RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 LINC01554Q52M75 96 aa7.24□□□□□ -1.25
CCDC88A-211ENST00000471947 COX6B2Q6YFQ2 88 aa7.21□□□□□ -1.25
CCDC88A-211ENST00000471947 ADM2Q7Z4H4 148 aa7.21□□□□□ -1.25
CCDC88A-211ENST00000471947 KRTAP3-1Q9BYR8 98 aa7.2□□□□□ -1.26
CCDC88A-211ENST00000471947 A0A1B0GU33 70 aa7.19□□□□□ -1.26
CCDC88A-211ENST00000471947 RPL37P61927 97 aaKnown RBP7.16□□□□□ -1.26
CCDC88A-211ENST00000471947 H3BS24 57 aa7.16□□□□□ -1.26
CCDC88A-211ENST00000471947 HSPG2P98160 4391 aa7.16□□□□□ -1.26
CCDC88A-211ENST00000471947 LRP2P98164 4655 aa7.14□□□□□ -1.27
CCDC88A-211ENST00000471947 KTN1-AS1Q86SY8 53 aa7.13□□□□□ -1.27
CCDC88A-211ENST00000471947 S4R3F8 94 aa7.13□□□□□ -1.27
CCDC88A-211ENST00000471947 MT1HL1P0DM35 61 aa7.12□□□□□ -1.27
CCDC88A-211ENST00000471947 SPINT4Q6UDR6 99 aa7.1□□□□□ -1.27
CCDC88A-211ENST00000471947 K7ERS5 55 aa7.08□□□□□ -1.28
CCDC88A-211ENST00000471947 LPAP08519 4548 aa7.07□□□□□ -1.28
CCDC88A-211ENST00000471947 PKHD1L1Q86WI1 4243 aa7.04□□□□□ -1.28
CCDC88A-211ENST00000471947 H1FX-AS1Q4G0G2 97 aa7.03□□□□□ -1.28
CCDC88A-211ENST00000471947 A6NN06 94 aa7.02□□□□□ -1.29
CCDC88A-211ENST00000471947 H0YAA0 97 aa7□□□□□ -1.29
CCDC88A-211ENST00000471947 ABCA13Q86UQ4 5058 aa6.99□□□□□ -1.29
CCDC88A-211ENST00000471947 P0C880 135 aa6.99□□□□□ -1.29
CCDC88A-211ENST00000471947 HERC2O95714 4834 aa6.98□□□□□ -1.29
CCDC88A-211ENST00000471947 CSAG1Q6PB30 78 aa6.97□□□□□ -1.29
CCDC88A-211ENST00000471947 MUC2Q02817 5179 aa6.91□□□□□ -1.3
CCDC88A-211ENST00000471947 SEC61BP60468 96 aaKnown RBP6.89□□□□□ -1.31
CCDC88A-211ENST00000471947 TPRXLQ17RH7 258 aa6.86□□□□□ -1.31
CCDC88A-211ENST00000471947 TNXBP22105 4242 aa6.85□□□□□ -1.31
CCDC88A-211ENST00000471947 M0QZ58 72 aa6.85□□□□□ -1.31
CCDC88A-211ENST00000471947 KRTAP13-4Q3LI77 160 aa6.83□□□□□ -1.32
CCDC88A-211ENST00000471947 R4GN34 69 aa6.83□□□□□ -1.32
CCDC88A-211ENST00000471947 M0R2T5 61 aa6.81□□□□□ -1.32
CCDC88A-211ENST00000471947 KRTAP3-3Q9BYR6 98 aa6.81□□□□□ -1.32
CCDC88A-211ENST00000471947 HERC1Q15751 4861 aa6.77□□□□□ -1.33
CCDC88A-211ENST00000471947 KRTAP10-6P60371 365 aaPredicted RBP6.75□□□□□ -1.33
CCDC88A-211ENST00000471947 C10orf95Q9H7T3 257 aa6.74□□□□□ -1.33
CCDC88A-211ENST00000471947 KRTAP4-1Q9BYQ7 146 aa6.71□□□□□ -1.34
CCDC88A-211ENST00000471947 RNF213Q63HN8 5207 aa6.7□□□□□ -1.34
CCDC88A-211ENST00000471947 KRTAP3-2Q9BYR7 98 aa6.66□□□□□ -1.34
CCDC88A-211ENST00000471947 KRTAP12-2P59991 146 aa6.64□□□□□ -1.35
CCDC88A-211ENST00000471947 CAMK2N1Q7Z7J9 78 aa6.64□□□□□ -1.35
CCDC88A-211ENST00000471947 ROMO1P60602 79 aa6.62□□□□□ -1.35
CCDC88A-211ENST00000471947 FAT4Q6V0I7 4981 aa6.61□□□□□ -1.35
CCDC88A-211ENST00000471947 LORP23490 312 aaPredicted RBP6.59□□□□□ -1.35
CCDC88A-211ENST00000471947 PCLOQ9Y6V0 5065 aa6.57□□□□□ -1.36
CCDC88A-211ENST00000471947 BIRC6Q9NR09 4857 aa6.55□□□□□ -1.36
CCDC88A-211ENST00000471947 KRTAP25-1Q3LHN0 102 aa6.52□□□□□ -1.37
CCDC88A-211ENST00000471947 UBR4Q5T4S7 5183 aa6.51□□□□□ -1.37
CCDC88A-211ENST00000471947 KRTAP12-1P59990 96 aa6.48□□□□□ -1.37
CCDC88A-211ENST00000471947 KRTAP10-10P60014 251 aa6.32□□□□□ -1.4
CCDC88A-211ENST00000471947 NDUFAF8A1L188 74 aa6.26□□□□□ -1.41
CCDC88A-211ENST00000471947 HMCN2Q8NDA2 5059 aa6.23□□□□□ -1.41
CCDC88A-211ENST00000471947 PLAC4Q8WY50 150 aa6.2□□□□□ -1.42
CCDC88A-211ENST00000471947 MUC17Q685J3 4493 aa6.19□□□□□ -1.42
CCDC88A-211ENST00000471947 FSIP2Q5CZC0 6907 aa6.15□□□□□ -1.43
CCDC88A-211ENST00000471947 A0A0A0MQY5 61 aa6.12□□□□□ -1.43
CCDC88A-211ENST00000471947 KRTAP19-2Q3LHN2 52 aa6.06□□□□□ -1.44
CCDC88A-211ENST00000471947 TNP1P09430 55 aa6.03□□□□□ -1.44
CCDC88A-211ENST00000471947 MT1HP80294 61 aa6.02□□□□□ -1.45
CCDC88A-211ENST00000471947 FLGP20930 4061 aaPredicted RBP6□□□□□ -1.45
CCDC88A-211ENST00000471947 LCE2CQ5TA81 110 aa5.98□□□□□ -1.45
CCDC88A-211ENST00000471947 USH2AO75445 5202 aa5.95□□□□□ -1.46
CCDC88A-211ENST00000471947 MT1FP04733 61 aa5.94□□□□□ -1.46
CCDC88A-211ENST00000471947 MT2AP02795 61 aa5.9□□□□□ -1.47
CCDC88A-211ENST00000471947 LUZP6Q538Z0 58 aa5.84□□□□□ -1.48
CCDC88A-211ENST00000471947 KRTAP19-1Q8IUB9 90 aa5.82□□□□□ -1.48
CCDC88A-211ENST00000471947 KRTAP9-8Q9BYQ0 159 aa5.73□□□□□ -1.49
CCDC88A-211ENST00000471947 KRTAP15-1Q3LI76 137 aa5.71□□□□□ -1.5
CCDC88A-211ENST00000471947 LCE3AQ5TA76 89 aa5.7□□□□□ -1.5
CCDC88A-211ENST00000471947 PP632Q6XCG6 107 aa5.69□□□□□ -1.5
CCDC88A-211ENST00000471947 SPRR2GQ9BYE4 73 aa5.68□□□□□ -1.5
CCDC88A-211ENST00000471947 KMT2DO14686 5537 aa5.68□□□□□ -1.5
CCDC88A-211ENST00000471947 MT1BP07438 61 aa5.54□□□□□ -1.52
CCDC88A-211ENST00000471947 KRTAP10-12P60413 245 aa5.52□□□□□ -1.53
CCDC88A-211ENST00000471947 PRO2289Q9P1D8 64 aa5.52□□□□□ -1.53
CCDC88A-211ENST00000471947 KRTAP10-7P60409 375 aaPredicted RBP5.51□□□□□ -1.53
CCDC88A-211ENST00000471947 MT1XP80297 61 aa5.47□□□□□ -1.53
CCDC88A-211ENST00000471947 KRTAP9-3Q9BYQ3 159 aa5.47□□□□□ -1.53
CCDC88A-211ENST00000471947 LCE2BO14633 110 aa5.45□□□□□ -1.54
CCDC88A-211ENST00000471947 KRTAP10-5P60370 271 aa5.45□□□□□ -1.54
CCDC88A-211ENST00000471947 KRTAP4-8A0A0G2JLE6 195 aa5.42□□□□□ -1.54
CCDC88A-211ENST00000471947 KRTAP4-8Q9BYQ9 185 aa5.42□□□□□ -1.54
CCDC88A-211ENST00000471947 KRTAP12-3P60328 96 aa5.41□□□□□ -1.54
CCDC88A-211ENST00000471947 KRTAP19-8Q3LI54 63 aa5.38□□□□□ -1.55
CCDC88A-211ENST00000471947 DSTQ03001 7570 aaKnown RBP5.31□□□□□ -1.56
CCDC88A-211ENST00000471947 KRTAP19-5Q3LI72 72 aa5.27□□□□□ -1.57
CCDC88A-211ENST00000471947 OBSCNQ5VST9 7968 aa5.26□□□□□ -1.57
CCDC88A-211ENST00000471947 LCE2AQ5TA79 106 aaPredicted RBP5.23□□□□□ -1.57
CCDC88A-211ENST00000471947 CRCT1Q9UGL9 99 aa5.22□□□□□ -1.57
CCDC88A-211ENST00000471947 SSPOA2VEC9 5147 aa5.18□□□□□ -1.58
CCDC88A-211ENST00000471947 KRTAP8-1Q8IUC2 63 aa5.17□□□□□ -1.58
CCDC88A-211ENST00000471947 FCGBPQ9Y6R7 5405 aaPredicted RBP5.16□□□□□ -1.58
CCDC88A-211ENST00000471947 KRTAP4-7Q9BYR0 210 aa5.15□□□□□ -1.58
CCDC88A-211ENST00000471947 MUC12Q9UKN1 5478 aa5.13□□□□□ -1.59
CCDC88A-211ENST00000471947 SYNE1Q8NF91 8797 aaKnown RBP5.13□□□□□ -1.59
CCDC88A-211ENST00000471947 KRTAP23-1A1A580 65 aa5.12□□□□□ -1.59
CCDC88A-211ENST00000471947 LCE2DQ5TA82 110 aaPredicted RBP5.11□□□□□ -1.59
CCDC88A-211ENST00000471947 SYNE2Q8WXH0 6885 aaKnown RBP4.94□□□□□ -1.62
CCDC88A-211ENST00000471947 LCE3CQ5T5A8 94 aa4.92□□□□□ -1.62
CCDC88A-211ENST00000471947 SPRR2FQ96RM1 72 aa4.88□□□□□ -1.63
CCDC88A-211ENST00000471947 KRTAP4-3Q9BYR4 195 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms