RNA–Protein interactions for RNA: ENST00000373779.7

PTPRU-202, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-202ENST00000373779 VPS13DQ5THJ4 4388 aa8.01□□□□□ -1.13
PTPRU-202ENST00000373779 PRO2289Q9P1D8 64 aa8□□□□□ -1.13
PTPRU-202ENST00000373779 DNAH11Q96DT5 4516 aa7.95□□□□□ -1.14
PTPRU-202ENST00000373779 DNAH3Q8TD57 4116 aa7.94□□□□□ -1.14
PTPRU-202ENST00000373779 DNAH5Q8TE73 4624 aa7.92□□□□□ -1.14
PTPRU-202ENST00000373779 DNAH8Q96JB1 4490 aa7.87□□□□□ -1.15
PTPRU-202ENST00000373779 DNAH2Q9P225 4427 aa7.84□□□□□ -1.15
PTPRU-202ENST00000373779 STARD9Q9P2P6 4700 aa7.84□□□□□ -1.16
PTPRU-202ENST00000373779 KRTAP4-5Q9BYR2 181 aa7.72□□□□□ -1.17
PTPRU-202ENST00000373779 LORP23490 312 aaPredicted RBP7.7□□□□□ -1.18
PTPRU-202ENST00000373779 ANK2Q01484 3957 aa7.67□□□□□ -1.18
PTPRU-202ENST00000373779 LRP1BQ9NZR2 4599 aa7.65□□□□□ -1.18
PTPRU-202ENST00000373779 DYNC2H1Q8NCM8 4307 aaKnown RBP7.64□□□□□ -1.19
PTPRU-202ENST00000373779 CMYA5Q8N3K9 4069 aa7.64□□□□□ -1.19
PTPRU-202ENST00000373779 DYNC1H1Q14204 4646 aaKnown RBP7.62□□□□□ -1.19
PTPRU-202ENST00000373779 SACSQ9NZJ4 4579 aa7.6□□□□□ -1.19
PTPRU-202ENST00000373779 KMT2AQ03164 3969 aa7.59□□□□□ -1.19
PTPRU-202ENST00000373779 KRTAP23-1A1A580 65 aa7.56□□□□□ -1.2
PTPRU-202ENST00000373779 PRKDCP78527 4128 aaKnown RBP7.54□□□□□ -1.2
PTPRU-202ENST00000373779 FRAS1Q86XX4 4008 aa7.54□□□□□ -1.2
PTPRU-202ENST00000373779 FAT1Q14517 4588 aa7.53□□□□□ -1.2
PTPRU-202ENST00000373779 VPS13BQ7Z7G8 4022 aa7.48□□□□□ -1.21
PTPRU-202ENST00000373779 DNHD1Q96M86 4753 aa7.48□□□□□ -1.21
PTPRU-202ENST00000373779 FAT2Q9NYQ8 4349 aa7.48□□□□□ -1.21
PTPRU-202ENST00000373779 LYSTQ99698 3801 aa7.46□□□□□ -1.22
PTPRU-202ENST00000373779 HECTD4Q9Y4D8 3996 aa7.44□□□□□ -1.22
PTPRU-202ENST00000373779 KRTAP10-12P60413 245 aa7.44□□□□□ -1.22
PTPRU-202ENST00000373779 LCE3AQ5TA76 89 aa7.39□□□□□ -1.23
PTPRU-202ENST00000373779 INE1O15225 51 aa7.39□□□□□ -1.23
PTPRU-202ENST00000373779 KRTAP4-1Q9BYQ7 146 aa7.38□□□□□ -1.23
PTPRU-202ENST00000373779 DNAH6Q9C0G6 4158 aa7.37□□□□□ -1.23
PTPRU-202ENST00000373779 DNAH7Q8WXX0 4024 aa7.36□□□□□ -1.23
PTPRU-202ENST00000373779 KRTAP12-3P60328 96 aa7.32□□□□□ -1.24
PTPRU-202ENST00000373779 APOBP04114 4563 aaKnown RBP7.27□□□□□ -1.25
PTPRU-202ENST00000373779 RYR1P21817 5038 aa7.14□□□□□ -1.27
PTPRU-202ENST00000373779 FAT3Q8TDW7 4589 aa7.08□□□□□ -1.28
PTPRU-202ENST00000373779 MYCBP2O75592 4640 aa7.08□□□□□ -1.28
PTPRU-202ENST00000373779 SPRR2GQ9BYE4 73 aa7.05□□□□□ -1.28
PTPRU-202ENST00000373779 LRP1Q07954 4544 aaKnown RBP7□□□□□ -1.29
PTPRU-202ENST00000373779 KRTAP17-1Q9BYP8 105 aa7□□□□□ -1.29
PTPRU-202ENST00000373779 MT1HP80294 61 aa6.99□□□□□ -1.29
PTPRU-202ENST00000373779 HYDINQ4G0P3 5121 aa6.98□□□□□ -1.29
PTPRU-202ENST00000373779 MT2AP02795 61 aa6.94□□□□□ -1.3
PTPRU-202ENST00000373779 RYR3Q15413 4870 aa6.88□□□□□ -1.31
PTPRU-202ENST00000373779 KIAA1109Q2LD37 5005 aa6.86□□□□□ -1.31
PTPRU-202ENST00000373779 RYR2Q92736 4967 aa6.86□□□□□ -1.31
PTPRU-202ENST00000373779 MT1FP04733 61 aa6.85□□□□□ -1.31
PTPRU-202ENST00000373779 PKD1P98161 4303 aa6.85□□□□□ -1.31
PTPRU-202ENST00000373779 PKHD1P08F94 4074 aa6.84□□□□□ -1.31
PTPRU-202ENST00000373779 CRCT1Q9UGL9 99 aa6.82□□□□□ -1.32
PTPRU-202ENST00000373779 PKHD1L1Q86WI1 4243 aa6.76□□□□□ -1.33
PTPRU-202ENST00000373779 KRTAP8-1Q8IUC2 63 aa6.75□□□□□ -1.33
PTPRU-202ENST00000373779 HSPG2P98160 4391 aa6.73□□□□□ -1.33
PTPRU-202ENST00000373779 KRTAP19-1Q8IUB9 90 aa6.7□□□□□ -1.34
PTPRU-202ENST00000373779 LRP2P98164 4655 aa6.68□□□□□ -1.34
PTPRU-202ENST00000373779 KRTAP19-5Q3LI72 72 aa6.61□□□□□ -1.35
PTPRU-202ENST00000373779 TNXBP22105 4242 aa6.61□□□□□ -1.35
PTPRU-202ENST00000373779 KRTAP19-8Q3LI54 63 aa6.59□□□□□ -1.36
PTPRU-202ENST00000373779 LCE3CQ5T5A8 94 aa6.56□□□□□ -1.36
PTPRU-202ENST00000373779 SPRR5A0A1B0GTR4 108 aa6.55□□□□□ -1.36
PTPRU-202ENST00000373779 KMT2CQ8NEZ4 4911 aaKnown RBP6.52□□□□□ -1.37
PTPRU-202ENST00000373779 LPAP08519 4548 aa6.51□□□□□ -1.37
PTPRU-202ENST00000373779 KRTAP10-7P60409 375 aaPredicted RBP6.5□□□□□ -1.37
PTPRU-202ENST00000373779 KRTAP10-5P60370 271 aa6.49□□□□□ -1.37
PTPRU-202ENST00000373779 MT1XP80297 61 aa6.47□□□□□ -1.37
PTPRU-202ENST00000373779 LCE2CQ5TA81 110 aa6.42□□□□□ -1.38
PTPRU-202ENST00000373779 MT1BP07438 61 aa6.41□□□□□ -1.38
PTPRU-202ENST00000373779 HERC2O95714 4834 aa6.39□□□□□ -1.39
PTPRU-202ENST00000373779 KRTAP19-2Q3LHN2 52 aa6.39□□□□□ -1.39
PTPRU-202ENST00000373779 KRTAP9-8Q9BYQ0 159 aa6.39□□□□□ -1.39
PTPRU-202ENST00000373779 KRTAP19-4Q3LI73 84 aa6.31□□□□□ -1.4
PTPRU-202ENST00000373779 HERC1Q15751 4861 aa6.24□□□□□ -1.41
PTPRU-202ENST00000373779 MUC17Q685J3 4493 aa6.21□□□□□ -1.41
PTPRU-202ENST00000373779 FLGP20930 4061 aaPredicted RBP6.2□□□□□ -1.42
PTPRU-202ENST00000373779 KRTAP9-3Q9BYQ3 159 aa6.19□□□□□ -1.42
PTPRU-202ENST00000373779 BIRC6Q9NR09 4857 aa6.15□□□□□ -1.43
PTPRU-202ENST00000373779 KRTAP4-8A0A0G2JLE6 195 aa6.08□□□□□ -1.44
PTPRU-202ENST00000373779 KRTAP4-8Q9BYQ9 185 aa6.08□□□□□ -1.44
PTPRU-202ENST00000373779 SPRR2FQ96RM1 72 aa6.07□□□□□ -1.44
PTPRU-202ENST00000373779 PCLOQ9Y6V0 5065 aa6□□□□□ -1.45
PTPRU-202ENST00000373779 EPPK1P58107 5090 aaKnown RBP5.99□□□□□ -1.45
PTPRU-202ENST00000373779 ABCA13Q86UQ4 5058 aa5.97□□□□□ -1.45
PTPRU-202ENST00000373779 MT1GP13640 62 aa5.91□□□□□ -1.46
PTPRU-202ENST00000373779 LCE2BO14633 110 aa5.88□□□□□ -1.47
PTPRU-202ENST00000373779 KRTAP12-4P60329 112 aa5.83□□□□□ -1.48
PTPRU-202ENST00000373779 KRTAP4-7Q9BYR0 210 aa5.82□□□□□ -1.48
PTPRU-202ENST00000373779 LCE3BQ5TA77 95 aa5.82□□□□□ -1.48
PTPRU-202ENST00000373779 MT1LQ93083 61 aa5.79□□□□□ -1.48
PTPRU-202ENST00000373779 MT1EP04732 61 aa5.74□□□□□ -1.49
PTPRU-202ENST00000373779 HMCN2Q8NDA2 5059 aa5.72□□□□□ -1.49
PTPRU-202ENST00000373779 FAT4Q6V0I7 4981 aa5.67□□□□□ -1.5
PTPRU-202ENST00000373779 KRTAP19-3Q7Z4W3 81 aa5.63□□□□□ -1.51
PTPRU-202ENST00000373779 RNF213Q63HN8 5207 aa5.63□□□□□ -1.51
PTPRU-202ENST00000373779 SPRR2EP22531 72 aa5.58□□□□□ -1.52
PTPRU-202ENST00000373779 SPRR2BP35325 72 aa5.58□□□□□ -1.52
PTPRU-202ENST00000373779 SPRR2AP35326 72 aa5.58□□□□□ -1.52
PTPRU-202ENST00000373779 LCE3DQ9BYE3 92 aa5.53□□□□□ -1.52
PTPRU-202ENST00000373779 KRTAP19-7Q3SYF9 63 aa5.52□□□□□ -1.53
PTPRU-202ENST00000373779 MUC2Q02817 5179 aa5.5□□□□□ -1.53
PTPRU-202ENST00000373779 UBR4Q5T4S7 5183 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms