RNA–Protein interactions for RNA: ENST00000330374.6

VMA21-201, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VMA21, Length 4,717 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-201ENST00000330374 DNHD1Q96M86 4753 aa4.25□□□□□ -1.73
VMA21-201ENST00000330374 PKD1P98161 4303 aa4.23□□□□□ -1.73
VMA21-201ENST00000330374 PKHD1P08F94 4074 aa4.23□□□□□ -1.73
VMA21-201ENST00000330374 A0A0D9SG42 100 aa4.22□□□□□ -1.73
VMA21-201ENST00000330374 ROMO1P60602 79 aa4.21□□□□□ -1.74
VMA21-201ENST00000330374 COX6B2Q6YFQ2 88 aa4.2□□□□□ -1.74
VMA21-201ENST00000330374 FAT1Q14517 4588 aa4.2□□□□□ -1.74
VMA21-201ENST00000330374 C20orf166-AS1Q96NR2 134 aa4.16□□□□□ -1.74
VMA21-201ENST00000330374 C10orf95Q9H7T3 257 aa4.13□□□□□ -1.75
VMA21-201ENST00000330374 P0C880 135 aa4.12□□□□□ -1.75
VMA21-201ENST00000330374 DYNC1H1Q14204 4646 aaKnown RBP4.11□□□□□ -1.75
VMA21-201ENST00000330374 SACSQ9NZJ4 4579 aa4.11□□□□□ -1.75
VMA21-201ENST00000330374 KRTAP13-4Q3LI77 160 aa4.11□□□□□ -1.75
VMA21-201ENST00000330374 RPL37P61927 97 aaKnown RBP4.1□□□□□ -1.75
VMA21-201ENST00000330374 R4GN34 69 aa4.1□□□□□ -1.75
VMA21-201ENST00000330374 MYCBP2O75592 4640 aa4.1□□□□□ -1.75
VMA21-201ENST00000330374 RPS29P62273 56 aaKnown RBP4.1□□□□□ -1.75
VMA21-201ENST00000330374 TPRXLQ17RH7 258 aa4.08□□□□□ -1.76
VMA21-201ENST00000330374 KRTAP10-6P60371 365 aaPredicted RBP4.06□□□□□ -1.76
VMA21-201ENST00000330374 XP32Q5T750 250 aa4.06□□□□□ -1.76
VMA21-201ENST00000330374 LRP1Q07954 4544 aaKnown RBP4.05□□□□□ -1.76
VMA21-201ENST00000330374 HSPG2P98160 4391 aa4.04□□□□□ -1.76
VMA21-201ENST00000330374 KRTAP10-8P60410 259 aa4.03□□□□□ -1.76
VMA21-201ENST00000330374 S4R3F8 94 aa4.03□□□□□ -1.76
VMA21-201ENST00000330374 PKHD1L1Q86WI1 4243 aa4.01□□□□□ -1.77
VMA21-201ENST00000330374 APOBP04114 4563 aaKnown RBP4.01□□□□□ -1.77
VMA21-201ENST00000330374 KRTAP12-2P59991 146 aa3.99□□□□□ -1.77
VMA21-201ENST00000330374 KRTAP10-4P60372 401 aaPredicted RBP3.98□□□□□ -1.77
VMA21-201ENST00000330374 FAT3Q8TDW7 4589 aa3.97□□□□□ -1.77
VMA21-201ENST00000330374 LPAP08519 4548 aa3.91□□□□□ -1.78
VMA21-201ENST00000330374 KRTAP12-1P59990 96 aa3.91□□□□□ -1.78
VMA21-201ENST00000330374 A0A1B0GVY2 172 aa3.9□□□□□ -1.78
VMA21-201ENST00000330374 KMT2CQ8NEZ4 4911 aaKnown RBP3.9□□□□□ -1.79
VMA21-201ENST00000330374 TNXBP22105 4242 aa3.89□□□□□ -1.79
VMA21-201ENST00000330374 Q5VSD8 79 aa3.87□□□□□ -1.79
VMA21-201ENST00000330374 LRP2P98164 4655 aa3.86□□□□□ -1.79
VMA21-201ENST00000330374 MT3P25713 68 aa3.84□□□□□ -1.8
VMA21-201ENST00000330374 M0QZ58 72 aa3.83□□□□□ -1.8
VMA21-201ENST00000330374 RYR2Q92736 4967 aa3.83□□□□□ -1.8
VMA21-201ENST00000330374 KIAA1109Q2LD37 5005 aa3.78□□□□□ -1.8
VMA21-201ENST00000330374 KRTAP17-1Q9BYP8 105 aa3.76□□□□□ -1.81
VMA21-201ENST00000330374 RYR1P21817 5038 aa3.76□□□□□ -1.81
VMA21-201ENST00000330374 RYR3Q15413 4870 aa3.74□□□□□ -1.81
VMA21-201ENST00000330374 PLAC4Q8WY50 150 aa3.72□□□□□ -1.81
VMA21-201ENST00000330374 PRO2289Q9P1D8 64 aa3.72□□□□□ -1.81
VMA21-201ENST00000330374 MT1HL1P0DM35 61 aa3.72□□□□□ -1.81
VMA21-201ENST00000330374 ABCA13Q86UQ4 5058 aa3.71□□□□□ -1.82
VMA21-201ENST00000330374 PP632Q6XCG6 107 aa3.7□□□□□ -1.82
VMA21-201ENST00000330374 MUC2Q02817 5179 aa3.59□□□□□ -1.83
VMA21-201ENST00000330374 EPPK1P58107 5090 aaKnown RBP3.58□□□□□ -1.84
VMA21-201ENST00000330374 KRTAP4-1Q9BYQ7 146 aa3.57□□□□□ -1.84
VMA21-201ENST00000330374 KRTAP4-5Q9BYR2 181 aa3.56□□□□□ -1.84
VMA21-201ENST00000330374 MUC17Q685J3 4493 aa3.54□□□□□ -1.84
VMA21-201ENST00000330374 KRTAP21-3Q3LHN1 58 aa3.52□□□□□ -1.85
VMA21-201ENST00000330374 TNP1P09430 55 aa3.46□□□□□ -1.86
VMA21-201ENST00000330374 INE1O15225 51 aa3.45□□□□□ -1.86
VMA21-201ENST00000330374 LCE4AQ5TA78 99 aa3.43□□□□□ -1.86
VMA21-201ENST00000330374 HERC2O95714 4834 aa3.41□□□□□ -1.86
VMA21-201ENST00000330374 KRTAP9-6A0A140TA67 174 aa3.4□□□□□ -1.86
VMA21-201ENST00000330374 KRTAP9-7A8MTY7 169 aa3.4□□□□□ -1.86
VMA21-201ENST00000330374 KRTAP19-2Q3LHN2 52 aa3.4□□□□□ -1.86
VMA21-201ENST00000330374 PCLOQ9Y6V0 5065 aa3.4□□□□□ -1.87
VMA21-201ENST00000330374 KRTAP9-4Q9BYQ2 154 aa3.4□□□□□ -1.87
VMA21-201ENST00000330374 FAT4Q6V0I7 4981 aa3.4□□□□□ -1.87
VMA21-201ENST00000330374 FLGP20930 4061 aaPredicted RBP3.39□□□□□ -1.87
VMA21-201ENST00000330374 LCE3BQ5TA77 95 aa3.38□□□□□ -1.87
VMA21-201ENST00000330374 M0R2T5 61 aa3.31□□□□□ -1.88
VMA21-201ENST00000330374 HERC1Q15751 4861 aa3.31□□□□□ -1.88
VMA21-201ENST00000330374 LCE5AQ5TCM9 118 aa3.29□□□□□ -1.88
VMA21-201ENST00000330374 LCE3AQ5TA76 89 aa3.29□□□□□ -1.88
VMA21-201ENST00000330374 SPRR5A0A1B0GTR4 108 aa3.28□□□□□ -1.88
VMA21-201ENST00000330374 RNF213Q63HN8 5207 aa3.27□□□□□ -1.89
VMA21-201ENST00000330374 BIRC6Q9NR09 4857 aa3.26□□□□□ -1.89
VMA21-201ENST00000330374 HMCN2Q8NDA2 5059 aa3.24□□□□□ -1.89
VMA21-201ENST00000330374 KRTAP19-1Q8IUB9 90 aa3.22□□□□□ -1.89
VMA21-201ENST00000330374 KRTAP10-10P60014 251 aa3.21□□□□□ -1.9
VMA21-201ENST00000330374 SPRR2GQ9BYE4 73 aa3.19□□□□□ -1.9
VMA21-201ENST00000330374 UBR4Q5T4S7 5183 aa3.17□□□□□ -1.9
VMA21-201ENST00000330374 MT1FP04733 61 aa3.14□□□□□ -1.91
VMA21-201ENST00000330374 KRTAP9-3Q9BYQ3 159 aa3.11□□□□□ -1.91
VMA21-201ENST00000330374 MT2AP02795 61 aa3.11□□□□□ -1.91
VMA21-201ENST00000330374 MT1HP80294 61 aa3.11□□□□□ -1.91
VMA21-201ENST00000330374 KRTAP12-3P60328 96 aa3.1□□□□□ -1.91
VMA21-201ENST00000330374 LCE3CQ5T5A8 94 aa3.1□□□□□ -1.91
VMA21-201ENST00000330374 OBSCNQ5VST9 7968 aa3.09□□□□□ -1.91
VMA21-201ENST00000330374 KRTAP8-1Q8IUC2 63 aa3.09□□□□□ -1.92
VMA21-201ENST00000330374 KRTAP10-12P60413 245 aa3.07□□□□□ -1.92
VMA21-201ENST00000330374 KRTAP10-5P60370 271 aa3.06□□□□□ -1.92
VMA21-201ENST00000330374 MT1XP80297 61 aa3.05□□□□□ -1.92
VMA21-201ENST00000330374 KMT2DO14686 5537 aa3.04□□□□□ -1.92
VMA21-201ENST00000330374 KRTAP10-7P60409 375 aaPredicted RBP3.04□□□□□ -1.92
VMA21-201ENST00000330374 KRTAP9-8Q9BYQ0 159 aa3.04□□□□□ -1.92
VMA21-201ENST00000330374 MT1BP07438 61 aa3.03□□□□□ -1.92
VMA21-201ENST00000330374 USH2AO75445 5202 aa3□□□□□ -1.93
VMA21-201ENST00000330374 KRTAP9-9Q9BYP9 154 aa3□□□□□ -1.93
VMA21-201ENST00000330374 KRTAP19-8Q3LI54 63 aa2.99□□□□□ -1.93
VMA21-201ENST00000330374 KRTAP4-12Q9BQ66 201 aa2.95□□□□□ -1.94
VMA21-201ENST00000330374 KRTAP19-5Q3LI72 72 aa2.94□□□□□ -1.94
VMA21-201ENST00000330374 LCE1AQ5T7P2 110 aa2.92□□□□□ -1.94
VMA21-201ENST00000330374 KRTAP4-8Q9BYQ9 185 aa2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 105.6 ms