RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 KRTAP8-1Q8IUC2 63 aa0.53□□□□□ -2.32
NUP54-208ENST00000508604 KRTAP2-4Q9BYR9 128 aa0.53□□□□□ -2.32
NUP54-208ENST00000508604 KRTAP2-1Q9BYU5 128 aa0.53□□□□□ -2.32
NUP54-208ENST00000508604 COL7A1Q02388 2944 aa0.53□□□□□ -2.32
NUP54-208ENST00000508604 LOC400499M0QZD8 3231 aa0.53□□□□□ -2.32
NUP54-208ENST00000508604 DOPEY1Q5JWR5 2465 aa0.53□□□□□ -2.32
NUP54-208ENST00000508604 RIF1Q5UIP0 2472 aaKnown RBP0.53□□□□□ -2.32
NUP54-208ENST00000508604 ABCA12Q86UK0 2595 aa0.53□□□□□ -2.32
NUP54-208ENST00000508604 CSMD1Q96PZ7 3565 aa0.53□□□□□ -2.33
NUP54-208ENST00000508604 DMXL2Q8TDJ6 3036 aa0.53□□□□□ -2.33
NUP54-208ENST00000508604 DCHS2Q6V1P9 2916 aa0.52□□□□□ -2.33
NUP54-208ENST00000508604 DNAH14Q0VDD8 3507 aa0.52□□□□□ -2.33
NUP54-208ENST00000508604 VCANP13611 3396 aa0.52□□□□□ -2.33
NUP54-208ENST00000508604 XIRP2A4UGR9 3374 aa0.52□□□□□ -2.33
NUP54-208ENST00000508604 NF1P21359 2839 aa0.52□□□□□ -2.33
NUP54-208ENST00000508604 LAMA5O15230 3695 aa0.51□□□□□ -2.33
NUP54-208ENST00000508604 CENPEQ02224 2701 aa0.51□□□□□ -2.33
NUP54-208ENST00000508604 SPENQ96T58 3664 aaKnown RBP0.51□□□□□ -2.33
NUP54-208ENST00000508604 ACANP16112 2415 aa0.51□□□□□ -2.33
NUP54-208ENST00000508604 LRRK2Q5S007 2527 aa0.51□□□□□ -2.33
NUP54-208ENST00000508604 FAT4Q6V0I7 4981 aa0.51□□□□□ -2.33
NUP54-208ENST00000508604 LAMA3Q16787 3333 aa0.51□□□□□ -2.33
NUP54-208ENST00000508604 KRTAP10-4P60372 401 aaPredicted RBP0.51□□□□□ -2.33
NUP54-208ENST00000508604 SPTAN1Q13813 2472 aaKnown RBP0.51□□□□□ -2.33
NUP54-208ENST00000508604 APCP25054 2843 aa0.51□□□□□ -2.33
NUP54-208ENST00000508604 WDFY3Q8IZQ1 3526 aa0.51□□□□□ -2.33
NUP54-208ENST00000508604 UTP20O75691 2785 aaKnown RBP0.5□□□□□ -2.33
NUP54-208ENST00000508604 PIEZO1Q92508 2521 aa0.5□□□□□ -2.33
NUP54-208ENST00000508604 EPPK1P58107 5090 aaKnown RBP0.5□□□□□ -2.33
NUP54-208ENST00000508604 ABCA13Q86UQ4 5058 aa0.5□□□□□ -2.33
NUP54-208ENST00000508604 KRTAP20-1Q3LI63 56 aa0.5□□□□□ -2.33
NUP54-208ENST00000508604 RNF213Q63HN8 5207 aa0.5□□□□□ -2.33
NUP54-208ENST00000508604 SETXQ7Z333 2677 aaKnown RBP0.5□□□□□ -2.33
NUP54-208ENST00000508604 TGP01266 2768 aa0.5□□□□□ -2.33
NUP54-208ENST00000508604 TENM4Q6N022 2769 aa0.5□□□□□ -2.33
NUP54-208ENST00000508604 ASPMQ8IZT6 3477 aa0.49□□□□□ -2.33
NUP54-208ENST00000508604 ITPR3Q14573 2671 aa0.49□□□□□ -2.33
NUP54-208ENST00000508604 NSD1Q96L73 2696 aaPredicted RBP0.49□□□□□ -2.33
NUP54-208ENST00000508604 TLN1Q9Y490 2541 aaKnown RBP0.49□□□□□ -2.33
NUP54-208ENST00000508604 NIPBLQ6KC79 2804 aaeCLIP0.49□□□□□ -2.33
NUP54-208ENST00000508604 CSMD3Q7Z407 3707 aa0.49□□□□□ -2.33
NUP54-208ENST00000508604 TACC2O95359 2948 aa0.49□□□□□ -2.33
NUP54-208ENST00000508604 FRAS1Q86XX4 4008 aa0.49□□□□□ -2.33
NUP54-208ENST00000508604 EPG5Q9HCE0 2579 aa0.49□□□□□ -2.33
NUP54-208ENST00000508604 ZNF292O60281 2723 aa0.48□□□□□ -2.33
NUP54-208ENST00000508604 MYO9AB2RTY4 2548 aa0.48□□□□□ -2.33
NUP54-208ENST00000508604 TEX15Q9BXT5 2789 aa0.48□□□□□ -2.33
NUP54-208ENST00000508604 PDZD2O15018 2839 aa0.48□□□□□ -2.33
NUP54-208ENST00000508604 HERC1Q15751 4861 aa0.48□□□□□ -2.33
NUP54-208ENST00000508604 MUC3AQ02505 3323 aa0.48□□□□□ -2.33
NUP54-208ENST00000508604 USP9XQ93008 2570 aaPredicted RBP0.48□□□□□ -2.33
NUP54-208ENST00000508604 TRRAPQ9Y4A5 3859 aa0.48□□□□□ -2.33
NUP54-208ENST00000508604 SMG1Q96Q15 3661 aaKnown RBP0.48□□□□□ -2.33
NUP54-208ENST00000508604 CSMD2Q7Z408 3487 aa0.48□□□□□ -2.33
NUP54-208ENST00000508604 CFAP46Q8IYW2 2715 aa0.48□□□□□ -2.33
NUP54-208ENST00000508604 TLN2Q9Y4G6 2542 aa0.48□□□□□ -2.33
NUP54-208ENST00000508604 CHD8Q9HCK8 2581 aa0.47□□□□□ -2.33
NUP54-208ENST00000508604 BRCA2P51587 3418 aa0.47□□□□□ -2.33
NUP54-208ENST00000508604 HECTD1Q9ULT8 2610 aa0.47□□□□□ -2.33
NUP54-208ENST00000508604 LYSTQ99698 3801 aa0.47□□□□□ -2.33
NUP54-208ENST00000508604 VPS13DQ5THJ4 4388 aa0.47□□□□□ -2.33
NUP54-208ENST00000508604 USP9YO00507 2555 aaPredicted RBP0.47□□□□□ -2.33
NUP54-208ENST00000508604 BSNQ9UPA5 3926 aa0.47□□□□□ -2.33
NUP54-208ENST00000508604 ADGRG4Q8IZF6 3080 aa0.47□□□□□ -2.33
NUP54-208ENST00000508604 EYSQ5T1H1 3165 aa0.46□□□□□ -2.34
NUP54-208ENST00000508604 SMR3BP02814 79 aaPredicted RBP0.46□□□□□ -2.34
NUP54-208ENST00000508604 ZANQ9Y493 2812 aa0.46□□□□□ -2.34
NUP54-208ENST00000508604 MTORP42345 2549 aa0.46□□□□□ -2.34
NUP54-208ENST00000508604 STAB2Q8WWQ8 2551 aa0.46□□□□□ -2.34
NUP54-208ENST00000508604 FBN2P35556 2912 aa0.46□□□□□ -2.34
NUP54-208ENST00000508604 CDH23Q9H251 3354 aa0.46□□□□□ -2.34
NUP54-208ENST00000508604 ANK2Q01484 3957 aa0.45□□□□□ -2.34
NUP54-208ENST00000508604 KMT2AQ03164 3969 aa0.45□□□□□ -2.34
NUP54-208ENST00000508604 MAST4O15021 2626 aa0.45□□□□□ -2.34
NUP54-208ENST00000508604 RYR3Q15413 4870 aa0.45□□□□□ -2.34
NUP54-208ENST00000508604 MYO15AQ9UKN7 3530 aa0.45□□□□□ -2.34
NUP54-208ENST00000508604 ZFYVE26Q68DK2 2539 aa0.45□□□□□ -2.34
NUP54-208ENST00000508604 FLNCQ14315 2725 aa0.45□□□□□ -2.34
NUP54-208ENST00000508604 CUBNO60494 3623 aa0.44□□□□□ -2.34
NUP54-208ENST00000508604 HYDINQ4G0P3 5121 aa0.44□□□□□ -2.34
NUP54-208ENST00000508604 KRTAP19-5Q3LI72 72 aa0.44□□□□□ -2.34
NUP54-208ENST00000508604 POLQO75417 2590 aa0.44□□□□□ -2.34
NUP54-208ENST00000508604 SVEP1Q4LDE5 3571 aa0.44□□□□□ -2.34
NUP54-208ENST00000508604 HRNRQ86YZ3 2850 aaPredicted RBP0.44□□□□□ -2.34
NUP54-208ENST00000508604 NBEAL2Q6ZNJ1 2754 aa0.44□□□□□ -2.34
NUP54-208ENST00000508604 MXRA5Q9NR99 2828 aa0.44□□□□□ -2.34
NUP54-208ENST00000508604 ITPR2Q14571 2701 aa0.43□□□□□ -2.34
NUP54-208ENST00000508604 PRM1P04553 51 aa0.43□□□□□ -2.34
NUP54-208ENST00000508604 MT1AP04731 61 aa0.43□□□□□ -2.34
NUP54-208ENST00000508604 SPRR2GQ9BYE4 73 aa0.43□□□□□ -2.34
NUP54-208ENST00000508604 PKD1L1Q8TDX9 2849 aa0.43□□□□□ -2.34
NUP54-208ENST00000508604 BDP1A6H8Y1 2624 aa0.43□□□□□ -2.34
NUP54-208ENST00000508604 ATRQ13535 2644 aa0.43□□□□□ -2.34
NUP54-208ENST00000508604 NBEAL1Q6ZS30 2694 aa0.43□□□□□ -2.34
NUP54-208ENST00000508604 FASNP49327 2511 aaKnown RBP0.43□□□□□ -2.34
NUP54-208ENST00000508604 ZNF469Q96JG9 3925 aaPredicted RBP0.43□□□□□ -2.34
NUP54-208ENST00000508604 ACACBO00763 2458 aa0.43□□□□□ -2.34
NUP54-208ENST00000508604 HECTD4Q9Y4D8 3996 aa0.43□□□□□ -2.34
NUP54-208ENST00000508604 DNAH11Q96DT5 4516 aa0.42□□□□□ -2.34
NUP54-208ENST00000508604 GCN1Q92616 2671 aaKnown RBP0.42□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms