RNA–Protein interactions for RNA: ENST00000441587.2

ALMS1-IT1-201, ALMS1 intronic transcript 1, humanhuman

TSL 1 (best) BASIC

Gene ALMS1-IT1, Length 2,107 nt, Biotype sense intronic.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1-IT1-201ENST00000441587 LYSTQ99698 3801 aa3.1□□□□□ -1.91
ALMS1-IT1-201ENST00000441587 DNAH9Q9NYC9 4486 aa3.09□□□□□ -1.92
ALMS1-IT1-201ENST00000441587 H0YAA0 97 aa3.08□□□□□ -1.92
ALMS1-IT1-201ENST00000441587 DNAH10Q8IVF4 4471 aa3.07□□□□□ -1.92
ALMS1-IT1-201ENST00000441587 DYNC2H1Q8NCM8 4307 aaKnown RBP3.07□□□□□ -1.92
ALMS1-IT1-201ENST00000441587 CSMD3Q7Z407 3707 aa3.07□□□□□ -1.92
ALMS1-IT1-201ENST00000441587 PRLHP81277 87 aa3.07□□□□□ -1.92
ALMS1-IT1-201ENST00000441587 PLAC4Q8WY50 150 aa3.06□□□□□ -1.92
ALMS1-IT1-201ENST00000441587 CRIPTQ9P021 101 aa3.06□□□□□ -1.92
ALMS1-IT1-201ENST00000441587 DNAH7Q8WXX0 4024 aa3.05□□□□□ -1.92
ALMS1-IT1-201ENST00000441587 KRTAP5-4Q6L8H1 288 aa3.05□□□□□ -1.92
ALMS1-IT1-201ENST00000441587 Q6ZSA8 131 aa3.05□□□□□ -1.92
ALMS1-IT1-201ENST00000441587 Q6ZRN7 208 aaPredicted RBP3.04□□□□□ -1.92
ALMS1-IT1-201ENST00000441587 SRRM2Q9UQ35 2752 aaKnown RBP3.04□□□□□ -1.92
ALMS1-IT1-201ENST00000441587 PLECQ15149 4684 aaKnown RBP3.03□□□□□ -1.92
ALMS1-IT1-201ENST00000441587 KRTAP2-2Q9BYT5 123 aa3.02□□□□□ -1.93
ALMS1-IT1-201ENST00000441587 PRKDCP78527 4128 aaKnown RBP3.02□□□□□ -1.93
ALMS1-IT1-201ENST00000441587 TGP01266 2768 aa3□□□□□ -1.93
ALMS1-IT1-201ENST00000441587 VPS13DQ5THJ4 4388 aa3□□□□□ -1.93
ALMS1-IT1-201ENST00000441587 MEGF8Q7Z7M0 2845 aa3□□□□□ -1.93
ALMS1-IT1-201ENST00000441587 H1FX-AS1Q4G0G2 97 aa3□□□□□ -1.93
ALMS1-IT1-201ENST00000441587 STARD9Q9P2P6 4700 aa3□□□□□ -1.93
ALMS1-IT1-201ENST00000441587 KRTAP13-1Q8IUC0 172 aa2.99□□□□□ -1.93
ALMS1-IT1-201ENST00000441587 HECTD4Q9Y4D8 3996 aa2.99□□□□□ -1.93
ALMS1-IT1-201ENST00000441587 KRTAP13-2Q52LG2 175 aa2.98□□□□□ -1.93
ALMS1-IT1-201ENST00000441587 KMT2AQ03164 3969 aa2.97□□□□□ -1.93
ALMS1-IT1-201ENST00000441587 KRTAP10-8P60410 259 aa2.96□□□□□ -1.93
ALMS1-IT1-201ENST00000441587 PP632Q6XCG6 107 aa2.96□□□□□ -1.94
ALMS1-IT1-201ENST00000441587 KRTAP5-11Q6L8G4 156 aa2.94□□□□□ -1.94
ALMS1-IT1-201ENST00000441587 SPINK1P00995 79 aa2.93□□□□□ -1.94
ALMS1-IT1-201ENST00000441587 DNHD1Q96M86 4753 aa2.93□□□□□ -1.94
ALMS1-IT1-201ENST00000441587 DNAH17Q9UFH2 4485 aa2.93□□□□□ -1.94
ALMS1-IT1-201ENST00000441587 DNAH2Q9P225 4427 aa2.93□□□□□ -1.94
ALMS1-IT1-201ENST00000441587 FRAS1Q86XX4 4008 aa2.92□□□□□ -1.94
ALMS1-IT1-201ENST00000441587 DNAH6Q9C0G6 4158 aa2.91□□□□□ -1.94
ALMS1-IT1-201ENST00000441587 COX6B2Q6YFQ2 88 aa2.91□□□□□ -1.94
ALMS1-IT1-201ENST00000441587 FLG2Q5D862 2391 aaPredicted RBP2.91□□□□□ -1.94
ALMS1-IT1-201ENST00000441587 KRTAP10-12P60413 245 aa2.9□□□□□ -1.94
ALMS1-IT1-201ENST00000441587 RPL37P61927 97 aaKnown RBP2.9□□□□□ -1.94
ALMS1-IT1-201ENST00000441587 KRTAP5-1Q6L8H4 278 aa2.9□□□□□ -1.95
ALMS1-IT1-201ENST00000441587 C10orf95Q9H7T3 257 aa2.9□□□□□ -1.95
ALMS1-IT1-201ENST00000441587 DNAH8Q96JB1 4490 aa2.89□□□□□ -1.95
ALMS1-IT1-201ENST00000441587 LCE3CQ5T5A8 94 aa2.89□□□□□ -1.95
ALMS1-IT1-201ENST00000441587 KRTAP12-2P59991 146 aa2.89□□□□□ -1.95
ALMS1-IT1-201ENST00000441587 SPINK6Q6UWN8 80 aa2.88□□□□□ -1.95
ALMS1-IT1-201ENST00000441587 KRTAP4-4Q9BYR3 166 aa2.88□□□□□ -1.95
ALMS1-IT1-201ENST00000441587 KRTAP10-1P60331 282 aa2.86□□□□□ -1.95
ALMS1-IT1-201ENST00000441587 DNAH11Q96DT5 4516 aa2.86□□□□□ -1.95
ALMS1-IT1-201ENST00000441587 DNAH5Q8TE73 4624 aa2.85□□□□□ -1.95
ALMS1-IT1-201ENST00000441587 PKD1P98161 4303 aa2.84□□□□□ -1.95
ALMS1-IT1-201ENST00000441587 A0A1B0GVY2 172 aa2.84□□□□□ -1.96
ALMS1-IT1-201ENST00000441587 HYDINQ4G0P3 5121 aa2.82□□□□□ -1.96
ALMS1-IT1-201ENST00000441587 FAT2Q9NYQ8 4349 aa2.82□□□□□ -1.96
ALMS1-IT1-201ENST00000441587 VPS13BQ7Z7G8 4022 aa2.82□□□□□ -1.96
ALMS1-IT1-201ENST00000441587 LRP1BQ9NZR2 4599 aa2.8□□□□□ -1.96
ALMS1-IT1-201ENST00000441587 PKHD1P08F94 4074 aa2.79□□□□□ -1.96
ALMS1-IT1-201ENST00000441587 KRTAP10-7P60409 375 aaPredicted RBP2.78□□□□□ -1.96
ALMS1-IT1-201ENST00000441587 S4R3F8 94 aa2.77□□□□□ -1.97
ALMS1-IT1-201ENST00000441587 SMR3BP02814 79 aaPredicted RBP2.75□□□□□ -1.97
ALMS1-IT1-201ENST00000441587 RPS29P62273 56 aaKnown RBP2.75□□□□□ -1.97
ALMS1-IT1-201ENST00000441587 SACSQ9NZJ4 4579 aa2.75□□□□□ -1.97
ALMS1-IT1-201ENST00000441587 A0A0D9SG42 100 aa2.74□□□□□ -1.97
ALMS1-IT1-201ENST00000441587 KRTAP13-4Q3LI77 160 aa2.73□□□□□ -1.97
ALMS1-IT1-201ENST00000441587 KRTAP10-6P60371 365 aaPredicted RBP2.72□□□□□ -1.97
ALMS1-IT1-201ENST00000441587 DYNC1H1Q14204 4646 aaKnown RBP2.71□□□□□ -1.98
ALMS1-IT1-201ENST00000441587 BIRC6Q9NR09 4857 aa2.71□□□□□ -1.98
ALMS1-IT1-201ENST00000441587 KRTAP10-4P60372 401 aaPredicted RBP2.69□□□□□ -1.98
ALMS1-IT1-201ENST00000441587 KIAA1109Q2LD37 5005 aa2.69□□□□□ -1.98
ALMS1-IT1-201ENST00000441587 KRTAP5-2Q701N4 177 aa2.68□□□□□ -1.98
ALMS1-IT1-201ENST00000441587 APOBP04114 4563 aaKnown RBP2.68□□□□□ -1.98
ALMS1-IT1-201ENST00000441587 PCLOQ9Y6V0 5065 aa2.68□□□□□ -1.98
ALMS1-IT1-201ENST00000441587 SPRR5A0A1B0GTR4 108 aa2.68□□□□□ -1.98
ALMS1-IT1-201ENST00000441587 RYR2Q92736 4967 aa2.68□□□□□ -1.98
ALMS1-IT1-201ENST00000441587 FAT1Q14517 4588 aa2.67□□□□□ -1.98
ALMS1-IT1-201ENST00000441587 PKHD1L1Q86WI1 4243 aa2.67□□□□□ -1.98
ALMS1-IT1-201ENST00000441587 C9orf92A6NGG3 77 aa2.67□□□□□ -1.98
ALMS1-IT1-201ENST00000441587 KRTAP12-1P59990 96 aa2.67□□□□□ -1.98
ALMS1-IT1-201ENST00000441587 KMT2CQ8NEZ4 4911 aaKnown RBP2.65□□□□□ -1.99
ALMS1-IT1-201ENST00000441587 LCE3EQ5T5B0 92 aa2.65□□□□□ -1.99
ALMS1-IT1-201ENST00000441587 Q5VSD8 79 aa2.62□□□□□ -1.99
ALMS1-IT1-201ENST00000441587 DMBT1Q9UGM3 2413 aaPredicted RBP2.62□□□□□ -1.99
ALMS1-IT1-201ENST00000441587 RYR3Q15413 4870 aa2.62□□□□□ -1.99
ALMS1-IT1-201ENST00000441587 TNXBP22105 4242 aa2.59□□□□□ -1.99
ALMS1-IT1-201ENST00000441587 HSPG2P98160 4391 aa2.59□□□□□ -2
ALMS1-IT1-201ENST00000441587 LRP1Q07954 4544 aaKnown RBP2.58□□□□□ -2
ALMS1-IT1-201ENST00000441587 M0QZ58 72 aa2.57□□□□□ -2
ALMS1-IT1-201ENST00000441587 KRTAP10-5P60370 271 aa2.56□□□□□ -2
ALMS1-IT1-201ENST00000441587 RYR1P21817 5038 aa2.56□□□□□ -2
ALMS1-IT1-201ENST00000441587 FAT3Q8TDW7 4589 aa2.56□□□□□ -2
ALMS1-IT1-201ENST00000441587 UBR4Q5T4S7 5183 aa2.55□□□□□ -2
ALMS1-IT1-201ENST00000441587 AHNAKQ09666 5890 aaKnown RBP2.55□□□□□ -2
ALMS1-IT1-201ENST00000441587 MT1HL1P0DM35 61 aa2.53□□□□□ -2.01
ALMS1-IT1-201ENST00000441587 MYCBP2O75592 4640 aa2.52□□□□□ -2.01
ALMS1-IT1-201ENST00000441587 KRTAP5-8O75690 187 aa2.5□□□□□ -2.01
ALMS1-IT1-201ENST00000441587 HERC2O95714 4834 aa2.47□□□□□ -2.01
ALMS1-IT1-201ENST00000441587 LCE1EQ5T753 118 aa2.47□□□□□ -2.01
ALMS1-IT1-201ENST00000441587 EPPK1P58107 5090 aaKnown RBP2.46□□□□□ -2.02
ALMS1-IT1-201ENST00000441587 LRP2P98164 4655 aa2.43□□□□□ -2.02
ALMS1-IT1-201ENST00000441587 KRTAP4-3Q9BYR4 195 aa2.43□□□□□ -2.02
ALMS1-IT1-201ENST00000441587 ABCA13Q86UQ4 5058 aa2.41□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 163 ms