RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 NISCHQ9Y2I1 1504 aa11.1□□□□□ -0.63
VPS50-220ENST00000544910 DCAF8L2P0C7V8 631 aa9.97□□□□□ -0.81
VPS50-220ENST00000544910 SHROOM4Q9ULL8 1493 aa9.87□□□□□ -0.83
VPS50-220ENST00000544910 SUPT5HO00267 1087 aaKnown RBP9.79□□□□□ -0.84
VPS50-220ENST00000544910 CCDC180Q9P1Z9 1646 aa9.42□□□□□ -0.9
VPS50-220ENST00000544910 ZCCHC6Q5VYS8 1495 aaKnown RBP9.33□□□□□ -0.92
VPS50-220ENST00000544910 PCGF6Q9BYE7 350 aa9.17□□□□□ -0.94
VPS50-220ENST00000544910 CHIC1Q5VXU3 224 aa9.17□□□□□ -0.94
VPS50-220ENST00000544910 EHMT2Q96KQ7 1210 aa9.16□□□□□ -0.94
VPS50-220ENST00000544910 TRIM41Q8WV44 630 aa9.14□□□□□ -0.95
VPS50-220ENST00000544910 FAM9AQ8IZU1 332 aaPredicted RBP9.12□□□□□ -0.95
VPS50-220ENST00000544910 PELP1Q8IZL8 1130 aaKnown RBP9.06□□□□□ -0.96
VPS50-220ENST00000544910 MYT1Q01538 1121 aa9.05□□□□□ -0.96
VPS50-220ENST00000544910 SCRIBQ14160 1630 aa9.03□□□□□ -0.96
VPS50-220ENST00000544910 ABCC9O60706 1549 aa9.02□□□□□ -0.97
VPS50-220ENST00000544910 DCAF1Q9Y4B6 1507 aa9□□□□□ -0.97
VPS50-220ENST00000544910 ZEB1P37275 1124 aaPredicted RBP9□□□□□ -0.97
VPS50-220ENST00000544910 HRCP23327 699 aa8.99□□□□□ -0.97
VPS50-220ENST00000544910 LOC105371045A0A1W2PR82 267 aa8.98□□□□□ -0.97
VPS50-220ENST00000544910 TRIM26Q12899 539 aaPredicted RBP8.97□□□□□ -0.97
VPS50-220ENST00000544910 APLP2Q06481 763 aa8.91□□□□□ -0.98
VPS50-220ENST00000544910 MYO15BQ96JP2 1530 aa8.88□□□□□ -0.99
VPS50-220ENST00000544910 TTBK1Q5TCY1 1321 aaPredicted RBP8.88□□□□□ -0.99
VPS50-220ENST00000544910 UBTFP17480 764 aaKnown RBP8.84□□□□□ -0.99
VPS50-220ENST00000544910 NACADO15069 1562 aa8.83□□□□□ -1
VPS50-220ENST00000544910 CCER1Q8TC90 406 aaPredicted RBP8.83□□□□□ -1
VPS50-220ENST00000544910 RB1CC1Q8TDY2 1594 aa8.8□□□□□ -1
VPS50-220ENST00000544910 RSF1Q96T23 1441 aaPredicted RBP8.79□□□□□ -1
VPS50-220ENST00000544910 PPARGC1BQ86YN6 1023 aaKnown RBP8.79□□□□□ -1
VPS50-220ENST00000544910 RANGAP1P46060 587 aaPredicted RBP8.76□□□□□ -1.01
VPS50-220ENST00000544910 PABPN1Q86U42 306 aaKnown RBP eCLIP8.73□□□□□ -1.01
VPS50-220ENST00000544910 CENPBP07199 599 aaPredicted RBP8.69□□□□□ -1.02
VPS50-220ENST00000544910 BAZ1AQ9NRL2 1556 aaPredicted RBP8.64□□□□□ -1.03
VPS50-220ENST00000544910 CECR2Q9BXF3 1484 aa8.62□□□□□ -1.03
VPS50-220ENST00000544910 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.61□□□□□ -1.03
VPS50-220ENST00000544910 MROH2BQ7Z745 1585 aa8.59□□□□□ -1.03
VPS50-220ENST00000544910 ATP1B4Q9UN42 357 aaPredicted RBP8.57□□□□□ -1.04
VPS50-220ENST00000544910 CSRNP3Q8WYN3 585 aa8.57□□□□□ -1.04
VPS50-220ENST00000544910 ERICH6Q7L0X2 663 aa8.57□□□□□ -1.04
VPS50-220ENST00000544910 WIZO95785 1651 aa8.56□□□□□ -1.04
VPS50-220ENST00000544910 HNRNPUL2Q1KMD3 747 aaKnown RBP8.56□□□□□ -1.04
VPS50-220ENST00000544910 TOP2AP11388 1531 aaKnown RBP8.52□□□□□ -1.05
VPS50-220ENST00000544910 EEA1Q15075 1411 aa8.51□□□□□ -1.05
VPS50-220ENST00000544910 YTHDC1Q96MU7 727 aaKnown RBP8.51□□□□□ -1.05
VPS50-220ENST00000544910 DIEXFQ68CQ4 756 aaKnown RBP8.5□□□□□ -1.05
VPS50-220ENST00000544910 GOLGA3Q08378 1498 aa8.49□□□□□ -1.05
VPS50-220ENST00000544910 BAZ1BQ9UIG0 1483 aaKnown RBP8.48□□□□□ -1.05
VPS50-220ENST00000544910 CCDC88BA6NC98 1476 aa8.47□□□□□ -1.05
VPS50-220ENST00000544910 SMARCA4P51532 1647 aa8.47□□□□□ -1.05
VPS50-220ENST00000544910 CEP162Q5TB80 1403 aa8.47□□□□□ -1.05
VPS50-220ENST00000544910 WRNQ14191 1432 aaPredicted RBP eCLIP8.46□□□□□ -1.06
VPS50-220ENST00000544910 ITGAEP38570 1179 aa8.45□□□□□ -1.06
VPS50-220ENST00000544910 ABCC8Q09428 1581 aa8.45□□□□□ -1.06
VPS50-220ENST00000544910 TNIKQ9UKE5 1360 aa8.44□□□□□ -1.06
VPS50-220ENST00000544910 CEP164Q9UPV0 1460 aa8.42□□□□□ -1.06
VPS50-220ENST00000544910 CLIP1P30622 1438 aa8.4□□□□□ -1.06
VPS50-220ENST00000544910 ZNF316A6NFI3 1004 aaPredicted RBP8.4□□□□□ -1.06
VPS50-220ENST00000544910 SMARCA2P51531 1590 aa8.39□□□□□ -1.07
VPS50-220ENST00000544910 SOGA1O94964 1423 aa8.39□□□□□ -1.07
VPS50-220ENST00000544910 FAM50AQ14320 339 aaKnown RBP8.36□□□□□ -1.07
VPS50-220ENST00000544910 NEFLP07196 543 aa8.34□□□□□ -1.07
VPS50-220ENST00000544910 ACIN1Q9UKV3 1341 aaKnown RBP8.32□□□□□ -1.08
VPS50-220ENST00000544910 KIF27Q86VH2 1401 aa8.3□□□□□ -1.08
VPS50-220ENST00000544910 GTF3C3Q9Y5Q9 886 aa8.29□□□□□ -1.08
VPS50-220ENST00000544910 ATAD2BQ9ULI0 1458 aa8.28□□□□□ -1.08
VPS50-220ENST00000544910 P3H3Q8IVL6 736 aa8.27□□□□□ -1.09
VPS50-220ENST00000544910 NEUROD1Q13562 356 aa8.26□□□□□ -1.09
VPS50-220ENST00000544910 VPS8Q8N3P4 1428 aa8.25□□□□□ -1.09
VPS50-220ENST00000544910 RUSC2Q8N2Y8 1516 aa8.23□□□□□ -1.09
VPS50-220ENST00000544910 UNC13AQ9UPW8 1703 aa8.22□□□□□ -1.09
VPS50-220ENST00000544910 TRIM52Q96A61 297 aa8.2□□□□□ -1.1
VPS50-220ENST00000544910 SCAF1Q9H7N4 1312 aaKnown RBP8.2□□□□□ -1.1
VPS50-220ENST00000544910 KIF21BO75037 1637 aa8.2□□□□□ -1.1
VPS50-220ENST00000544910 RAPGEF2Q9Y4G8 1499 aa8.19□□□□□ -1.1
VPS50-220ENST00000544910 CUX2O14529 1486 aa8.19□□□□□ -1.1
VPS50-220ENST00000544910 SYNJ1O43426 1573 aa8.17□□□□□ -1.1
VPS50-220ENST00000544910 ANP32CO43423 234 aa8.16□□□□□ -1.1
VPS50-220ENST00000544910 BICRAQ9NZM4 1560 aa8.15□□□□□ -1.1
VPS50-220ENST00000544910 EIF4G1Q04637 1599 aaKnown RBP8.15□□□□□ -1.1
VPS50-220ENST00000544910 CLSPNQ9HAW4 1339 aa8.15□□□□□ -1.11
VPS50-220ENST00000544910 CARMIL1Q5VZK9 1371 aa8.14□□□□□ -1.11
VPS50-220ENST00000544910 MIER1Q8N108 512 aa8.14□□□□□ -1.11
VPS50-220ENST00000544910 FHAD1B1AJZ9 1412 aa8.14□□□□□ -1.11
VPS50-220ENST00000544910 CCNB3Q8WWL7 1395 aa8.13□□□□□ -1.11
VPS50-220ENST00000544910 MTUS2Q5JR59 1369 aa8.13□□□□□ -1.11
VPS50-220ENST00000544910 TONSLQ96HA7 1378 aa8.13□□□□□ -1.11
VPS50-220ENST00000544910 POLR3GLQ9BT43 218 aa8.12□□□□□ -1.11
VPS50-220ENST00000544910 TOP2BQ02880 1626 aa8.12□□□□□ -1.11
VPS50-220ENST00000544910 PEG3Q9GZU2 1588 aa8.12□□□□□ -1.11
VPS50-220ENST00000544910 ARID3CA6NKF2 412 aa8.1□□□□□ -1.11
VPS50-220ENST00000544910 ERICH3Q5RHP9 1530 aa8.1□□□□□ -1.11
VPS50-220ENST00000544910 NCAPD3P42695 1498 aa8.1□□□□□ -1.11
VPS50-220ENST00000544910 HMGXB3Q12766 1538 aa8.1□□□□□ -1.11
VPS50-220ENST00000544910 CADPSQ9ULU8 1353 aa8.09□□□□□ -1.11
VPS50-220ENST00000544910 KANK4Q5T7N3 995 aaPredicted RBP8.09□□□□□ -1.11
VPS50-220ENST00000544910 DAXXQ9UER7 740 aaPredicted RBP8.08□□□□□ -1.12
VPS50-220ENST00000544910 CDK11AQ9UQ88 783 aaPredicted RBP8.08□□□□□ -1.12
VPS50-220ENST00000544910 FBLN2P98095 1184 aa8.08□□□□□ -1.12
VPS50-220ENST00000544910 ARHGAP35Q9NRY4 1499 aa8.08□□□□□ -1.12
VPS50-220ENST00000544910 RTL5Q5HYW3 569 aaPredicted RBP8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms