RNA–Protein interactions for RNA: ENST00000344722.5

SMC4-201, Transcript of structural maintenance of chromosomes 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC4, Length 5,356 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-201ENST00000344722 DNAH1Q9P2D7 4330 aa7.41□□□□□ -1.22
SMC4-201ENST00000344722 DNAH11Q96DT5 4516 aa7.41□□□□□ -1.22
SMC4-201ENST00000344722 DNAH10Q8IVF4 4471 aa7.4□□□□□ -1.23
SMC4-201ENST00000344722 DNAH2Q9P225 4427 aa7.38□□□□□ -1.23
SMC4-201ENST00000344722 DNAH9Q9NYC9 4486 aa7.37□□□□□ -1.23
SMC4-201ENST00000344722 CSMD3Q7Z407 3707 aa7.36□□□□□ -1.23
SMC4-201ENST00000344722 CRCT1Q9UGL9 99 aa7.32□□□□□ -1.24
SMC4-201ENST00000344722 DNAH17Q9UFH2 4485 aa7.32□□□□□ -1.24
SMC4-201ENST00000344722 KRTAP4-5Q9BYR2 181 aa7.29□□□□□ -1.24
SMC4-201ENST00000344722 DNAH5Q8TE73 4624 aa7.28□□□□□ -1.24
SMC4-201ENST00000344722 PLECQ15149 4684 aaKnown RBP7.23□□□□□ -1.25
SMC4-201ENST00000344722 DNAH8Q96JB1 4490 aa7.19□□□□□ -1.26
SMC4-201ENST00000344722 VPS13DQ5THJ4 4388 aa7.18□□□□□ -1.26
SMC4-201ENST00000344722 DNAH3Q8TD57 4116 aa7.14□□□□□ -1.27
SMC4-201ENST00000344722 KRTAP4-1Q9BYQ7 146 aa7.13□□□□□ -1.27
SMC4-201ENST00000344722 KRTAP10-5P60370 271 aa7.11□□□□□ -1.27
SMC4-201ENST00000344722 SPRR2GQ9BYE4 73 aa7.1□□□□□ -1.27
SMC4-201ENST00000344722 ZNF469Q96JG9 3925 aaPredicted RBP7.08□□□□□ -1.28
SMC4-201ENST00000344722 SACSQ9NZJ4 4579 aa7.02□□□□□ -1.29
SMC4-201ENST00000344722 KRTAP8-1Q8IUC2 63 aa6.99□□□□□ -1.29
SMC4-201ENST00000344722 DYNC2H1Q8NCM8 4307 aaKnown RBP6.91□□□□□ -1.3
SMC4-201ENST00000344722 LCE3CQ5T5A8 94 aa6.9□□□□□ -1.3
SMC4-201ENST00000344722 FAT1Q14517 4588 aa6.89□□□□□ -1.31
SMC4-201ENST00000344722 DYNC1H1Q14204 4646 aaKnown RBP6.88□□□□□ -1.31
SMC4-201ENST00000344722 MT2AP02795 61 aa6.88□□□□□ -1.31
SMC4-201ENST00000344722 MT1HP80294 61 aa6.87□□□□□ -1.31
SMC4-201ENST00000344722 SPRR5A0A1B0GTR4 108 aa6.86□□□□□ -1.31
SMC4-201ENST00000344722 LRP1BQ9NZR2 4599 aa6.86□□□□□ -1.31
SMC4-201ENST00000344722 ANK2Q01484 3957 aa6.85□□□□□ -1.31
SMC4-201ENST00000344722 STARD9Q9P2P6 4700 aa6.82□□□□□ -1.32
SMC4-201ENST00000344722 KRTAP19-5Q3LI72 72 aa6.82□□□□□ -1.32
SMC4-201ENST00000344722 FAT2Q9NYQ8 4349 aa6.77□□□□□ -1.33
SMC4-201ENST00000344722 KRTAP19-4Q3LI73 84 aa6.76□□□□□ -1.33
SMC4-201ENST00000344722 MT1FP04733 61 aa6.74□□□□□ -1.33
SMC4-201ENST00000344722 APOBP04114 4563 aaKnown RBP6.71□□□□□ -1.34
SMC4-201ENST00000344722 CMYA5Q8N3K9 4069 aa6.7□□□□□ -1.34
SMC4-201ENST00000344722 VPS13BQ7Z7G8 4022 aa6.68□□□□□ -1.34
SMC4-201ENST00000344722 DNAH6Q9C0G6 4158 aa6.62□□□□□ -1.35
SMC4-201ENST00000344722 FRAS1Q86XX4 4008 aa6.62□□□□□ -1.35
SMC4-201ENST00000344722 KRTAP19-1Q8IUB9 90 aa6.57□□□□□ -1.36
SMC4-201ENST00000344722 KRTAP19-8Q3LI54 63 aa6.56□□□□□ -1.36
SMC4-201ENST00000344722 PRKDCP78527 4128 aaKnown RBP6.55□□□□□ -1.36
SMC4-201ENST00000344722 KMT2AQ03164 3969 aa6.54□□□□□ -1.36
SMC4-201ENST00000344722 KRTAP10-7P60409 375 aaPredicted RBP6.53□□□□□ -1.36
SMC4-201ENST00000344722 DNAH7Q8WXX0 4024 aa6.5□□□□□ -1.37
SMC4-201ENST00000344722 HECTD4Q9Y4D8 3996 aa6.48□□□□□ -1.37
SMC4-201ENST00000344722 FAT3Q8TDW7 4589 aa6.46□□□□□ -1.38
SMC4-201ENST00000344722 RYR1P21817 5038 aa6.44□□□□□ -1.38
SMC4-201ENST00000344722 MT1XP80297 61 aa6.43□□□□□ -1.38
SMC4-201ENST00000344722 LYSTQ99698 3801 aa6.37□□□□□ -1.39
SMC4-201ENST00000344722 DNHD1Q96M86 4753 aa6.36□□□□□ -1.39
SMC4-201ENST00000344722 MYCBP2O75592 4640 aa6.34□□□□□ -1.39
SMC4-201ENST00000344722 KRTAP12-4P60329 112 aa6.34□□□□□ -1.39
SMC4-201ENST00000344722 MT1BP07438 61 aa6.29□□□□□ -1.4
SMC4-201ENST00000344722 LRP1Q07954 4544 aaKnown RBP6.28□□□□□ -1.4
SMC4-201ENST00000344722 SPRR2FQ96RM1 72 aa6.22□□□□□ -1.41
SMC4-201ENST00000344722 KRTAP17-1Q9BYP8 105 aa6.21□□□□□ -1.41
SMC4-201ENST00000344722 RYR3Q15413 4870 aa6.2□□□□□ -1.42
SMC4-201ENST00000344722 HSPG2P98160 4391 aa6.17□□□□□ -1.42
SMC4-201ENST00000344722 LCE3BQ5TA77 95 aa6.15□□□□□ -1.42
SMC4-201ENST00000344722 RYR2Q92736 4967 aa6.15□□□□□ -1.42
SMC4-201ENST00000344722 KRTAP9-8Q9BYQ0 159 aa6.13□□□□□ -1.43
SMC4-201ENST00000344722 MT1GP13640 62 aa6.11□□□□□ -1.43
SMC4-201ENST00000344722 HERC1Q15751 4861 aa6.02□□□□□ -1.44
SMC4-201ENST00000344722 LCE2CQ5TA81 110 aa6.02□□□□□ -1.45
SMC4-201ENST00000344722 KRTAP4-8A0A0G2JLE6 195 aa6.02□□□□□ -1.45
SMC4-201ENST00000344722 KRTAP4-8Q9BYQ9 185 aa6.02□□□□□ -1.45
SMC4-201ENST00000344722 PKHD1L1Q86WI1 4243 aa5.99□□□□□ -1.45
SMC4-201ENST00000344722 LCE3DQ9BYE3 92 aa5.98□□□□□ -1.45
SMC4-201ENST00000344722 KRTAP9-3Q9BYQ3 159 aa5.98□□□□□ -1.45
SMC4-201ENST00000344722 LRP2P98164 4655 aa5.94□□□□□ -1.46
SMC4-201ENST00000344722 KIAA1109Q2LD37 5005 aa5.94□□□□□ -1.46
SMC4-201ENST00000344722 LCE3EQ5T5B0 92 aa5.93□□□□□ -1.46
SMC4-201ENST00000344722 PKD1P98161 4303 aa5.92□□□□□ -1.46
SMC4-201ENST00000344722 KRTAP19-2Q3LHN2 52 aa5.91□□□□□ -1.46
SMC4-201ENST00000344722 MT1LQ93083 61 aa5.85□□□□□ -1.47
SMC4-201ENST00000344722 KRTAP4-7Q9BYR0 210 aa5.83□□□□□ -1.48
SMC4-201ENST00000344722 PKHD1P08F94 4074 aa5.82□□□□□ -1.48
SMC4-201ENST00000344722 HYDINQ4G0P3 5121 aa5.81□□□□□ -1.48
SMC4-201ENST00000344722 TNXBP22105 4242 aa5.79□□□□□ -1.48
SMC4-201ENST00000344722 MT1EP04732 61 aa5.75□□□□□ -1.49
SMC4-201ENST00000344722 MUC17Q685J3 4493 aa5.73□□□□□ -1.49
SMC4-201ENST00000344722 HERC2O95714 4834 aa5.72□□□□□ -1.49
SMC4-201ENST00000344722 LPAP08519 4548 aa5.72□□□□□ -1.49
SMC4-201ENST00000344722 SPRR2EP22531 72 aa5.71□□□□□ -1.49
SMC4-201ENST00000344722 SPRR2BP35325 72 aa5.71□□□□□ -1.49
SMC4-201ENST00000344722 SPRR2AP35326 72 aa5.71□□□□□ -1.49
SMC4-201ENST00000344722 KRTAP19-3Q7Z4W3 81 aa5.71□□□□□ -1.5
SMC4-201ENST00000344722 FLGP20930 4061 aaPredicted RBP5.68□□□□□ -1.5
SMC4-201ENST00000344722 KMT2CQ8NEZ4 4911 aaKnown RBP5.66□□□□□ -1.5
SMC4-201ENST00000344722 LCE2BO14633 110 aa5.62□□□□□ -1.51
SMC4-201ENST00000344722 PRM1P04553 51 aa5.61□□□□□ -1.51
SMC4-201ENST00000344722 KRTAP2-3P0C7H8 128 aa5.61□□□□□ -1.51
SMC4-201ENST00000344722 KRTAP2-4Q9BYR9 128 aa5.61□□□□□ -1.51
SMC4-201ENST00000344722 KRTAP2-1Q9BYU5 128 aa5.61□□□□□ -1.51
SMC4-201ENST00000344722 SPRR2DP22532 72 aa5.52□□□□□ -1.53
SMC4-201ENST00000344722 MT1MQ8N339 61 aa5.52□□□□□ -1.53
SMC4-201ENST00000344722 LOC100996750A0A140TA64 210 aa5.47□□□□□ -1.53
SMC4-201ENST00000344722 KRTAP19-7Q3SYF9 63 aa5.39□□□□□ -1.55
SMC4-201ENST00000344722 PCLOQ9Y6V0 5065 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 176.9 ms