RNA–Protein interactions for RNA: ENST00000373779.7

PTPRU-202, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-202ENST00000373779 NISCHQ9Y2I1 1504 aa30.84■■■□□ 2.53
PTPRU-202ENST00000373779 DCAF8L2P0C7V8 631 aa29.61■■■□□ 2.33
PTPRU-202ENST00000373779 SUPT5HO00267 1087 aaKnown RBP29.14■■■□□ 2.25
PTPRU-202ENST00000373779 SHROOM4Q9ULL8 1493 aa28.88■■■□□ 2.21
PTPRU-202ENST00000373779 PCGF6Q9BYE7 350 aa27.69■■■□□ 2.02
PTPRU-202ENST00000373779 EHMT2Q96KQ7 1210 aa27.64■■■□□ 2.01
PTPRU-202ENST00000373779 FAM9AQ8IZU1 332 aaPredicted RBP27.28■■□□□ 1.96
PTPRU-202ENST00000373779 ZEB1P37275 1124 aaPredicted RBP27.1■■□□□ 1.93
PTPRU-202ENST00000373779 TRIM41Q8WV44 630 aa27.03■■□□□ 1.92
PTPRU-202ENST00000373779 HRCP23327 699 aa26.95■■□□□ 1.9
PTPRU-202ENST00000373779 APLP2Q06481 763 aa26.86■■□□□ 1.89
PTPRU-202ENST00000373779 CHIC1Q5VXU3 224 aa26.82■■□□□ 1.88
PTPRU-202ENST00000373779 TTBK1Q5TCY1 1321 aaPredicted RBP26.81■■□□□ 1.88
PTPRU-202ENST00000373779 PELP1Q8IZL8 1130 aaKnown RBP26.8■■□□□ 1.88
PTPRU-202ENST00000373779 TRIM26Q12899 539 aaPredicted RBP26.71■■□□□ 1.87
PTPRU-202ENST00000373779 CCER1Q8TC90 406 aaPredicted RBP26.71■■□□□ 1.87
PTPRU-202ENST00000373779 CENPBP07199 599 aaPredicted RBP26.65■■□□□ 1.86
PTPRU-202ENST00000373779 LOC105371045A0A1W2PR82 267 aa26.53■■□□□ 1.84
PTPRU-202ENST00000373779 PPARGC1BQ86YN6 1023 aaKnown RBP26.34■■□□□ 1.81
PTPRU-202ENST00000373779 UBTFP17480 764 aaKnown RBP26.33■■□□□ 1.81
PTPRU-202ENST00000373779 RANGAP1P46060 587 aaPredicted RBP26.26■■□□□ 1.79
PTPRU-202ENST00000373779 YTHDC1Q96MU7 727 aaKnown RBP26.07■■□□□ 1.76
PTPRU-202ENST00000373779 MYT1Q01538 1121 aa25.89■■□□□ 1.73
PTPRU-202ENST00000373779 ZCCHC6Q5VYS8 1495 aaKnown RBP25.79■■□□□ 1.72
PTPRU-202ENST00000373779 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.77■■□□□ 1.72
PTPRU-202ENST00000373779 ATP1B4Q9UN42 357 aaPredicted RBP25.75■■□□□ 1.71
PTPRU-202ENST00000373779 DIEXFQ68CQ4 756 aaKnown RBP25.64■■□□□ 1.69
PTPRU-202ENST00000373779 HNRNPUL2Q1KMD3 747 aaKnown RBP25.63■■□□□ 1.69
PTPRU-202ENST00000373779 NEFLP07196 543 aa25.61■■□□□ 1.69
PTPRU-202ENST00000373779 ERICH6Q7L0X2 663 aa25.61■■□□□ 1.69
PTPRU-202ENST00000373779 DCAF1Q9Y4B6 1507 aa25.57■■□□□ 1.68
PTPRU-202ENST00000373779 ITGAEP38570 1179 aa25.4■■□□□ 1.66
PTPRU-202ENST00000373779 CCDC180Q9P1Z9 1646 aa25.4■■□□□ 1.66
PTPRU-202ENST00000373779 ABCC9O60706 1549 aa25.36■■□□□ 1.65
PTPRU-202ENST00000373779 MYO15BQ96JP2 1530 aa25.35■■□□□ 1.65
PTPRU-202ENST00000373779 GTF3C3Q9Y5Q9 886 aa25.26■■□□□ 1.63
PTPRU-202ENST00000373779 SCRIBQ14160 1630 aa25.16■■□□□ 1.62
PTPRU-202ENST00000373779 ACIN1Q9UKV3 1341 aaKnown RBP25.15■■□□□ 1.62
PTPRU-202ENST00000373779 ZNF316A6NFI3 1004 aaPredicted RBP25.14■■□□□ 1.61
PTPRU-202ENST00000373779 PABPN1Q86U42 306 aaKnown RBP eCLIP25.02■■□□□ 1.6
PTPRU-202ENST00000373779 CSRNP3Q8WYN3 585 aa25.01■■□□□ 1.59
PTPRU-202ENST00000373779 FAM50AQ14320 339 aaKnown RBP24.87■■□□□ 1.57
PTPRU-202ENST00000373779 NEUROD1Q13562 356 aa24.77■■□□□ 1.56
PTPRU-202ENST00000373779 RSF1Q96T23 1441 aaPredicted RBP24.77■■□□□ 1.56
PTPRU-202ENST00000373779 POLR3GLQ9BT43 218 aa24.76■■□□□ 1.55
PTPRU-202ENST00000373779 SCAF1Q9H7N4 1312 aaKnown RBP24.73■■□□□ 1.55
PTPRU-202ENST00000373779 BCANQ96GW7 911 aa24.67■■□□□ 1.54
PTPRU-202ENST00000373779 ANP32CO43423 234 aa24.62■■□□□ 1.53
PTPRU-202ENST00000373779 CNGB1Q14028 1251 aaPredicted RBP24.6■■□□□ 1.53
PTPRU-202ENST00000373779 TRIM52Q96A61 297 aa24.52■■□□□ 1.52
PTPRU-202ENST00000373779 CLSPNQ9HAW4 1339 aa24.5■■□□□ 1.51
PTPRU-202ENST00000373779 DAXXQ9UER7 740 aaPredicted RBP24.45■■□□□ 1.5
PTPRU-202ENST00000373779 RB1CC1Q8TDY2 1594 aa24.45■■□□□ 1.5
PTPRU-202ENST00000373779 CEP162Q5TB80 1403 aa24.43■■□□□ 1.5
PTPRU-202ENST00000373779 EEA1Q15075 1411 aa24.37■■□□□ 1.49
PTPRU-202ENST00000373779 MIER1Q8N108 512 aa24.36■■□□□ 1.49
PTPRU-202ENST00000373779 CDK11AQ9UQ88 783 aaPredicted RBP24.36■■□□□ 1.49
PTPRU-202ENST00000373779 P3H3Q8IVL6 736 aa24.35■■□□□ 1.49
PTPRU-202ENST00000373779 CLIP1P30622 1438 aa24.35■■□□□ 1.49
PTPRU-202ENST00000373779 GOLGA3Q08378 1498 aa24.32■■□□□ 1.48
PTPRU-202ENST00000373779 RTL5Q5HYW3 569 aaPredicted RBP24.3■■□□□ 1.48
PTPRU-202ENST00000373779 NACADO15069 1562 aa24.27■■□□□ 1.48
PTPRU-202ENST00000373779 TNIKQ9UKE5 1360 aa24.26■■□□□ 1.47
PTPRU-202ENST00000373779 FKBP8Q14318 412 aa24.22■■□□□ 1.47
PTPRU-202ENST00000373779 DDX10Q13206 875 aaKnown RBP24.18■■□□□ 1.46
PTPRU-202ENST00000373779 MYT1LQ9UL68 1186 aa24.17■■□□□ 1.46
PTPRU-202ENST00000373779 ZNF326Q5BKZ1 582 aaKnown RBP24.16■■□□□ 1.46
PTPRU-202ENST00000373779 TONSLQ96HA7 1378 aa24.16■■□□□ 1.46
PTPRU-202ENST00000373779 CECR2Q9BXF3 1484 aa24.14■■□□□ 1.46
PTPRU-202ENST00000373779 WRNQ14191 1432 aaPredicted RBP eCLIP24.13■■□□□ 1.45
PTPRU-202ENST00000373779 BAZ1AQ9NRL2 1556 aaPredicted RBP24.08■■□□□ 1.45
PTPRU-202ENST00000373779 CEP164Q9UPV0 1460 aa24.07■■□□□ 1.44
PTPRU-202ENST00000373779 HNRNPUQ00839 825 aaKnown RBP eCLIP24■■□□□ 1.43
PTPRU-202ENST00000373779 ARID3CA6NKF2 412 aa23.97■■□□□ 1.43
PTPRU-202ENST00000373779 MROH2BQ7Z745 1585 aa23.95■■□□□ 1.42
PTPRU-202ENST00000373779 SOGA1O94964 1423 aa23.94■■□□□ 1.42
PTPRU-202ENST00000373779 SLC4A1APQ9BWU0 796 aaKnown RBP23.9■■□□□ 1.42
PTPRU-202ENST00000373779 ANP32AP39687 249 aaKnown RBP23.87■■□□□ 1.41
PTPRU-202ENST00000373779 BAZ1BQ9UIG0 1483 aaKnown RBP23.85■■□□□ 1.41
PTPRU-202ENST00000373779 FAM9BQ8IZU0 186 aa23.83■■□□□ 1.41
PTPRU-202ENST00000373779 HIRIP3Q9BW71 556 aaPredicted RBP23.82■■□□□ 1.4
PTPRU-202ENST00000373779 ABCC8Q09428 1581 aa23.82■■□□□ 1.4
PTPRU-202ENST00000373779 MTUS2Q5JR59 1369 aa23.8■■□□□ 1.4
PTPRU-202ENST00000373779 ZNF777Q9ULD5 760 aaPredicted RBP23.79■■□□□ 1.4
PTPRU-202ENST00000373779 FBLN2P98095 1184 aa23.79■■□□□ 1.4
PTPRU-202ENST00000373779 CCDC88BA6NC98 1476 aa23.78■■□□□ 1.4
PTPRU-202ENST00000373779 CHIC2Q9UKJ5 165 aa23.78■■□□□ 1.4
PTPRU-202ENST00000373779 KIF27Q86VH2 1401 aa23.77■■□□□ 1.4
PTPRU-202ENST00000373779 VPS8Q8N3P4 1428 aa23.71■■□□□ 1.39
PTPRU-202ENST00000373779 WIZO95785 1651 aa23.71■■□□□ 1.39
PTPRU-202ENST00000373779 MRS2Q9HD23 443 aa23.68■■□□□ 1.38
PTPRU-202ENST00000373779 NPM2Q86SE8 214 aaKnown RBP23.67■■□□□ 1.38
PTPRU-202ENST00000373779 SUPT16HQ9Y5B9 1047 aaKnown RBP23.67■■□□□ 1.38
PTPRU-202ENST00000373779 IRX6P78412 446 aaPredicted RBP23.65■■□□□ 1.38
PTPRU-202ENST00000373779 CCNB3Q8WWL7 1395 aa23.64■■□□□ 1.37
PTPRU-202ENST00000373779 EIF4G2P78344 907 aaKnown RBP eCLIP23.63■■□□□ 1.37
PTPRU-202ENST00000373779 TOP2AP11388 1531 aaKnown RBP23.6■■□□□ 1.37
PTPRU-202ENST00000373779 CCDC136Q96JN2 1154 aa23.59■■□□□ 1.37
PTPRU-202ENST00000373779 CANXP27824 592 aaKnown RBP23.58■■□□□ 1.37
PTPRU-202ENST00000373779 SIN3AQ96ST3 1273 aa23.57■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms