RNA–Protein interactions for RNA: ENST00000355497.9

LMX1B-201, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

TSL 1 (best) BASIC

Gene LMX1B, Length 5,809 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-201ENST00000355497 DCAF8L2P0C7V8 631 aa25.15■■□□□ 1.62
LMX1B-201ENST00000355497 PELP1Q8IZL8 1130 aaKnown RBP24.06■■□□□ 1.44
LMX1B-201ENST00000355497 SUPT5HO00267 1087 aaKnown RBP23.95■■□□□ 1.42
LMX1B-201ENST00000355497 EHMT2Q96KQ7 1210 aa23.49■■□□□ 1.35
LMX1B-201ENST00000355497 APLP2Q06481 763 aa23.29■■□□□ 1.32
LMX1B-201ENST00000355497 SHROOM4Q9ULL8 1493 aa23.27■■□□□ 1.32
LMX1B-201ENST00000355497 ERICH6Q7L0X2 663 aa23.18■■□□□ 1.3
LMX1B-201ENST00000355497 CCER1Q8TC90 406 aaPredicted RBP22.97■■□□□ 1.27
LMX1B-201ENST00000355497 FAM9AQ8IZU1 332 aaPredicted RBP22.9■■□□□ 1.26
LMX1B-201ENST00000355497 CENPBP07199 599 aaPredicted RBP22.85■■□□□ 1.25
LMX1B-201ENST00000355497 TTBK1Q5TCY1 1321 aaPredicted RBP22.78■■□□□ 1.24
LMX1B-201ENST00000355497 NISCHQ9Y2I1 1504 aa22.73■■□□□ 1.23
LMX1B-201ENST00000355497 PCGF6Q9BYE7 350 aa22.69■■□□□ 1.22
LMX1B-201ENST00000355497 ZEB1P37275 1124 aaPredicted RBP22.59■■□□□ 1.21
LMX1B-201ENST00000355497 MYT1Q01538 1121 aa22.49■■□□□ 1.19
LMX1B-201ENST00000355497 NEFLP07196 543 aa22.46■■□□□ 1.19
LMX1B-201ENST00000355497 RANGAP1P46060 587 aaPredicted RBP22.41■■□□□ 1.18
LMX1B-201ENST00000355497 ATP1B4Q9UN42 357 aaPredicted RBP22.32■■□□□ 1.16
LMX1B-201ENST00000355497 YTHDC1Q96MU7 727 aaKnown RBP22.25■■□□□ 1.15
LMX1B-201ENST00000355497 TRIM41Q8WV44 630 aa22.16■■□□□ 1.14
LMX1B-201ENST00000355497 UBTFP17480 764 aaKnown RBP22.05■■□□□ 1.12
LMX1B-201ENST00000355497 DAXXQ9UER7 740 aaPredicted RBP22.01■■□□□ 1.11
LMX1B-201ENST00000355497 PPARGC1BQ86YN6 1023 aaKnown RBP21.68■■□□□ 1.06
LMX1B-201ENST00000355497 POLR3GLQ9BT43 218 aa21.67■■□□□ 1.06
LMX1B-201ENST00000355497 TRIM26Q12899 539 aaPredicted RBP21.62■■□□□ 1.05
LMX1B-201ENST00000355497 MYT1LQ9UL68 1186 aa21.56■■□□□ 1.04
LMX1B-201ENST00000355497 ITGAEP38570 1179 aa21.5■■□□□ 1.03
LMX1B-201ENST00000355497 HRCP23327 699 aa21.49■■□□□ 1.03
LMX1B-201ENST00000355497 RTL5Q5HYW3 569 aaPredicted RBP21.48■■□□□ 1.03
LMX1B-201ENST00000355497 ZNF316A6NFI3 1004 aaPredicted RBP21.47■■□□□ 1.03
LMX1B-201ENST00000355497 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.43■■□□□ 1.02
LMX1B-201ENST00000355497 HNRNPUL2Q1KMD3 747 aaKnown RBP21.43■■□□□ 1.02
LMX1B-201ENST00000355497 CNGB1Q14028 1251 aaPredicted RBP21.4■■□□□ 1.02
LMX1B-201ENST00000355497 CLSPNQ9HAW4 1339 aa21.36■■□□□ 1.01
LMX1B-201ENST00000355497 SLC4A1APQ9BWU0 796 aaKnown RBP21.3■■□□□ 1
LMX1B-201ENST00000355497 CHIC1Q5VXU3 224 aa21.18■□□□□ 0.98
LMX1B-201ENST00000355497 DIEXFQ68CQ4 756 aaKnown RBP21.09■□□□□ 0.97
LMX1B-201ENST00000355497 LOC105371045A0A1W2PR82 267 aa21.02■□□□□ 0.95
LMX1B-201ENST00000355497 ZBTB47Q9UFB7 747 aaPredicted RBP20.94■□□□□ 0.94
LMX1B-201ENST00000355497 BCANQ96GW7 911 aa20.91■□□□□ 0.94
LMX1B-201ENST00000355497 CDK11AQ9UQ88 783 aaPredicted RBP20.89■□□□□ 0.94
LMX1B-201ENST00000355497 FAM50AQ14320 339 aaKnown RBP20.89■□□□□ 0.93
LMX1B-201ENST00000355497 TRIM52Q96A61 297 aa20.88■□□□□ 0.93
LMX1B-201ENST00000355497 NEUROD1Q13562 356 aa20.8■□□□□ 0.92
LMX1B-201ENST00000355497 ANP32CO43423 234 aa20.8■□□□□ 0.92
LMX1B-201ENST00000355497 GTF3C3Q9Y5Q9 886 aa20.77■□□□□ 0.91
LMX1B-201ENST00000355497 CANXP27824 592 aaKnown RBP20.74■□□□□ 0.91
LMX1B-201ENST00000355497 ZNF326Q5BKZ1 582 aaKnown RBP20.69■□□□□ 0.9
LMX1B-201ENST00000355497 BCL11AQ9H165 835 aa20.64■□□□□ 0.89
LMX1B-201ENST00000355497 SLC24A1O60721 1099 aa20.64■□□□□ 0.89
LMX1B-201ENST00000355497 ANP32AP39687 249 aaKnown RBP20.61■□□□□ 0.89
LMX1B-201ENST00000355497 NEFMP07197 916 aa20.58■□□□□ 0.89
LMX1B-201ENST00000355497 ANP32BQ92688 251 aaKnown RBP20.48■□□□□ 0.87
LMX1B-201ENST00000355497 EIF5BO60841 1220 aaKnown RBP20.47■□□□□ 0.87
LMX1B-201ENST00000355497 NPM2Q86SE8 214 aaKnown RBP20.47■□□□□ 0.87
LMX1B-201ENST00000355497 GLIPR1L2Q4G1C9 344 aa20.37■□□□□ 0.85
LMX1B-201ENST00000355497 ACIN1Q9UKV3 1341 aaKnown RBP20.36■□□□□ 0.85
LMX1B-201ENST00000355497 HSP90AA1P07900 732 aaKnown RBP20.34■□□□□ 0.85
LMX1B-201ENST00000355497 UPF2Q9HAU5 1272 aaKnown RBP20.27■□□□□ 0.84
LMX1B-201ENST00000355497 FBLN2P98095 1184 aa20.23■□□□□ 0.83
LMX1B-201ENST00000355497 FKBP8Q14318 412 aa20.2■□□□□ 0.82
LMX1B-201ENST00000355497 ZNF777Q9ULD5 760 aaPredicted RBP20.1■□□□□ 0.81
LMX1B-201ENST00000355497 ARID3CA6NKF2 412 aa20.1■□□□□ 0.81
LMX1B-201ENST00000355497 P3H3Q8IVL6 736 aa20.07■□□□□ 0.8
LMX1B-201ENST00000355497 HNRNPUQ00839 825 aaKnown RBP eCLIP20.06■□□□□ 0.8
LMX1B-201ENST00000355497 PABPN1Q86U42 306 aaKnown RBP eCLIP20.05■□□□□ 0.8
LMX1B-201ENST00000355497 TONSLQ96HA7 1378 aa20.03■□□□□ 0.8
LMX1B-201ENST00000355497 FAM9BQ8IZU0 186 aa20.02■□□□□ 0.8
LMX1B-201ENST00000355497 NBR1Q14596 966 aa20.02■□□□□ 0.79
LMX1B-201ENST00000355497 ESF1Q9H501 851 aaKnown RBP20.01■□□□□ 0.79
LMX1B-201ENST00000355497 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.01■□□□□ 0.79
LMX1B-201ENST00000355497 CCDC136Q96JN2 1154 aa19.98■□□□□ 0.79
LMX1B-201ENST00000355497 ARXQ96QS3 562 aa19.98■□□□□ 0.79
LMX1B-201ENST00000355497 STAG3Q9UJ98 1225 aa19.97■□□□□ 0.79
LMX1B-201ENST00000355497 CHGAP10645 457 aaKnown RBP19.97■□□□□ 0.79
LMX1B-201ENST00000355497 SALL2Q9Y467 1007 aaPredicted RBP19.94■□□□□ 0.78
LMX1B-201ENST00000355497 CDK11BP21127 795 aaKnown RBP19.94■□□□□ 0.78
LMX1B-201ENST00000355497 DDX10Q13206 875 aaKnown RBP19.9■□□□□ 0.78
LMX1B-201ENST00000355497 CSRNP3Q8WYN3 585 aa19.89■□□□□ 0.77
LMX1B-201ENST00000355497 TMC1Q8TDI8 760 aa19.88■□□□□ 0.77
LMX1B-201ENST00000355497 WDR43Q15061 677 aaKnown RBP eCLIP19.88■□□□□ 0.77
LMX1B-201ENST00000355497 MYH16Q9H6N6 1097 aa19.83■□□□□ 0.77
LMX1B-201ENST00000355497 ABCC9O60706 1549 aa19.8■□□□□ 0.76
LMX1B-201ENST00000355497 PLPPR3Q6T4P5 718 aa19.77■□□□□ 0.75
LMX1B-201ENST00000355497 NCLP19338 710 aaKnown RBP19.76■□□□□ 0.75
LMX1B-201ENST00000355497 MRS2Q9HD23 443 aa19.75■□□□□ 0.75
LMX1B-201ENST00000355497 DDRGK1Q96HY6 314 aa19.75■□□□□ 0.75
LMX1B-201ENST00000355497 TRIM44Q96DX7 344 aaPredicted RBP19.75■□□□□ 0.75
LMX1B-201ENST00000355497 BECN1Q14457 450 aa19.74■□□□□ 0.75
LMX1B-201ENST00000355497 ANP32EQ9BTT0 268 aa19.7■□□□□ 0.74
LMX1B-201ENST00000355497 TNNT2P45379 298 aaPredicted RBP19.7■□□□□ 0.74
LMX1B-201ENST00000355497 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.69■□□□□ 0.74
LMX1B-201ENST00000355497 GOLGA6L22H0YM25 854 aa19.68■□□□□ 0.74
LMX1B-201ENST00000355497 IRX6P78412 446 aaPredicted RBP19.68■□□□□ 0.74
LMX1B-201ENST00000355497 CHIC2Q9UKJ5 165 aa19.64■□□□□ 0.74
LMX1B-201ENST00000355497 NPM1P06748 294 aaKnown RBP eCLIP19.64■□□□□ 0.73
LMX1B-201ENST00000355497 SCAF1Q9H7N4 1312 aaKnown RBP19.63■□□□□ 0.73
LMX1B-201ENST00000355497 KDM2AQ9Y2K7 1162 aa19.63■□□□□ 0.73
LMX1B-201ENST00000355497 PTMAP06454 111 aaKnown RBP19.59■□□□□ 0.73
LMX1B-201ENST00000355497 ZRSR1Q15695 479 aaKnown RBP19.58■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 172.5 ms