RNA–Protein interactions for RNA: ENST00000303407.11

BRD3-201, Transcript of bromodomain containing 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene BRD3, Length 5,652 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRD3-201ENST00000303407 DNAH3Q8TD57 4116 aa7.27□□□□□ -1.25
BRD3-201ENST00000303407 COL7A1Q02388 2944 aa7.27□□□□□ -1.25
BRD3-201ENST00000303407 VPS13DQ5THJ4 4388 aa7.26□□□□□ -1.25
BRD3-201ENST00000303407 DNAH17Q9UFH2 4485 aa7.26□□□□□ -1.25
BRD3-201ENST00000303407 DNAH5Q8TE73 4624 aa7.25□□□□□ -1.25
BRD3-201ENST00000303407 LORP23490 312 aaPredicted RBP7.15□□□□□ -1.27
BRD3-201ENST00000303407 INE1O15225 51 aa7.15□□□□□ -1.27
BRD3-201ENST00000303407 DNAH2Q9P225 4427 aa7.13□□□□□ -1.27
BRD3-201ENST00000303407 KRTAP10-12P60413 245 aa7.13□□□□□ -1.27
BRD3-201ENST00000303407 DNAH11Q96DT5 4516 aa7.13□□□□□ -1.27
BRD3-201ENST00000303407 STARD9Q9P2P6 4700 aa7.08□□□□□ -1.28
BRD3-201ENST00000303407 ANK2Q01484 3957 aa6.99□□□□□ -1.29
BRD3-201ENST00000303407 CMYA5Q8N3K9 4069 aa6.99□□□□□ -1.29
BRD3-201ENST00000303407 DYNC2H1Q8NCM8 4307 aaKnown RBP6.99□□□□□ -1.29
BRD3-201ENST00000303407 DNAH8Q96JB1 4490 aa6.98□□□□□ -1.29
BRD3-201ENST00000303407 LCE3AQ5TA76 89 aa6.98□□□□□ -1.29
BRD3-201ENST00000303407 KRTAP23-1A1A580 65 aa6.96□□□□□ -1.29
BRD3-201ENST00000303407 LRP1BQ9NZR2 4599 aa6.96□□□□□ -1.3
BRD3-201ENST00000303407 DYNC1H1Q14204 4646 aaKnown RBP6.95□□□□□ -1.3
BRD3-201ENST00000303407 FAT2Q9NYQ8 4349 aa6.94□□□□□ -1.3
BRD3-201ENST00000303407 KRTAP12-3P60328 96 aa6.93□□□□□ -1.3
BRD3-201ENST00000303407 KRTAP4-1Q9BYQ7 146 aa6.93□□□□□ -1.3
BRD3-201ENST00000303407 SACSQ9NZJ4 4579 aa6.93□□□□□ -1.3
BRD3-201ENST00000303407 KMT2AQ03164 3969 aa6.87□□□□□ -1.31
BRD3-201ENST00000303407 DNAH6Q9C0G6 4158 aa6.85□□□□□ -1.31
BRD3-201ENST00000303407 PRKDCP78527 4128 aaKnown RBP6.83□□□□□ -1.32
BRD3-201ENST00000303407 DNHD1Q96M86 4753 aa6.8□□□□□ -1.32
BRD3-201ENST00000303407 CRCT1Q9UGL9 99 aa6.8□□□□□ -1.32
BRD3-201ENST00000303407 FRAS1Q86XX4 4008 aa6.77□□□□□ -1.33
BRD3-201ENST00000303407 FAT1Q14517 4588 aa6.77□□□□□ -1.33
BRD3-201ENST00000303407 VPS13BQ7Z7G8 4022 aa6.76□□□□□ -1.33
BRD3-201ENST00000303407 MT1HP80294 61 aa6.72□□□□□ -1.33
BRD3-201ENST00000303407 DNAH7Q8WXX0 4024 aa6.7□□□□□ -1.34
BRD3-201ENST00000303407 HECTD4Q9Y4D8 3996 aa6.65□□□□□ -1.34
BRD3-201ENST00000303407 LYSTQ99698 3801 aa6.63□□□□□ -1.35
BRD3-201ENST00000303407 MT2AP02795 61 aa6.6□□□□□ -1.35
BRD3-201ENST00000303407 APOBP04114 4563 aaKnown RBP6.59□□□□□ -1.36
BRD3-201ENST00000303407 SPRR2GQ9BYE4 73 aa6.59□□□□□ -1.36
BRD3-201ENST00000303407 RYR1P21817 5038 aa6.52□□□□□ -1.37
BRD3-201ENST00000303407 KRTAP8-1Q8IUC2 63 aa6.5□□□□□ -1.37
BRD3-201ENST00000303407 MT1FP04733 61 aa6.5□□□□□ -1.37
BRD3-201ENST00000303407 KRTAP17-1Q9BYP8 105 aa6.49□□□□□ -1.37
BRD3-201ENST00000303407 FAT3Q8TDW7 4589 aa6.4□□□□□ -1.39
BRD3-201ENST00000303407 RYR3Q15413 4870 aa6.37□□□□□ -1.39
BRD3-201ENST00000303407 KRTAP10-5P60370 271 aa6.3□□□□□ -1.4
BRD3-201ENST00000303407 KRTAP19-5Q3LI72 72 aa6.29□□□□□ -1.4
BRD3-201ENST00000303407 HYDINQ4G0P3 5121 aa6.27□□□□□ -1.41
BRD3-201ENST00000303407 LRP1Q07954 4544 aaKnown RBP6.25□□□□□ -1.41
BRD3-201ENST00000303407 RYR2Q92736 4967 aa6.25□□□□□ -1.41
BRD3-201ENST00000303407 HSPG2P98160 4391 aa6.22□□□□□ -1.41
BRD3-201ENST00000303407 MYCBP2O75592 4640 aa6.21□□□□□ -1.42
BRD3-201ENST00000303407 LCE3CQ5T5A8 94 aa6.17□□□□□ -1.42
BRD3-201ENST00000303407 KRTAP19-1Q8IUB9 90 aa6.17□□□□□ -1.42
BRD3-201ENST00000303407 PKD1P98161 4303 aa6.14□□□□□ -1.43
BRD3-201ENST00000303407 KRTAP19-8Q3LI54 63 aa6.13□□□□□ -1.43
BRD3-201ENST00000303407 KRTAP10-7P60409 375 aaPredicted RBP6.12□□□□□ -1.43
BRD3-201ENST00000303407 PKHD1L1Q86WI1 4243 aa6.1□□□□□ -1.43
BRD3-201ENST00000303407 KIAA1109Q2LD37 5005 aa6.09□□□□□ -1.43
BRD3-201ENST00000303407 PKHD1P08F94 4074 aa6.08□□□□□ -1.44
BRD3-201ENST00000303407 SPRR2FQ96RM1 72 aa6.04□□□□□ -1.44
BRD3-201ENST00000303407 TNXBP22105 4242 aa6.03□□□□□ -1.44
BRD3-201ENST00000303407 MT1XP80297 61 aa6.03□□□□□ -1.44
BRD3-201ENST00000303407 KRTAP9-8Q9BYQ0 159 aa5.98□□□□□ -1.45
BRD3-201ENST00000303407 LPAP08519 4548 aa5.97□□□□□ -1.45
BRD3-201ENST00000303407 MT1BP07438 61 aa5.97□□□□□ -1.45
BRD3-201ENST00000303407 HERC1Q15751 4861 aa5.95□□□□□ -1.46
BRD3-201ENST00000303407 LCE2CQ5TA81 110 aa5.95□□□□□ -1.46
BRD3-201ENST00000303407 KRTAP19-4Q3LI73 84 aa5.9□□□□□ -1.46
BRD3-201ENST00000303407 LRP2P98164 4655 aa5.87□□□□□ -1.47
BRD3-201ENST00000303407 KRTAP9-3Q9BYQ3 159 aa5.83□□□□□ -1.48
BRD3-201ENST00000303407 HERC2O95714 4834 aa5.82□□□□□ -1.48
BRD3-201ENST00000303407 BIRC6Q9NR09 4857 aa5.8□□□□□ -1.48
BRD3-201ENST00000303407 KMT2CQ8NEZ4 4911 aaKnown RBP5.76□□□□□ -1.49
BRD3-201ENST00000303407 SPRR5A0A1B0GTR4 108 aa5.74□□□□□ -1.49
BRD3-201ENST00000303407 MUC17Q685J3 4493 aa5.74□□□□□ -1.49
BRD3-201ENST00000303407 KRTAP4-8A0A0G2JLE6 195 aa5.74□□□□□ -1.49
BRD3-201ENST00000303407 KRTAP4-8Q9BYQ9 185 aa5.74□□□□□ -1.49
BRD3-201ENST00000303407 KRTAP19-2Q3LHN2 52 aa5.74□□□□□ -1.49
BRD3-201ENST00000303407 MT1GP13640 62 aa5.67□□□□□ -1.5
BRD3-201ENST00000303407 SPRR2EP22531 72 aa5.67□□□□□ -1.5
BRD3-201ENST00000303407 SPRR2BP35325 72 aa5.67□□□□□ -1.5
BRD3-201ENST00000303407 SPRR2AP35326 72 aa5.67□□□□□ -1.5
BRD3-201ENST00000303407 LCE3BQ5TA77 95 aa5.61□□□□□ -1.51
BRD3-201ENST00000303407 FLGP20930 4061 aaPredicted RBP5.6□□□□□ -1.51
BRD3-201ENST00000303407 LCE2BO14633 110 aa5.54□□□□□ -1.52
BRD3-201ENST00000303407 PCLOQ9Y6V0 5065 aa5.52□□□□□ -1.53
BRD3-201ENST00000303407 SPRR2DP22532 72 aa5.48□□□□□ -1.53
BRD3-201ENST00000303407 KRTAP12-4P60329 112 aa5.44□□□□□ -1.54
BRD3-201ENST00000303407 KRTAP4-7Q9BYR0 210 aa5.43□□□□□ -1.54
BRD3-201ENST00000303407 EPPK1P58107 5090 aaKnown RBP5.43□□□□□ -1.54
BRD3-201ENST00000303407 MT1LQ93083 61 aa5.41□□□□□ -1.54
BRD3-201ENST00000303407 MT1EP04732 61 aa5.38□□□□□ -1.55
BRD3-201ENST00000303407 KRTAP19-3Q7Z4W3 81 aa5.38□□□□□ -1.55
BRD3-201ENST00000303407 ABCA13Q86UQ4 5058 aa5.36□□□□□ -1.55
BRD3-201ENST00000303407 LCE3DQ9BYE3 92 aa5.26□□□□□ -1.57
BRD3-201ENST00000303407 KRTAP19-6Q3LI70 58 aa5.21□□□□□ -1.58
BRD3-201ENST00000303407 MT1MQ8N339 61 aa5.18□□□□□ -1.58
BRD3-201ENST00000303407 LCE3EQ5T5B0 92 aa5.16□□□□□ -1.58
BRD3-201ENST00000303407 LOC100996750A0A140TA64 210 aa5.14□□□□□ -1.59
BRD3-201ENST00000303407 FAT4Q6V0I7 4981 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms