RNA–Protein interactions for RNA: ENST00000355497.9

LMX1B-201, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

TSL 1 (best) BASIC

Gene LMX1B, Length 5,809 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-201ENST00000355497 FBN3Q75N90 2809 aa6□□□□□ -1.45
LMX1B-201ENST00000355497 VPS13CQ709C8 3753 aa5.91□□□□□ -1.46
LMX1B-201ENST00000355497 ZNF469Q96JG9 3925 aaPredicted RBP5.91□□□□□ -1.46
LMX1B-201ENST00000355497 CUBNO60494 3623 aa5.9□□□□□ -1.47
LMX1B-201ENST00000355497 DNAH9Q9NYC9 4486 aa5.88□□□□□ -1.47
LMX1B-201ENST00000355497 ANK2Q01484 3957 aa5.83□□□□□ -1.48
LMX1B-201ENST00000355497 COL7A1Q02388 2944 aa5.78□□□□□ -1.48
LMX1B-201ENST00000355497 MT1HP80294 61 aa5.78□□□□□ -1.48
LMX1B-201ENST00000355497 KRTAP10-7P60409 375 aaPredicted RBP5.76□□□□□ -1.49
LMX1B-201ENST00000355497 KRTAP4-1Q9BYQ7 146 aa5.72□□□□□ -1.49
LMX1B-201ENST00000355497 KRTAP19-5Q3LI72 72 aa5.71□□□□□ -1.49
LMX1B-201ENST00000355497 SPRR2GQ9BYE4 73 aa5.71□□□□□ -1.5
LMX1B-201ENST00000355497 MT2AP02795 61 aa5.71□□□□□ -1.5
LMX1B-201ENST00000355497 DNAH1Q9P2D7 4330 aa5.69□□□□□ -1.5
LMX1B-201ENST00000355497 LCE3CQ5T5A8 94 aa5.69□□□□□ -1.5
LMX1B-201ENST00000355497 SPRR2FQ96RM1 72 aa5.67□□□□□ -1.5
LMX1B-201ENST00000355497 DNAH2Q9P225 4427 aa5.67□□□□□ -1.5
LMX1B-201ENST00000355497 VPS13DQ5THJ4 4388 aa5.65□□□□□ -1.5
LMX1B-201ENST00000355497 PLECQ15149 4684 aaKnown RBP5.65□□□□□ -1.5
LMX1B-201ENST00000355497 DNAH17Q9UFH2 4485 aa5.64□□□□□ -1.51
LMX1B-201ENST00000355497 DNAH3Q8TD57 4116 aa5.61□□□□□ -1.51
LMX1B-201ENST00000355497 DNAH5Q8TE73 4624 aa5.61□□□□□ -1.51
LMX1B-201ENST00000355497 DNAH10Q8IVF4 4471 aa5.6□□□□□ -1.51
LMX1B-201ENST00000355497 CMYA5Q8N3K9 4069 aa5.59□□□□□ -1.51
LMX1B-201ENST00000355497 MT1FP04733 61 aa5.56□□□□□ -1.52
LMX1B-201ENST00000355497 KRTAP19-4Q3LI73 84 aa5.54□□□□□ -1.52
LMX1B-201ENST00000355497 DNAH11Q96DT5 4516 aa5.54□□□□□ -1.52
LMX1B-201ENST00000355497 DNHD1Q96M86 4753 aa5.51□□□□□ -1.53
LMX1B-201ENST00000355497 PRKDCP78527 4128 aaKnown RBP5.46□□□□□ -1.54
LMX1B-201ENST00000355497 DNAH6Q9C0G6 4158 aa5.46□□□□□ -1.54
LMX1B-201ENST00000355497 STARD9Q9P2P6 4700 aa5.45□□□□□ -1.54
LMX1B-201ENST00000355497 DYNC2H1Q8NCM8 4307 aaKnown RBP5.43□□□□□ -1.54
LMX1B-201ENST00000355497 DYNC1H1Q14204 4646 aaKnown RBP5.43□□□□□ -1.54
LMX1B-201ENST00000355497 CSMD3Q7Z407 3707 aa5.4□□□□□ -1.54
LMX1B-201ENST00000355497 LCE3BQ5TA77 95 aa5.38□□□□□ -1.55
LMX1B-201ENST00000355497 LRP1BQ9NZR2 4599 aa5.37□□□□□ -1.55
LMX1B-201ENST00000355497 SACSQ9NZJ4 4579 aa5.35□□□□□ -1.55
LMX1B-201ENST00000355497 SPRR2EP22531 72 aa5.35□□□□□ -1.55
LMX1B-201ENST00000355497 SPRR2BP35325 72 aa5.35□□□□□ -1.55
LMX1B-201ENST00000355497 SPRR2AP35326 72 aa5.35□□□□□ -1.55
LMX1B-201ENST00000355497 FAT2Q9NYQ8 4349 aa5.35□□□□□ -1.55
LMX1B-201ENST00000355497 DNAH8Q96JB1 4490 aa5.32□□□□□ -1.56
LMX1B-201ENST00000355497 DNAH7Q8WXX0 4024 aa5.31□□□□□ -1.56
LMX1B-201ENST00000355497 KRTAP12-4P60329 112 aa5.27□□□□□ -1.57
LMX1B-201ENST00000355497 FAT1Q14517 4588 aa5.24□□□□□ -1.57
LMX1B-201ENST00000355497 KRTAP19-8Q3LI54 63 aa5.22□□□□□ -1.57
LMX1B-201ENST00000355497 MT1GP13640 62 aa5.22□□□□□ -1.57
LMX1B-201ENST00000355497 SPRR2DP22532 72 aa5.19□□□□□ -1.58
LMX1B-201ENST00000355497 KMT2AQ03164 3969 aa5.18□□□□□ -1.58
LMX1B-201ENST00000355497 RYR2Q92736 4967 aa5.16□□□□□ -1.58
LMX1B-201ENST00000355497 LCE2BO14633 110 aa5.14□□□□□ -1.59
LMX1B-201ENST00000355497 MT1XP80297 61 aa5.14□□□□□ -1.59
LMX1B-201ENST00000355497 KRTAP19-1Q8IUB9 90 aa5.14□□□□□ -1.59
LMX1B-201ENST00000355497 VPS13BQ7Z7G8 4022 aa5.12□□□□□ -1.59
LMX1B-201ENST00000355497 RYR1P21817 5038 aa5.09□□□□□ -1.59
LMX1B-201ENST00000355497 LCE3DQ9BYE3 92 aa5.08□□□□□ -1.6
LMX1B-201ENST00000355497 APOBP04114 4563 aaKnown RBP5.07□□□□□ -1.6
LMX1B-201ENST00000355497 HECTD4Q9Y4D8 3996 aa5.06□□□□□ -1.6
LMX1B-201ENST00000355497 BIRC6Q9NR09 4857 aa5.04□□□□□ -1.6
LMX1B-201ENST00000355497 KRTAP17-1Q9BYP8 105 aa5.02□□□□□ -1.61
LMX1B-201ENST00000355497 LCE3EQ5T5B0 92 aa5.01□□□□□ -1.61
LMX1B-201ENST00000355497 MT1BP07438 61 aa5□□□□□ -1.61
LMX1B-201ENST00000355497 LRP1Q07954 4544 aaKnown RBP5□□□□□ -1.61
LMX1B-201ENST00000355497 SPRR5A0A1B0GTR4 108 aa4.99□□□□□ -1.61
LMX1B-201ENST00000355497 RYR3Q15413 4870 aa4.98□□□□□ -1.61
LMX1B-201ENST00000355497 FRAS1Q86XX4 4008 aa4.95□□□□□ -1.62
LMX1B-201ENST00000355497 KRTAP4-8A0A0G2JLE6 195 aa4.95□□□□□ -1.62
LMX1B-201ENST00000355497 KRTAP4-8Q9BYQ9 185 aa4.95□□□□□ -1.62
LMX1B-201ENST00000355497 HYDINQ4G0P3 5121 aa4.93□□□□□ -1.62
LMX1B-201ENST00000355497 LYSTQ99698 3801 aa4.93□□□□□ -1.62
LMX1B-201ENST00000355497 FAT3Q8TDW7 4589 aa4.93□□□□□ -1.62
LMX1B-201ENST00000355497 HERC1Q15751 4861 aa4.89□□□□□ -1.63
LMX1B-201ENST00000355497 PKD1P98161 4303 aa4.88□□□□□ -1.63
LMX1B-201ENST00000355497 KRTAP9-8Q9BYQ0 159 aa4.88□□□□□ -1.63
LMX1B-201ENST00000355497 KIAA1109Q2LD37 5005 aa4.87□□□□□ -1.63
LMX1B-201ENST00000355497 HSPG2P98160 4391 aa4.86□□□□□ -1.63
LMX1B-201ENST00000355497 KMT2CQ8NEZ4 4911 aaKnown RBP4.83□□□□□ -1.64
LMX1B-201ENST00000355497 MYCBP2O75592 4640 aa4.81□□□□□ -1.64
LMX1B-201ENST00000355497 KRTAP9-3Q9BYQ3 159 aa4.81□□□□□ -1.64
LMX1B-201ENST00000355497 LCE2CQ5TA81 110 aa4.8□□□□□ -1.64
LMX1B-201ENST00000355497 KRTAP19-3Q7Z4W3 81 aa4.8□□□□□ -1.64
LMX1B-201ENST00000355497 PKHD1L1Q86WI1 4243 aa4.79□□□□□ -1.64
LMX1B-201ENST00000355497 HERC2O95714 4834 aa4.75□□□□□ -1.65
LMX1B-201ENST00000355497 MT1LQ93083 61 aa4.75□□□□□ -1.65
LMX1B-201ENST00000355497 LCE2DQ5TA82 110 aaPredicted RBP4.74□□□□□ -1.65
LMX1B-201ENST00000355497 PKHD1P08F94 4074 aa4.73□□□□□ -1.65
LMX1B-201ENST00000355497 PRM1P04553 51 aa4.72□□□□□ -1.65
LMX1B-201ENST00000355497 KRTAP4-7Q9BYR0 210 aa4.71□□□□□ -1.65
LMX1B-201ENST00000355497 EPPK1P58107 5090 aaKnown RBP4.67□□□□□ -1.66
LMX1B-201ENST00000355497 MT1EP04732 61 aa4.66□□□□□ -1.66
LMX1B-201ENST00000355497 MT3P25713 68 aa4.65□□□□□ -1.66
LMX1B-201ENST00000355497 TNXBP22105 4242 aa4.6□□□□□ -1.67
LMX1B-201ENST00000355497 MT4P47944 62 aa4.57□□□□□ -1.68
LMX1B-201ENST00000355497 LCE1BQ5T7P3 118 aa4.56□□□□□ -1.68
LMX1B-201ENST00000355497 MT1MQ8N339 61 aa4.55□□□□□ -1.68
LMX1B-201ENST00000355497 LRP2P98164 4655 aa4.53□□□□□ -1.68
LMX1B-201ENST00000355497 KRTAP19-2Q3LHN2 52 aa4.53□□□□□ -1.68
LMX1B-201ENST00000355497 PCLOQ9Y6V0 5065 aa4.5□□□□□ -1.69
LMX1B-201ENST00000355497 LCE1DQ5T752 114 aa4.49□□□□□ -1.69
LMX1B-201ENST00000355497 ABCA13Q86UQ4 5058 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms