RNA–Protein interactions for RNA: ENST00000391814.5

SHANK1-204, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHANK1, Length 6,622 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-204ENST00000391814 DCAF8L2P0C7V8 631 aa26.74■■□□□ 1.87
SHANK1-204ENST00000391814 PELP1Q8IZL8 1130 aaKnown RBP26.17■■□□□ 1.78
SHANK1-204ENST00000391814 SUPT5HO00267 1087 aaKnown RBP26.03■■□□□ 1.76
SHANK1-204ENST00000391814 EHMT2Q96KQ7 1210 aa25.63■■□□□ 1.69
SHANK1-204ENST00000391814 MYT1Q01538 1121 aa25.41■■□□□ 1.66
SHANK1-204ENST00000391814 ERICH6Q7L0X2 663 aa25.39■■□□□ 1.65
SHANK1-204ENST00000391814 SHROOM4Q9ULL8 1493 aa25.38■■□□□ 1.65
SHANK1-204ENST00000391814 PCGF6Q9BYE7 350 aa25.32■■□□□ 1.64
SHANK1-204ENST00000391814 CENPBP07199 599 aaPredicted RBP25.21■■□□□ 1.63
SHANK1-204ENST00000391814 CCER1Q8TC90 406 aaPredicted RBP24.94■■□□□ 1.58
SHANK1-204ENST00000391814 TTBK1Q5TCY1 1321 aaPredicted RBP24.92■■□□□ 1.58
SHANK1-204ENST00000391814 ZEB1P37275 1124 aaPredicted RBP24.82■■□□□ 1.56
SHANK1-204ENST00000391814 YTHDC1Q96MU7 727 aaKnown RBP24.78■■□□□ 1.56
SHANK1-204ENST00000391814 APLP2Q06481 763 aa24.75■■□□□ 1.55
SHANK1-204ENST00000391814 FAM9AQ8IZU1 332 aaPredicted RBP24.66■■□□□ 1.54
SHANK1-204ENST00000391814 NISCHQ9Y2I1 1504 aa24.59■■□□□ 1.53
SHANK1-204ENST00000391814 NEFLP07196 543 aa24.46■■□□□ 1.51
SHANK1-204ENST00000391814 HRCP23327 699 aa24.24■■□□□ 1.47
SHANK1-204ENST00000391814 RANGAP1P46060 587 aaPredicted RBP24.13■■□□□ 1.45
SHANK1-204ENST00000391814 PPARGC1BQ86YN6 1023 aaKnown RBP23.97■■□□□ 1.43
SHANK1-204ENST00000391814 TRIM26Q12899 539 aaPredicted RBP23.93■■□□□ 1.42
SHANK1-204ENST00000391814 TRIM41Q8WV44 630 aa23.92■■□□□ 1.42
SHANK1-204ENST00000391814 DAXXQ9UER7 740 aaPredicted RBP23.86■■□□□ 1.41
SHANK1-204ENST00000391814 ATP1B4Q9UN42 357 aaPredicted RBP23.77■■□□□ 1.4
SHANK1-204ENST00000391814 UBTFP17480 764 aaKnown RBP23.66■■□□□ 1.38
SHANK1-204ENST00000391814 RTL5Q5HYW3 569 aaPredicted RBP23.62■■□□□ 1.37
SHANK1-204ENST00000391814 GTF3C3Q9Y5Q9 886 aa23.53■■□□□ 1.36
SHANK1-204ENST00000391814 DIEXFQ68CQ4 756 aaKnown RBP23.5■■□□□ 1.35
SHANK1-204ENST00000391814 ZNF316A6NFI3 1004 aaPredicted RBP23.4■■□□□ 1.34
SHANK1-204ENST00000391814 BCANQ96GW7 911 aa23.36■■□□□ 1.33
SHANK1-204ENST00000391814 LOC105371045A0A1W2PR82 267 aa23.35■■□□□ 1.33
SHANK1-204ENST00000391814 POLR3GLQ9BT43 218 aa23.35■■□□□ 1.33
SHANK1-204ENST00000391814 CNGB1Q14028 1251 aaPredicted RBP23.31■■□□□ 1.32
SHANK1-204ENST00000391814 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.28■■□□□ 1.32
SHANK1-204ENST00000391814 ITGAEP38570 1179 aa23.25■■□□□ 1.31
SHANK1-204ENST00000391814 HNRNPUL2Q1KMD3 747 aaKnown RBP23.23■■□□□ 1.31
SHANK1-204ENST00000391814 CLSPNQ9HAW4 1339 aa23.07■■□□□ 1.28
SHANK1-204ENST00000391814 ACIN1Q9UKV3 1341 aaKnown RBP23.05■■□□□ 1.28
SHANK1-204ENST00000391814 CDK11AQ9UQ88 783 aaPredicted RBP23.04■■□□□ 1.28
SHANK1-204ENST00000391814 CHIC1Q5VXU3 224 aa23.02■■□□□ 1.28
SHANK1-204ENST00000391814 MYT1LQ9UL68 1186 aa22.92■■□□□ 1.26
SHANK1-204ENST00000391814 EIF5BO60841 1220 aaKnown RBP22.9■■□□□ 1.26
SHANK1-204ENST00000391814 SLC4A1APQ9BWU0 796 aaKnown RBP22.83■■□□□ 1.25
SHANK1-204ENST00000391814 ANP32AP39687 249 aaKnown RBP22.67■■□□□ 1.22
SHANK1-204ENST00000391814 ANP32CO43423 234 aa22.67■■□□□ 1.22
SHANK1-204ENST00000391814 NEUROD1Q13562 356 aa22.66■■□□□ 1.22
SHANK1-204ENST00000391814 NPM2Q86SE8 214 aaKnown RBP22.64■■□□□ 1.22
SHANK1-204ENST00000391814 SCAF1Q9H7N4 1312 aaKnown RBP22.6■■□□□ 1.21
SHANK1-204ENST00000391814 BCL11AQ9H165 835 aa22.57■■□□□ 1.2
SHANK1-204ENST00000391814 GLIPR1L2Q4G1C9 344 aa22.56■■□□□ 1.2
SHANK1-204ENST00000391814 FKBP8Q14318 412 aa22.52■■□□□ 1.2
SHANK1-204ENST00000391814 NBR1Q14596 966 aa22.5■■□□□ 1.19
SHANK1-204ENST00000391814 FAM50AQ14320 339 aaKnown RBP22.49■■□□□ 1.19
SHANK1-204ENST00000391814 TRIM52Q96A61 297 aa22.37■■□□□ 1.17
SHANK1-204ENST00000391814 CANXP27824 592 aaKnown RBP22.32■■□□□ 1.16
SHANK1-204ENST00000391814 ZBTB47Q9UFB7 747 aaPredicted RBP22.27■■□□□ 1.16
SHANK1-204ENST00000391814 ZNF326Q5BKZ1 582 aaKnown RBP22.24■■□□□ 1.15
SHANK1-204ENST00000391814 ANP32BQ92688 251 aaKnown RBP22.24■■□□□ 1.15
SHANK1-204ENST00000391814 SLC24A1O60721 1099 aa22.22■■□□□ 1.15
SHANK1-204ENST00000391814 ARXQ96QS3 562 aa22.2■■□□□ 1.14
SHANK1-204ENST00000391814 ANP32EQ9BTT0 268 aa22.15■■□□□ 1.14
SHANK1-204ENST00000391814 HNRNPUQ00839 825 aaKnown RBP eCLIP22.04■■□□□ 1.12
SHANK1-204ENST00000391814 HSP90AA1P07900 732 aaKnown RBP22.02■■□□□ 1.12
SHANK1-204ENST00000391814 IRX6P78412 446 aaPredicted RBP21.99■■□□□ 1.11
SHANK1-204ENST00000391814 FAM9BQ8IZU0 186 aa21.95■■□□□ 1.1
SHANK1-204ENST00000391814 RTN4Q9NQC3 1192 aaKnown RBP21.94■■□□□ 1.1
SHANK1-204ENST00000391814 MIER1Q8N108 512 aa21.93■■□□□ 1.1
SHANK1-204ENST00000391814 CCDC136Q96JN2 1154 aa21.93■■□□□ 1.1
SHANK1-204ENST00000391814 UPF2Q9HAU5 1272 aaKnown RBP21.92■■□□□ 1.1
SHANK1-204ENST00000391814 DDX10Q13206 875 aaKnown RBP21.91■■□□□ 1.1
SHANK1-204ENST00000391814 DCAF1Q9Y4B6 1507 aa21.89■■□□□ 1.1
SHANK1-204ENST00000391814 SALL2Q9Y467 1007 aaPredicted RBP21.82■■□□□ 1.08
SHANK1-204ENST00000391814 NEFMP07197 916 aa21.7■■□□□ 1.06
SHANK1-204ENST00000391814 TRIM44Q96DX7 344 aaPredicted RBP21.7■■□□□ 1.06
SHANK1-204ENST00000391814 NAP1L5Q96NT1 182 aaPredicted RBP21.69■■□□□ 1.06
SHANK1-204ENST00000391814 DDRGK1Q96HY6 314 aa21.69■■□□□ 1.06
SHANK1-204ENST00000391814 TONSLQ96HA7 1378 aa21.67■■□□□ 1.06
SHANK1-204ENST00000391814 PLPPR3Q6T4P5 718 aa21.66■■□□□ 1.06
SHANK1-204ENST00000391814 TNNT2P45379 298 aaPredicted RBP21.64■■□□□ 1.06
SHANK1-204ENST00000391814 LAS1LQ9Y4W2 734 aaKnown RBP21.6■■□□□ 1.05
SHANK1-204ENST00000391814 PABPN1Q86U42 306 aaKnown RBP eCLIP21.57■■□□□ 1.04
SHANK1-204ENST00000391814 P3H3Q8IVL6 736 aa21.56■■□□□ 1.04
SHANK1-204ENST00000391814 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.55■■□□□ 1.04
SHANK1-204ENST00000391814 MRS2Q9HD23 443 aa21.55■■□□□ 1.04
SHANK1-204ENST00000391814 DEKP35659 375 aaKnown RBP21.55■■□□□ 1.04
SHANK1-204ENST00000391814 FBLN2P98095 1184 aa21.55■■□□□ 1.04
SHANK1-204ENST00000391814 NOP58Q9Y2X3 529 aaKnown RBP21.55■■□□□ 1.04
SHANK1-204ENST00000391814 TMC1Q8TDI8 760 aa21.54■■□□□ 1.04
SHANK1-204ENST00000391814 HIRIP3Q9BW71 556 aaPredicted RBP21.53■■□□□ 1.04
SHANK1-204ENST00000391814 BECN1Q14457 450 aa21.53■■□□□ 1.04
SHANK1-204ENST00000391814 SUPT16HQ9Y5B9 1047 aaKnown RBP21.53■■□□□ 1.04
SHANK1-204ENST00000391814 ARID3CA6NKF2 412 aa21.51■■□□□ 1.03
SHANK1-204ENST00000391814 ERICH6BQ5W0A0 696 aa21.51■■□□□ 1.03
SHANK1-204ENST00000391814 PPM1GO15355 546 aaPredicted RBP21.46■■□□□ 1.03
SHANK1-204ENST00000391814 CCDC180Q9P1Z9 1646 aa21.46■■□□□ 1.03
SHANK1-204ENST00000391814 NCLP19338 710 aaKnown RBP21.45■■□□□ 1.02
SHANK1-204ENST00000391814 DNTTIP2Q5QJE6 756 aaKnown RBP21.43■■□□□ 1.02
SHANK1-204ENST00000391814 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.43■■□□□ 1.02
SHANK1-204ENST00000391814 PTMAP06454 111 aaKnown RBP21.41■■□□□ 1.02
SHANK1-204ENST00000391814 AMER1Q5JTC6 1135 aaPredicted RBP21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms