ -1.99
VPS35P1-201ENST00000563400 DNAH6Q9C0G6 4158 aa2.6□□□□□ -1.99
VPS35P1-201ENST00000563400 SACSQ9NZJ4 4579 aa2.6□□□□□ -1.99
VPS35P1-201ENST00000563400 PCLOQ9Y6V0 5065 aa2.59□□□□□ -1.99
VPS35P1-201ENST00000563400 NDUFB1O75438 58 aa2.59□□□□□ -1.99
VPS35P1-201ENST00000563400 HYDINQ4G0P3 5121 aa2.59□□□□□ -2
VPS35P1-201ENST00000563400 LINC00643Q86TS7 51 aa2.58□□□□□ -2
VPS35P1-201ENST00000563400 KRTAP4-4Q9BYR3 166 aa2.58□□□□□ -2
VPS35P1-201ENST00000563400 TRBV7-4A0A0J9YYF1 115 aa2.58□□□□□ -2
VPS35P1-201ENST00000563400 KRTAP10-4P60372 401 aaPredicted RBP2.57□□□□□ -2
VPS35P1-201ENST00000563400 HERC2O95714 4834 aa2.56□□□□□ -2
VPS35P1-201ENST00000563400 INE1O15225 51 aa2.56□□□□□ -2
VPS35P1-201ENST00000563400 DNAH17Q9UFH2 4485 aa2.56□□□□□ -2
VPS35P1-201ENST00000563400 ACYP1P07311 99 aa2.55□□□□□ -2
VPS35P1-201ENST00000563400 LINC00208Q96KT6 92 aa2.55□□□□□ -2
VPS35P1-201ENST00000563400 NREPQ16612 68 aa2.54□□□□□ -2
VPS35P1-201ENST00000563400 UBL5Q9BZL1 73 aa2.54□□□□□ -2
VPS35P1-201ENST00000563400 RYR1P21817 5038 aa2.54□□□□□ -2
VPS35P1-201ENST00000563400 DNAH10Q8IVF4 4471 aa2.53□□□□□ -2
VPS35P1-201ENST00000563400 LOC110117498A0A087WWA1 95 aa2.53□□□□□ -2
VPS35P1-201ENST00000563400 PRR15LQ9BU68 103 aa2.53□□□□□ -2
VPS35P1-201ENST00000563400 DNAH2Q9P225 4427 aa2.53□□□□□ -2
VPS35P1-201ENST00000563400 DNAH11Q96DT5 4516 aa2.52□□□□□ -2.01
VPS35P1-201ENST00000563400 DNAH5Q8TE73 4624 aa2.52□□□□□ -2.01
VPS35P1-201ENST00000563400 FRAS1Q86XX4 4008 aa2.52□□□□□ -2.01
VPS35P1-201ENST00000563400 PKD1P98161 4303 aa2.52□□□□□ -2.01
VPS35P1-201ENST00000563400 HECTD4Q9Y4D8 3996 aa2.52□□□□□ -2.01
VPS35P1-201ENST00000563400 FAT2Q9NYQ8 4349 aa2.51□□□□□ -2.01
VPS35P1-201ENST00000563400 DMBT1Q9UGM3 2413 aaPredicted RBP2.51□□□□□ -2.01
VPS35P1-201ENST00000563400 LINC01558Q9Y6Z2 57 aa2.5□□□□□ -2.01
VPS35P1-201ENST00000563400 LRP1BQ9NZR2 4599 aa2.5□□□□□ -2.01
VPS35P1-201ENST00000563400 IGKV4-1P06312 121 aa2.49□□□□□ -2.01
VPS35P1-201ENST00000563400 MT1HL1P0DM35 61 aa2.49□□□□□ -2.01
VPS35P1-201ENST00000563400 SRRM2Q9UQ35 2752 aaKnown RBP2.49□□□□□ -2.01
VPS35P1-201ENST00000563400 FLG2Q5D862 2391 aaPredicted RBP2.49□□□□□ -2.01
VPS35P1-201ENST00000563400 KIAA1109Q2LD37 5005 aa2.49□□□□□ -2.01
VPS35P1-201ENST00000563400 A0A087WVE0 104 aa2.48□□□□□ -2.01
VPS35P1-201ENST00000563400 OBSCN-AS1Q96MR7 158 aa2.48□□□□□ -2.01
VPS35P1-201ENST00000563400 Q96NJ1 140 aa2.48□□□□□ -2.01
VPS35P1-201ENST00000563400 PKHD1P08F94 4074 aa2.48□□□□□ -2.01
VPS35P1-201ENST00000563400 ATP5EP2Q5VTU8 51 aa2.47□□□□□ -2.01
VPS35P1-201ENST00000563400 SNURFQ9Y675 71 aa2.47□□□□□ -2.01
VPS35P1-201ENST00000563400 DYNC1H1Q14204 4646 aaKnown RBP2.46□□□□□ -2.02
VPS35P1-201ENST00000563400 ABCA13Q86UQ4 5058 aa2.45□□□□□ -2.02
VPS35P1-201ENST00000563400 SPRR5A0A1B0GTR4 108 aa2.44□□□□□ -2.02
VPS35P1-201ENST00000563400 UQCR11O14957 56 aa2.44□□□□□ -2.02
VPS35P1-201ENST00000563400 TP53AIP1Q9HCN2 124 aa2.44□□□□□ -2.02
VPS35P1-201ENST00000563400 VPS13BQ7Z7G8 4022 aa2.43□□□□□ -2.02
VPS35P1-201ENST00000563400 LINC00472Q9H8W2 130 aa2.43□□□□□ -2.02
VPS35P1-201ENST00000563400 APOBP04114 4563 aaKnown RBP2.43□□□□□ -2.02
VPS35P1-201ENST00000563400 DNAH8Q96JB1 4490 aa2.42□□□□□ -2.02
VPS35P1-201ENST00000563400 LCE3EQ5T5B0 92 aa2.42□□□□□ -2.02
VPS35P1-201ENST00000563400 HSPG2P98160 4391 aa2.42□□□□□ -2.02
VPS35P1-201ENST00000563400 KRTAP13-4Q3LI77 160 aa2.42□□□□□ -2.02
VPS35P1-201ENST00000563400 KRTAP13-3Q3SY46 172 aa2.42□□□□□ -2.02
VPS35P1-201ENST00000563400 C9orf92A6NGG3 77 aa2.41□□□□□ -2.02
VPS35P1-201ENST00000563400 ACYP2P14621 99 aa2.41□□□□□ -2.02
VPS35P1-201ENST00000563400 MRPL34Q9BQ48 92 aaKnown RBP2.41□□□□□ -2.02
VPS35P1-201ENST00000563400 RPL37P61927 97 aaKnown RBP2.4□□□□□ -2.03
VPS35P1-201ENST00000563400 WFDC13Q8IUB5 93 aa2.4□□□□□ -2.03
VPS35P1-201ENST00000563400 KRTAP12-2P59991 146 aa2.39□□□□□ -2.03
VPS35P1-201ENST00000563400 LINC00846Q9NV44 126 aa2.39□□□□□ -2.03
VPS35P1-201ENST00000563400 FAT1Q14517 4588 aa2.39□□□□□ -2.03
VPS35P1-201ENST00000563400 PP632Q6XCG6 107 aa2.37□□□□□ -2.03
VPS35P1-201ENST00000563400 COX6B2Q6YFQ2 88 aa2.37□□□□□ -2.03
VPS35P1-201ENST00000563400 HERC1Q15751 4861 aa2.37□□□□□ -2.03
VPS35P1-201ENST00000563400 SPINK7P58062 85 aa2.37□□□□□ -2.03
VPS35P1-201ENST00000563400 ZCCHC13Q8WW36 166 aaKnown RBP2.36□□□□□ -2.03
VPS35P1-201ENST00000563400 K7EQZ3 153 aa2.35□□□□□ -2.03
VPS35P1-201ENST00000563400 PCOTHQ58A44 107 aa2.35□□□□□ -2.03
VPS35P1-201ENST00000563400 UBR4Q5T4S7 5183 aa2.34□□□□□ -2.04
VPS35P1-201ENST00000563400 H0Y9P7 68 aa2.32□□□□□ -2.04
VPS35P1-201ENST00000563400 MMP24-AS1A0A0U1RRL7 71 aa2.32□□□□□ -2.04
VPS35P1-201ENST00000563400 MYCBP2O75592 4640 aa2.31□□□□□ -2.04
VPS35P1-201ENST00000563400 M0R2T5 61 aa2.3□□□□□ -2.04
VPS35P1-201ENST00000563400 SPATA8Q6RVD6 105 aa2.3□□□□□ -2.04
VPS35P1-201ENST00000563400 LRP1Q07954 4544 aaKnown RBP2.29□□□□□ -2.04
VPS35P1-201ENST00000563400 LCE3AQ5TA76 89 aa2.29□□□□□ -2.04
VPS35P1-201ENST00000563400 OBSCNQ5VST9 7968 aa2.28□□□□□ -2.04
VPS35P1-201ENST00000563400 FAT3Q8TDW7 4589 aa2.28□□□□□ -2.04
VPS35P1-201ENST00000563400 KRTAP5-2Q701N4 177 aa2.28□□□□□ -2.04
VPS35P1-201ENST00000563400 KRTAP12-1P59990 96 aa2.27□□□□□ -2.05
VPS35P1-201ENST00000563400 PKHD1L1Q86WI1 4243 aa2.27□□□□□ -2.05
VPS35P1-201ENST00000563400 TNXBP22105 4242 aa2.26□□□□□ -2.05
VPS35P1-201ENST00000563400 H1FX-AS1Q4G0G2 97 aa2.26□□□□□ -2.05
VPS35P1-201ENST00000563400 PLAC4Q8WY50 150 aa2.26□□□□□ -2.05
VPS35P1-201ENST00000563400 KRTAP10-10P60014 251 aa2.23□□□□□ -2.05
VPS35P1-201ENST00000563400 HMCN2Q8NDA2 5059 aa2.23□□□□□ -2.05
VPS35P1-201ENST00000563400 KRTAP4-3Q9BYR4 195 aa2.22□□□□□ -2.05
VPS35P1-201ENST00000563400 A0A1B0GU69 56 aa2.21□□□□□ -2.06
VPS35P1-201ENST00000563400 KRTAP6-3Q3LI67 103 aa2.2□□□□□ -2.06
VPS35P1-201ENST00000563400 S4R3F8 94 aa2.2□□□□□ -2.06
VPS35P1-201ENST00000563400 LCE3DQ9BYE3 92 aa2.19□□□□□ -2.06
VPS35P1-201ENST00000563400 HMCN1Q96RW7 5635 aa2.17□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms