RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 PLECQ15149 4684 aaKnown RBP8.59□□□□□ -1.03
USP48-201ENST00000308271 KRTAP23-1A1A580 65 aa8.56□□□□□ -1.04
USP48-201ENST00000308271 INE1O15225 51 aa8.53□□□□□ -1.04
USP48-201ENST00000308271 DNAH17Q9UFH2 4485 aa8.52□□□□□ -1.05
USP48-201ENST00000308271 ALMS1Q8TCU4 4167 aa8.52□□□□□ -1.05
USP48-201ENST00000308271 DNAH11Q96DT5 4516 aa8.51□□□□□ -1.05
USP48-201ENST00000308271 DNAH5Q8TE73 4624 aa8.47□□□□□ -1.05
USP48-201ENST00000308271 VPS13DQ5THJ4 4388 aa8.46□□□□□ -1.05
USP48-201ENST00000308271 LORP23490 312 aaPredicted RBP8.46□□□□□ -1.06
USP48-201ENST00000308271 DNAH8Q96JB1 4490 aa8.4□□□□□ -1.06
USP48-201ENST00000308271 DNAH2Q9P225 4427 aa8.31□□□□□ -1.08
USP48-201ENST00000308271 DNAH3Q8TD57 4116 aa8.25□□□□□ -1.09
USP48-201ENST00000308271 LRP1BQ9NZR2 4599 aa8.22□□□□□ -1.09
USP48-201ENST00000308271 KRTAP10-12P60413 245 aa8.22□□□□□ -1.09
USP48-201ENST00000308271 STARD9Q9P2P6 4700 aa8.21□□□□□ -1.1
USP48-201ENST00000308271 LCE3AQ5TA76 89 aa8.17□□□□□ -1.1
USP48-201ENST00000308271 KRTAP12-3P60328 96 aa8.15□□□□□ -1.1
USP48-201ENST00000308271 DYNC1H1Q14204 4646 aaKnown RBP8.09□□□□□ -1.11
USP48-201ENST00000308271 FAT1Q14517 4588 aa8.09□□□□□ -1.12
USP48-201ENST00000308271 SACSQ9NZJ4 4579 aa8.08□□□□□ -1.12
USP48-201ENST00000308271 DYNC2H1Q8NCM8 4307 aaKnown RBP8.05□□□□□ -1.12
USP48-201ENST00000308271 ANK2Q01484 3957 aa8.05□□□□□ -1.12
USP48-201ENST00000308271 RYR1P21817 5038 aa7.99□□□□□ -1.13
USP48-201ENST00000308271 KRTAP4-1Q9BYQ7 146 aa7.97□□□□□ -1.13
USP48-201ENST00000308271 KIAA1109Q2LD37 5005 aa7.94□□□□□ -1.14
USP48-201ENST00000308271 PRKDCP78527 4128 aaKnown RBP7.93□□□□□ -1.14
USP48-201ENST00000308271 KMT2AQ03164 3969 aa7.91□□□□□ -1.14
USP48-201ENST00000308271 VPS13BQ7Z7G8 4022 aa7.9□□□□□ -1.15
USP48-201ENST00000308271 FAT2Q9NYQ8 4349 aa7.85□□□□□ -1.15
USP48-201ENST00000308271 FRAS1Q86XX4 4008 aa7.84□□□□□ -1.15
USP48-201ENST00000308271 APOBP04114 4563 aaKnown RBP7.8□□□□□ -1.16
USP48-201ENST00000308271 SPRR2GQ9BYE4 73 aa7.77□□□□□ -1.17
USP48-201ENST00000308271 HECTD4Q9Y4D8 3996 aa7.75□□□□□ -1.17
USP48-201ENST00000308271 RYR3Q15413 4870 aa7.73□□□□□ -1.17
USP48-201ENST00000308271 MYCBP2O75592 4640 aa7.71□□□□□ -1.18
USP48-201ENST00000308271 LYSTQ99698 3801 aa7.67□□□□□ -1.18
USP48-201ENST00000308271 CMYA5Q8N3K9 4069 aa7.66□□□□□ -1.18
USP48-201ENST00000308271 DNAH6Q9C0G6 4158 aa7.63□□□□□ -1.19
USP48-201ENST00000308271 KRTAP8-1Q8IUC2 63 aa7.6□□□□□ -1.19
USP48-201ENST00000308271 HYDINQ4G0P3 5121 aa7.58□□□□□ -1.2
USP48-201ENST00000308271 DNAH7Q8WXX0 4024 aa7.57□□□□□ -1.2
USP48-201ENST00000308271 MT2AP02795 61 aa7.54□□□□□ -1.2
USP48-201ENST00000308271 MT1HP80294 61 aa7.52□□□□□ -1.21
USP48-201ENST00000308271 FAT3Q8TDW7 4589 aa7.51□□□□□ -1.21
USP48-201ENST00000308271 LRP1Q07954 4544 aaKnown RBP7.48□□□□□ -1.21
USP48-201ENST00000308271 SPRR5A0A1B0GTR4 108 aa7.48□□□□□ -1.21
USP48-201ENST00000308271 HERC2O95714 4834 aa7.46□□□□□ -1.21
USP48-201ENST00000308271 CRCT1Q9UGL9 99 aa7.46□□□□□ -1.22
USP48-201ENST00000308271 KRTAP17-1Q9BYP8 105 aa7.45□□□□□ -1.22
USP48-201ENST00000308271 MT1FP04733 61 aa7.43□□□□□ -1.22
USP48-201ENST00000308271 KRTAP19-1Q8IUB9 90 aa7.36□□□□□ -1.23
USP48-201ENST00000308271 BIRC6Q9NR09 4857 aa7.35□□□□□ -1.23
USP48-201ENST00000308271 LCE3CQ5T5A8 94 aa7.3□□□□□ -1.24
USP48-201ENST00000308271 RYR2Q92736 4967 aa7.3□□□□□ -1.24
USP48-201ENST00000308271 KRTAP19-5Q3LI72 72 aa7.27□□□□□ -1.25
USP48-201ENST00000308271 KRTAP19-8Q3LI54 63 aa7.25□□□□□ -1.25
USP48-201ENST00000308271 KRTAP10-5P60370 271 aa7.24□□□□□ -1.25
USP48-201ENST00000308271 LRP2P98164 4655 aa7.23□□□□□ -1.25
USP48-201ENST00000308271 KMT2CQ8NEZ4 4911 aaKnown RBP7.17□□□□□ -1.26
USP48-201ENST00000308271 PCLOQ9Y6V0 5065 aa7.16□□□□□ -1.26
USP48-201ENST00000308271 KRTAP19-4Q3LI73 84 aa7.14□□□□□ -1.27
USP48-201ENST00000308271 PKHD1P08F94 4074 aa7.12□□□□□ -1.27
USP48-201ENST00000308271 KRTAP10-7P60409 375 aaPredicted RBP7.1□□□□□ -1.27
USP48-201ENST00000308271 MT1XP80297 61 aa7.08□□□□□ -1.28
USP48-201ENST00000308271 PKD1P98161 4303 aa7.06□□□□□ -1.28
USP48-201ENST00000308271 PKHD1L1Q86WI1 4243 aa7.02□□□□□ -1.29
USP48-201ENST00000308271 MT1BP07438 61 aa7□□□□□ -1.29
USP48-201ENST00000308271 HSPG2P98160 4391 aa6.96□□□□□ -1.3
USP48-201ENST00000308271 KRTAP19-2Q3LHN2 52 aa6.94□□□□□ -1.3
USP48-201ENST00000308271 LCE2CQ5TA81 110 aa6.91□□□□□ -1.3
USP48-201ENST00000308271 KRTAP9-8Q9BYQ0 159 aa6.91□□□□□ -1.3
USP48-201ENST00000308271 EPPK1P58107 5090 aaKnown RBP6.88□□□□□ -1.31
USP48-201ENST00000308271 HERC1Q15751 4861 aa6.86□□□□□ -1.31
USP48-201ENST00000308271 TNXBP22105 4242 aa6.83□□□□□ -1.32
USP48-201ENST00000308271 LPAP08519 4548 aa6.79□□□□□ -1.32
USP48-201ENST00000308271 SPRR2FQ96RM1 72 aa6.78□□□□□ -1.32
USP48-201ENST00000308271 ABCA13Q86UQ4 5058 aa6.77□□□□□ -1.33
USP48-201ENST00000308271 MUC17Q685J3 4493 aa6.76□□□□□ -1.33
USP48-201ENST00000308271 UBR4Q5T4S7 5183 aa6.76□□□□□ -1.33
USP48-201ENST00000308271 FSIP2Q5CZC0 6907 aa6.73□□□□□ -1.33
USP48-201ENST00000308271 KRTAP9-3Q9BYQ3 159 aa6.69□□□□□ -1.34
USP48-201ENST00000308271 FLGP20930 4061 aaPredicted RBP6.63□□□□□ -1.35
USP48-201ENST00000308271 KRTAP4-8A0A0G2JLE6 195 aa6.61□□□□□ -1.35
USP48-201ENST00000308271 KRTAP4-8Q9BYQ9 185 aa6.61□□□□□ -1.35
USP48-201ENST00000308271 KRTAP12-4P60329 112 aa6.6□□□□□ -1.35
USP48-201ENST00000308271 MT1GP13640 62 aa6.46□□□□□ -1.38
USP48-201ENST00000308271 LCE3BQ5TA77 95 aa6.4□□□□□ -1.39
USP48-201ENST00000308271 RNF213Q63HN8 5207 aa6.39□□□□□ -1.39
USP48-201ENST00000308271 KRTAP4-7Q9BYR0 210 aa6.37□□□□□ -1.39
USP48-201ENST00000308271 MT1LQ93083 61 aa6.37□□□□□ -1.39
USP48-201ENST00000308271 SPRR2EP22531 72 aa6.36□□□□□ -1.39
USP48-201ENST00000308271 SPRR2BP35325 72 aa6.36□□□□□ -1.39
USP48-201ENST00000308271 SPRR2AP35326 72 aa6.36□□□□□ -1.39
USP48-201ENST00000308271 KRTAP9-2Q9BYQ4 174 aa6.35□□□□□ -1.39
USP48-201ENST00000308271 LCE2BO14633 110 aa6.32□□□□□ -1.4
USP48-201ENST00000308271 MT1EP04732 61 aa6.29□□□□□ -1.4
USP48-201ENST00000308271 FAT4Q6V0I7 4981 aa6.29□□□□□ -1.4
USP48-201ENST00000308271 SYNE1Q8NF91 8797 aaKnown RBP6.28□□□□□ -1.4
USP48-201ENST00000308271 LCE3DQ9BYE3 92 aa6.2□□□□□ -1.42
USP48-201ENST00000308271 HMCN2Q8NDA2 5059 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 134.1 ms