RNA–Protein interactions for RNA: ENST00000391814.5

SHANK1-204, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHANK1, Length 6,622 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-204ENST00000391814 TRRAPQ9Y4A5 3859 aa6.79□□□□□ -1.32
SHANK1-204ENST00000391814 MEGF8Q7Z7M0 2845 aa6.72□□□□□ -1.33
SHANK1-204ENST00000391814 COL7A1Q02388 2944 aa6.69□□□□□ -1.34
SHANK1-204ENST00000391814 KRTAP10-4P60372 401 aaPredicted RBP6.66□□□□□ -1.34
SHANK1-204ENST00000391814 KRTAP8-1Q8IUC2 63 aa6.63□□□□□ -1.35
SHANK1-204ENST00000391814 DNAH1Q9P2D7 4330 aa6.47□□□□□ -1.37
SHANK1-204ENST00000391814 DNAH3Q8TD57 4116 aa6.45□□□□□ -1.38
SHANK1-204ENST00000391814 DNAH2Q9P225 4427 aa6.44□□□□□ -1.38
SHANK1-204ENST00000391814 DNAH8Q96JB1 4490 aa6.43□□□□□ -1.38
SHANK1-204ENST00000391814 DNAH10Q8IVF4 4471 aa6.38□□□□□ -1.39
SHANK1-204ENST00000391814 DNAH9Q9NYC9 4486 aa6.34□□□□□ -1.39
SHANK1-204ENST00000391814 DNAH11Q96DT5 4516 aa6.28□□□□□ -1.4
SHANK1-204ENST00000391814 ZNF469Q96JG9 3925 aaPredicted RBP6.26□□□□□ -1.41
SHANK1-204ENST00000391814 KRTAP4-1Q9BYQ7 146 aa6.24□□□□□ -1.41
SHANK1-204ENST00000391814 FRAS1Q86XX4 4008 aa6.22□□□□□ -1.41
SHANK1-204ENST00000391814 SPRR2FQ96RM1 72 aa6.22□□□□□ -1.41
SHANK1-204ENST00000391814 DNAH17Q9UFH2 4485 aa6.21□□□□□ -1.42
SHANK1-204ENST00000391814 ANK2Q01484 3957 aa6.21□□□□□ -1.42
SHANK1-204ENST00000391814 KRTAP19-5Q3LI72 72 aa6.2□□□□□ -1.42
SHANK1-204ENST00000391814 LCE3CQ5T5A8 94 aa6.2□□□□□ -1.42
SHANK1-204ENST00000391814 CMYA5Q8N3K9 4069 aa6.19□□□□□ -1.42
SHANK1-204ENST00000391814 KRTAP10-7P60409 375 aaPredicted RBP6.15□□□□□ -1.42
SHANK1-204ENST00000391814 DNAH5Q8TE73 4624 aa6.15□□□□□ -1.43
SHANK1-204ENST00000391814 DNAH6Q9C0G6 4158 aa6.12□□□□□ -1.43
SHANK1-204ENST00000391814 PLECQ15149 4684 aaKnown RBP6.09□□□□□ -1.43
SHANK1-204ENST00000391814 SPRR2GQ9BYE4 73 aa6.09□□□□□ -1.43
SHANK1-204ENST00000391814 MT1HP80294 61 aa6.08□□□□□ -1.44
SHANK1-204ENST00000391814 VPS13DQ5THJ4 4388 aa6.05□□□□□ -1.44
SHANK1-204ENST00000391814 MT2AP02795 61 aa6.01□□□□□ -1.45
SHANK1-204ENST00000391814 DNAH7Q8WXX0 4024 aa5.98□□□□□ -1.45
SHANK1-204ENST00000391814 DYNC2H1Q8NCM8 4307 aaKnown RBP5.96□□□□□ -1.46
SHANK1-204ENST00000391814 SPRR2EP22531 72 aa5.96□□□□□ -1.46
SHANK1-204ENST00000391814 SPRR2BP35325 72 aa5.96□□□□□ -1.46
SHANK1-204ENST00000391814 SPRR2AP35326 72 aa5.96□□□□□ -1.46
SHANK1-204ENST00000391814 FAT2Q9NYQ8 4349 aa5.95□□□□□ -1.46
SHANK1-204ENST00000391814 MT1FP04733 61 aa5.93□□□□□ -1.46
SHANK1-204ENST00000391814 SACSQ9NZJ4 4579 aa5.93□□□□□ -1.46
SHANK1-204ENST00000391814 VPS13BQ7Z7G8 4022 aa5.92□□□□□ -1.46
SHANK1-204ENST00000391814 LCE3BQ5TA77 95 aa5.89□□□□□ -1.47
SHANK1-204ENST00000391814 PRKDCP78527 4128 aaKnown RBP5.89□□□□□ -1.47
SHANK1-204ENST00000391814 KMT2AQ03164 3969 aa5.89□□□□□ -1.47
SHANK1-204ENST00000391814 DNHD1Q96M86 4753 aa5.85□□□□□ -1.47
SHANK1-204ENST00000391814 STARD9Q9P2P6 4700 aa5.84□□□□□ -1.48
SHANK1-204ENST00000391814 LYSTQ99698 3801 aa5.83□□□□□ -1.48
SHANK1-204ENST00000391814 LRP1BQ9NZR2 4599 aa5.8□□□□□ -1.48
SHANK1-204ENST00000391814 KRTAP12-4P60329 112 aa5.79□□□□□ -1.48
SHANK1-204ENST00000391814 DYNC1H1Q14204 4646 aaKnown RBP5.78□□□□□ -1.48
SHANK1-204ENST00000391814 FAT1Q14517 4588 aa5.76□□□□□ -1.49
SHANK1-204ENST00000391814 SPRR5A0A1B0GTR4 108 aa5.75□□□□□ -1.49
SHANK1-204ENST00000391814 SPRR2DP22532 72 aa5.74□□□□□ -1.49
SHANK1-204ENST00000391814 HECTD4Q9Y4D8 3996 aa5.71□□□□□ -1.5
SHANK1-204ENST00000391814 RYR1P21817 5038 aa5.7□□□□□ -1.5
SHANK1-204ENST00000391814 APOBP04114 4563 aaKnown RBP5.67□□□□□ -1.5
SHANK1-204ENST00000391814 MT1GP13640 62 aa5.66□□□□□ -1.5
SHANK1-204ENST00000391814 KRTAP19-4Q3LI73 84 aa5.6□□□□□ -1.51
SHANK1-204ENST00000391814 MT1XP80297 61 aa5.6□□□□□ -1.51
SHANK1-204ENST00000391814 KRTAP19-1Q8IUB9 90 aa5.56□□□□□ -1.52
SHANK1-204ENST00000391814 LCE2BO14633 110 aa5.55□□□□□ -1.52
SHANK1-204ENST00000391814 KRTAP19-8Q3LI54 63 aa5.52□□□□□ -1.53
SHANK1-204ENST00000391814 KRTAP17-1Q9BYP8 105 aa5.5□□□□□ -1.53
SHANK1-204ENST00000391814 FAT3Q8TDW7 4589 aa5.46□□□□□ -1.54
SHANK1-204ENST00000391814 LCE3DQ9BYE3 92 aa5.44□□□□□ -1.54
SHANK1-204ENST00000391814 RYR3Q15413 4870 aa5.43□□□□□ -1.54
SHANK1-204ENST00000391814 KRTAP4-8A0A0G2JLE6 195 aa5.42□□□□□ -1.54
SHANK1-204ENST00000391814 KRTAP4-8Q9BYQ9 185 aa5.42□□□□□ -1.54
SHANK1-204ENST00000391814 MT1BP07438 61 aa5.39□□□□□ -1.55
SHANK1-204ENST00000391814 PKD1P98161 4303 aa5.38□□□□□ -1.55
SHANK1-204ENST00000391814 LCE3EQ5T5B0 92 aa5.36□□□□□ -1.55
SHANK1-204ENST00000391814 LCE2CQ5TA81 110 aa5.33□□□□□ -1.56
SHANK1-204ENST00000391814 MYCBP2O75592 4640 aa5.31□□□□□ -1.56
SHANK1-204ENST00000391814 MT4P47944 62 aa5.31□□□□□ -1.56
SHANK1-204ENST00000391814 KRTAP4-7Q9BYR0 210 aa5.31□□□□□ -1.56
SHANK1-204ENST00000391814 LPAP08519 4548 aa5.29□□□□□ -1.56
SHANK1-204ENST00000391814 LCE2DQ5TA82 110 aaPredicted RBP5.28□□□□□ -1.56
SHANK1-204ENST00000391814 PKHD1L1Q86WI1 4243 aa5.26□□□□□ -1.57
SHANK1-204ENST00000391814 LRP1Q07954 4544 aaKnown RBP5.26□□□□□ -1.57
SHANK1-204ENST00000391814 PRM1P04553 51 aa5.24□□□□□ -1.57
SHANK1-204ENST00000391814 KRTAP9-8Q9BYQ0 159 aa5.22□□□□□ -1.57
SHANK1-204ENST00000391814 LCE1BQ5T7P3 118 aa5.15□□□□□ -1.58
SHANK1-204ENST00000391814 TNXBP22105 4242 aa5.15□□□□□ -1.59
SHANK1-204ENST00000391814 HSPG2P98160 4391 aa5.14□□□□□ -1.59
SHANK1-204ENST00000391814 KIAA1109Q2LD37 5005 aa5.13□□□□□ -1.59
SHANK1-204ENST00000391814 PKHD1P08F94 4074 aa5.12□□□□□ -1.59
SHANK1-204ENST00000391814 MT1LQ93083 61 aa5.1□□□□□ -1.59
SHANK1-204ENST00000391814 KRTAP9-3Q9BYQ3 159 aa5.1□□□□□ -1.59
SHANK1-204ENST00000391814 LOC100996750A0A140TA64 210 aa5.06□□□□□ -1.6
SHANK1-204ENST00000391814 RYR2Q92736 4967 aa5.05□□□□□ -1.6
SHANK1-204ENST00000391814 FLGP20930 4061 aaPredicted RBP5.05□□□□□ -1.6
SHANK1-204ENST00000391814 LCE1DQ5T752 114 aa5.03□□□□□ -1.6
SHANK1-204ENST00000391814 KRTAP19-3Q7Z4W3 81 aa5.01□□□□□ -1.61
SHANK1-204ENST00000391814 MT1EP04732 61 aa4.99□□□□□ -1.61
SHANK1-204ENST00000391814 KRTAP9-2Q9BYQ4 174 aa4.97□□□□□ -1.61
SHANK1-204ENST00000391814 HERC2O95714 4834 aa4.97□□□□□ -1.61
SHANK1-204ENST00000391814 HERC1Q15751 4861 aa4.96□□□□□ -1.62
SHANK1-204ENST00000391814 MUC17Q685J3 4493 aa4.95□□□□□ -1.62
SHANK1-204ENST00000391814 HYDINQ4G0P3 5121 aa4.95□□□□□ -1.62
SHANK1-204ENST00000391814 LRP2P98164 4655 aa4.93□□□□□ -1.62
SHANK1-204ENST00000391814 BIRC6Q9NR09 4857 aa4.9□□□□□ -1.62
SHANK1-204ENST00000391814 KRTAP4-3Q9BYR4 195 aa4.89□□□□□ -1.63
SHANK1-204ENST00000391814 PCLOQ9Y6V0 5065 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms