RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 CSMD3Q7Z407 3707 aa2.89□□□□□ -1.95
VPS50-220ENST00000544910 KMT2AQ03164 3969 aa2.88□□□□□ -1.95
VPS50-220ENST00000544910 DNAH5Q8TE73 4624 aa2.88□□□□□ -1.95
VPS50-220ENST00000544910 TENM2Q9NT68 2774 aa2.87□□□□□ -1.95
VPS50-220ENST00000544910 TGP01266 2768 aa2.86□□□□□ -1.95
VPS50-220ENST00000544910 KRTAP12-2P59991 146 aa2.84□□□□□ -1.95
VPS50-220ENST00000544910 MEGF8Q7Z7M0 2845 aa2.84□□□□□ -1.95
VPS50-220ENST00000544910 KRTAP10-6P60371 365 aaPredicted RBP2.83□□□□□ -1.96
VPS50-220ENST00000544910 SACSQ9NZJ4 4579 aa2.83□□□□□ -1.96
VPS50-220ENST00000544910 SRRM2Q9UQ35 2752 aaKnown RBP2.82□□□□□ -1.96
VPS50-220ENST00000544910 KRTAP13-4Q3LI77 160 aa2.82□□□□□ -1.96
VPS50-220ENST00000544910 FAT2Q9NYQ8 4349 aa2.82□□□□□ -1.96
VPS50-220ENST00000544910 MT1HL1P0DM35 61 aa2.81□□□□□ -1.96
VPS50-220ENST00000544910 KRTAP3-3Q9BYR6 98 aa2.81□□□□□ -1.96
VPS50-220ENST00000544910 DYNC1H1Q14204 4646 aaKnown RBP2.8□□□□□ -1.96
VPS50-220ENST00000544910 KRTAP12-1P59990 96 aa2.8□□□□□ -1.96
VPS50-220ENST00000544910 VPS13BQ7Z7G8 4022 aa2.79□□□□□ -1.96
VPS50-220ENST00000544910 LRP1BQ9NZR2 4599 aa2.79□□□□□ -1.96
VPS50-220ENST00000544910 KRTAP3-2Q9BYR7 98 aa2.78□□□□□ -1.96
VPS50-220ENST00000544910 KRTAP15-1Q3LI76 137 aa2.77□□□□□ -1.97
VPS50-220ENST00000544910 FBN3Q75N90 2809 aa2.76□□□□□ -1.97
VPS50-220ENST00000544910 COL7A1Q02388 2944 aa2.76□□□□□ -1.97
VPS50-220ENST00000544910 PKD1P98161 4303 aa2.75□□□□□ -1.97
VPS50-220ENST00000544910 INE1O15225 51 aa2.75□□□□□ -1.97
VPS50-220ENST00000544910 PKHD1L1Q86WI1 4243 aa2.74□□□□□ -1.97
VPS50-220ENST00000544910 APOBP04114 4563 aaKnown RBP2.72□□□□□ -1.97
VPS50-220ENST00000544910 PRO2289Q9P1D8 64 aa2.7□□□□□ -1.98
VPS50-220ENST00000544910 HYDINQ4G0P3 5121 aa2.7□□□□□ -1.98
VPS50-220ENST00000544910 KRTAP4-5Q9BYR2 181 aa2.69□□□□□ -1.98
VPS50-220ENST00000544910 FAT1Q14517 4588 aa2.68□□□□□ -1.98
VPS50-220ENST00000544910 DNHD1Q96M86 4753 aa2.66□□□□□ -1.98
VPS50-220ENST00000544910 KRTAP10-10P60014 251 aa2.66□□□□□ -1.98
VPS50-220ENST00000544910 PKHD1P08F94 4074 aa2.65□□□□□ -1.99
VPS50-220ENST00000544910 FAT3Q8TDW7 4589 aa2.65□□□□□ -1.99
VPS50-220ENST00000544910 TNXBP22105 4242 aa2.61□□□□□ -1.99
VPS50-220ENST00000544910 RYR2Q92736 4967 aa2.61□□□□□ -1.99
VPS50-220ENST00000544910 HSPG2P98160 4391 aa2.59□□□□□ -2
VPS50-220ENST00000544910 LORP23490 312 aaPredicted RBP2.59□□□□□ -2
VPS50-220ENST00000544910 KRTAP23-1A1A580 65 aa2.58□□□□□ -2
VPS50-220ENST00000544910 KRTAP4-1Q9BYQ7 146 aa2.56□□□□□ -2
VPS50-220ENST00000544910 RYR1P21817 5038 aa2.52□□□□□ -2.01
VPS50-220ENST00000544910 LRP1Q07954 4544 aaKnown RBP2.52□□□□□ -2.01
VPS50-220ENST00000544910 LCE2DQ5TA82 110 aaPredicted RBP2.51□□□□□ -2.01
VPS50-220ENST00000544910 MUC17Q685J3 4493 aa2.49□□□□□ -2.01
VPS50-220ENST00000544910 MYCBP2O75592 4640 aa2.49□□□□□ -2.01
VPS50-220ENST00000544910 RYR3Q15413 4870 aa2.48□□□□□ -2.01
VPS50-220ENST00000544910 LCE3AQ5TA76 89 aa2.43□□□□□ -2.02
VPS50-220ENST00000544910 KRTAP10-12P60413 245 aa2.43□□□□□ -2.02
VPS50-220ENST00000544910 MT1HP80294 61 aa2.43□□□□□ -2.02
VPS50-220ENST00000544910 LPAP08519 4548 aa2.41□□□□□ -2.02
VPS50-220ENST00000544910 SPRR2GQ9BYE4 73 aa2.41□□□□□ -2.02
VPS50-220ENST00000544910 KRTAP12-3P60328 96 aa2.4□□□□□ -2.03
VPS50-220ENST00000544910 KMT2CQ8NEZ4 4911 aaKnown RBP2.38□□□□□ -2.03
VPS50-220ENST00000544910 MT2AP02795 61 aa2.37□□□□□ -2.03
VPS50-220ENST00000544910 KIAA1109Q2LD37 5005 aa2.35□□□□□ -2.03
VPS50-220ENST00000544910 MT1FP04733 61 aa2.35□□□□□ -2.03
VPS50-220ENST00000544910 HERC1Q15751 4861 aa2.34□□□□□ -2.03
VPS50-220ENST00000544910 LRP2P98164 4655 aa2.32□□□□□ -2.04
VPS50-220ENST00000544910 KRTAP19-2Q3LHN2 52 aa2.32□□□□□ -2.04
VPS50-220ENST00000544910 BIRC6Q9NR09 4857 aa2.29□□□□□ -2.04
VPS50-220ENST00000544910 KRTAP19-1Q8IUB9 90 aa2.29□□□□□ -2.04
VPS50-220ENST00000544910 LCE2CQ5TA81 110 aa2.28□□□□□ -2.04
VPS50-220ENST00000544910 EPPK1P58107 5090 aaKnown RBP2.28□□□□□ -2.04
VPS50-220ENST00000544910 FLGP20930 4061 aaPredicted RBP2.27□□□□□ -2.05
VPS50-220ENST00000544910 KRTAP19-8Q3LI54 63 aa2.27□□□□□ -2.05
VPS50-220ENST00000544910 HERC2O95714 4834 aa2.25□□□□□ -2.05
VPS50-220ENST00000544910 KRTAP9-8Q9BYQ0 159 aa2.24□□□□□ -2.05
VPS50-220ENST00000544910 KRTAP8-1Q8IUC2 63 aa2.22□□□□□ -2.05
VPS50-220ENST00000544910 MT1XP80297 61 aa2.22□□□□□ -2.05
VPS50-220ENST00000544910 KRTAP10-5P60370 271 aa2.21□□□□□ -2.06
VPS50-220ENST00000544910 CRCT1Q9UGL9 99 aa2.21□□□□□ -2.06
VPS50-220ENST00000544910 MT1BP07438 61 aa2.21□□□□□ -2.06
VPS50-220ENST00000544910 ABCA13Q86UQ4 5058 aa2.21□□□□□ -2.06
VPS50-220ENST00000544910 KRTAP10-7P60409 375 aaPredicted RBP2.2□□□□□ -2.06
VPS50-220ENST00000544910 KRTAP19-5Q3LI72 72 aa2.2□□□□□ -2.06
VPS50-220ENST00000544910 SPRR5A0A1B0GTR4 108 aa2.2□□□□□ -2.06
VPS50-220ENST00000544910 KRTAP19-4Q3LI73 84 aa2.19□□□□□ -2.06
VPS50-220ENST00000544910 LCE3CQ5T5A8 94 aa2.17□□□□□ -2.06
VPS50-220ENST00000544910 KRTAP9-3Q9BYQ3 159 aa2.17□□□□□ -2.06
VPS50-220ENST00000544910 PCLOQ9Y6V0 5065 aa2.12□□□□□ -2.07
VPS50-220ENST00000544910 HMCN2Q8NDA2 5059 aa2.07□□□□□ -2.08
VPS50-220ENST00000544910 LCE2BO14633 110 aa2.05□□□□□ -2.08
VPS50-220ENST00000544910 KRTAP4-8A0A0G2JLE6 195 aa2.04□□□□□ -2.08
VPS50-220ENST00000544910 KRTAP4-8Q9BYQ9 185 aa2.04□□□□□ -2.08
VPS50-220ENST00000544910 RNF213Q63HN8 5207 aa2.02□□□□□ -2.09
VPS50-220ENST00000544910 FAT4Q6V0I7 4981 aa2.01□□□□□ -2.09
VPS50-220ENST00000544910 LCE2AQ5TA79 106 aaPredicted RBP1.99□□□□□ -2.09
VPS50-220ENST00000544910 SPRR2FQ96RM1 72 aa1.98□□□□□ -2.09
VPS50-220ENST00000544910 KRTAP12-4P60329 112 aa1.98□□□□□ -2.09
VPS50-220ENST00000544910 LOC100996750A0A140TA64 210 aa1.97□□□□□ -2.09
VPS50-220ENST00000544910 KRTAP4-6Q9BYQ5 205 aa1.97□□□□□ -2.09
VPS50-220ENST00000544910 MT1LQ93083 61 aa1.96□□□□□ -2.1
VPS50-220ENST00000544910 MT1EP04732 61 aa1.96□□□□□ -2.1
VPS50-220ENST00000544910 MUC2Q02817 5179 aa1.95□□□□□ -2.1
VPS50-220ENST00000544910 MT1GP13640 62 aa1.94□□□□□ -2.1
VPS50-220ENST00000544910 KRTAP4-7Q9BYR0 210 aa1.94□□□□□ -2.1
VPS50-220ENST00000544910 KRTAP19-6Q3LI70 58 aa1.92□□□□□ -2.1
VPS50-220ENST00000544910 KRTAP19-7Q3SYF9 63 aa1.9□□□□□ -2.11
VPS50-220ENST00000544910 KRTAP19-3Q7Z4W3 81 aa1.9□□□□□ -2.11
VPS50-220ENST00000544910 UBR4Q5T4S7 5183 aa1.88□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms