RNA–Protein interactions for RNA: ENST00000378078.4

RGP1-201, Transcript of RGP1 homolog, RAB6A GEF complex partner 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RGP1, Length 7,018 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RGP1-201ENST00000378078 COL7A1Q02388 2944 aa6.89□□□□□ -1.31
RGP1-201ENST00000378078 OTOGQ6ZRI0 2925 aa6.87□□□□□ -1.31
RGP1-201ENST00000378078 FBN3Q75N90 2809 aa6.86□□□□□ -1.31
RGP1-201ENST00000378078 SRRM2Q9UQ35 2752 aaKnown RBP6.79□□□□□ -1.32
RGP1-201ENST00000378078 SPRR2FQ96RM1 72 aa6.66□□□□□ -1.34
RGP1-201ENST00000378078 KRTAP10-4P60372 401 aaPredicted RBP6.6□□□□□ -1.35
RGP1-201ENST00000378078 DNAH9Q9NYC9 4486 aa6.59□□□□□ -1.35
RGP1-201ENST00000378078 FRAS1Q86XX4 4008 aa6.56□□□□□ -1.36
RGP1-201ENST00000378078 KRTAP10-7P60409 375 aaPredicted RBP6.54□□□□□ -1.36
RGP1-201ENST00000378078 DNAH1Q9P2D7 4330 aa6.53□□□□□ -1.36
RGP1-201ENST00000378078 DNAH10Q8IVF4 4471 aa6.51□□□□□ -1.37
RGP1-201ENST00000378078 MT1HP80294 61 aa6.5□□□□□ -1.37
RGP1-201ENST00000378078 DNAH2Q9P225 4427 aa6.5□□□□□ -1.37
RGP1-201ENST00000378078 KRTAP4-1Q9BYQ7 146 aa6.47□□□□□ -1.37
RGP1-201ENST00000378078 ANK2Q01484 3957 aa6.45□□□□□ -1.38
RGP1-201ENST00000378078 KMT2AQ03164 3969 aa6.44□□□□□ -1.38
RGP1-201ENST00000378078 KRTAP19-5Q3LI72 72 aa6.42□□□□□ -1.38
RGP1-201ENST00000378078 DNAH3Q8TD57 4116 aa6.4□□□□□ -1.38
RGP1-201ENST00000378078 CMYA5Q8N3K9 4069 aa6.4□□□□□ -1.39
RGP1-201ENST00000378078 SPRR2EP22531 72 aa6.37□□□□□ -1.39
RGP1-201ENST00000378078 SPRR2BP35325 72 aa6.37□□□□□ -1.39
RGP1-201ENST00000378078 SPRR2AP35326 72 aa6.37□□□□□ -1.39
RGP1-201ENST00000378078 KRTAP23-1A1A580 65 aa6.35□□□□□ -1.39
RGP1-201ENST00000378078 LYSTQ99698 3801 aa6.33□□□□□ -1.4
RGP1-201ENST00000378078 VPS13BQ7Z7G8 4022 aa6.29□□□□□ -1.4
RGP1-201ENST00000378078 MT2AP02795 61 aa6.27□□□□□ -1.41
RGP1-201ENST00000378078 LCE3BQ5TA77 95 aa6.27□□□□□ -1.41
RGP1-201ENST00000378078 PLECQ15149 4684 aaKnown RBP6.23□□□□□ -1.41
RGP1-201ENST00000378078 DNAH8Q96JB1 4490 aa6.22□□□□□ -1.41
RGP1-201ENST00000378078 MT1FP04733 61 aa6.2□□□□□ -1.42
RGP1-201ENST00000378078 FAT2Q9NYQ8 4349 aa6.2□□□□□ -1.42
RGP1-201ENST00000378078 DNAH7Q8WXX0 4024 aa6.19□□□□□ -1.42
RGP1-201ENST00000378078 LCE3CQ5T5A8 94 aa6.17□□□□□ -1.42
RGP1-201ENST00000378078 DNAH5Q8TE73 4624 aa6.14□□□□□ -1.43
RGP1-201ENST00000378078 SPRR2DP22532 72 aa6.12□□□□□ -1.43
RGP1-201ENST00000378078 STARD9Q9P2P6 4700 aa6.12□□□□□ -1.43
RGP1-201ENST00000378078 DNAH11Q96DT5 4516 aa6.12□□□□□ -1.43
RGP1-201ENST00000378078 PRKDCP78527 4128 aaKnown RBP6.1□□□□□ -1.43
RGP1-201ENST00000378078 DNAH17Q9UFH2 4485 aa6.08□□□□□ -1.44
RGP1-201ENST00000378078 MT1GP13640 62 aa6.04□□□□□ -1.44
RGP1-201ENST00000378078 DNAH6Q9C0G6 4158 aa6.02□□□□□ -1.45
RGP1-201ENST00000378078 SPRR2GQ9BYE4 73 aa6.01□□□□□ -1.45
RGP1-201ENST00000378078 VPS13DQ5THJ4 4388 aa6.01□□□□□ -1.45
RGP1-201ENST00000378078 LRP1BQ9NZR2 4599 aa5.99□□□□□ -1.45
RGP1-201ENST00000378078 LCE2BO14633 110 aa5.95□□□□□ -1.46
RGP1-201ENST00000378078 DYNC2H1Q8NCM8 4307 aaKnown RBP5.94□□□□□ -1.46
RGP1-201ENST00000378078 HECTD4Q9Y4D8 3996 aa5.83□□□□□ -1.48
RGP1-201ENST00000378078 FAT1Q14517 4588 aa5.82□□□□□ -1.48
RGP1-201ENST00000378078 SACSQ9NZJ4 4579 aa5.8□□□□□ -1.48
RGP1-201ENST00000378078 KRTAP12-4P60329 112 aa5.77□□□□□ -1.49
RGP1-201ENST00000378078 KRTAP4-8A0A0G2JLE6 195 aa5.77□□□□□ -1.49
RGP1-201ENST00000378078 KRTAP4-8Q9BYQ9 185 aa5.77□□□□□ -1.49
RGP1-201ENST00000378078 LPAP08519 4548 aa5.71□□□□□ -1.5
RGP1-201ENST00000378078 DYNC1H1Q14204 4646 aaKnown RBP5.7□□□□□ -1.5
RGP1-201ENST00000378078 DNHD1Q96M86 4753 aa5.68□□□□□ -1.5
RGP1-201ENST00000378078 MT4P47944 62 aa5.68□□□□□ -1.5
RGP1-201ENST00000378078 LCE2CQ5TA81 110 aa5.66□□□□□ -1.5
RGP1-201ENST00000378078 KRTAP17-1Q9BYP8 105 aa5.65□□□□□ -1.5
RGP1-201ENST00000378078 KRTAP19-1Q8IUB9 90 aa5.63□□□□□ -1.51
RGP1-201ENST00000378078 LCE2DQ5TA82 110 aaPredicted RBP5.61□□□□□ -1.51
RGP1-201ENST00000378078 SPRR5A0A1B0GTR4 108 aa5.59□□□□□ -1.51
RGP1-201ENST00000378078 APOBP04114 4563 aaKnown RBP5.58□□□□□ -1.52
RGP1-201ENST00000378078 MT1XP80297 61 aa5.58□□□□□ -1.52
RGP1-201ENST00000378078 LCE3DQ9BYE3 92 aa5.55□□□□□ -1.52
RGP1-201ENST00000378078 HSPG2P98160 4391 aa5.54□□□□□ -1.52
RGP1-201ENST00000378078 PKD1P98161 4303 aa5.53□□□□□ -1.52
RGP1-201ENST00000378078 FAT3Q8TDW7 4589 aa5.51□□□□□ -1.53
RGP1-201ENST00000378078 KRTAP4-7Q9BYR0 210 aa5.5□□□□□ -1.53
RGP1-201ENST00000378078 RYR1P21817 5038 aa5.49□□□□□ -1.53
RGP1-201ENST00000378078 PKHD1P08F94 4074 aa5.48□□□□□ -1.53
RGP1-201ENST00000378078 LCE3EQ5T5B0 92 aa5.44□□□□□ -1.54
RGP1-201ENST00000378078 LCE1BQ5T7P3 118 aa5.43□□□□□ -1.54
RGP1-201ENST00000378078 LRP1Q07954 4544 aaKnown RBP5.41□□□□□ -1.54
RGP1-201ENST00000378078 MT1BP07438 61 aa5.38□□□□□ -1.55
RGP1-201ENST00000378078 PKHD1L1Q86WI1 4243 aa5.38□□□□□ -1.55
RGP1-201ENST00000378078 MYCBP2O75592 4640 aa5.37□□□□□ -1.55
RGP1-201ENST00000378078 KRTAP19-8Q3LI54 63 aa5.37□□□□□ -1.55
RGP1-201ENST00000378078 KRTAP9-8Q9BYQ0 159 aa5.34□□□□□ -1.55
RGP1-201ENST00000378078 LCE1DQ5T752 114 aa5.33□□□□□ -1.56
RGP1-201ENST00000378078 LOC100996750A0A140TA64 210 aa5.32□□□□□ -1.56
RGP1-201ENST00000378078 TNXBP22105 4242 aa5.32□□□□□ -1.56
RGP1-201ENST00000378078 RYR3Q15413 4870 aa5.26□□□□□ -1.57
RGP1-201ENST00000378078 FLGP20930 4061 aaPredicted RBP5.24□□□□□ -1.57
RGP1-201ENST00000378078 PRM1P04553 51 aa5.23□□□□□ -1.57
RGP1-201ENST00000378078 KRTAP19-4Q3LI73 84 aa5.22□□□□□ -1.57
RGP1-201ENST00000378078 KRTAP9-3Q9BYQ3 159 aa5.22□□□□□ -1.57
RGP1-201ENST00000378078 KRTAP19-3Q7Z4W3 81 aa5.21□□□□□ -1.57
RGP1-201ENST00000378078 KRTAP4-3Q9BYR4 195 aa5.2□□□□□ -1.58
RGP1-201ENST00000378078 HYDINQ4G0P3 5121 aa5.19□□□□□ -1.58
RGP1-201ENST00000378078 KRTAP9-2Q9BYQ4 174 aa5.13□□□□□ -1.59
RGP1-201ENST00000378078 LCE5AQ5TCM9 118 aa5.11□□□□□ -1.59
RGP1-201ENST00000378078 MT1LQ93083 61 aa5.08□□□□□ -1.6
RGP1-201ENST00000378078 MT1EP04732 61 aa5.02□□□□□ -1.61
RGP1-201ENST00000378078 KRTAP4-9Q9BYQ8 210 aa5.01□□□□□ -1.61
RGP1-201ENST00000378078 MT3P25713 68 aa5□□□□□ -1.61
RGP1-201ENST00000378078 KRTAP19-6Q3LI70 58 aa4.96□□□□□ -1.62
RGP1-201ENST00000378078 MT1MQ8N339 61 aa4.95□□□□□ -1.62
RGP1-201ENST00000378078 LRP2P98164 4655 aa4.94□□□□□ -1.62
RGP1-201ENST00000378078 SYNE2Q8WXH0 6885 aaKnown RBP4.87□□□□□ -1.63
RGP1-201ENST00000378078 KRTAP20-1Q3LI63 56 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms