RNA–Protein interactions for RNA: ENST00000284637.13

SH3RF1-201, Transcript of SH3 domain containing ring finger 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SH3RF1, Length 5,272 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-201ENST00000284637 LCE3AQ5TA76 89 aa7.05□□□□□ -1.28
SH3RF1-201ENST00000284637 DNAH5Q8TE73 4624 aa6.87□□□□□ -1.31
SH3RF1-201ENST00000284637 ZNF469Q96JG9 3925 aaPredicted RBP6.77□□□□□ -1.33
SH3RF1-201ENST00000284637 ALMS1Q8TCU4 4167 aa6.76□□□□□ -1.33
SH3RF1-201ENST00000284637 DNAH9Q9NYC9 4486 aa6.75□□□□□ -1.33
SH3RF1-201ENST00000284637 DNAH11Q96DT5 4516 aa6.74□□□□□ -1.33
SH3RF1-201ENST00000284637 DNAH10Q8IVF4 4471 aa6.72□□□□□ -1.33
SH3RF1-201ENST00000284637 DNAH1Q9P2D7 4330 aa6.72□□□□□ -1.33
SH3RF1-201ENST00000284637 AKAP9Q99996 3911 aa6.71□□□□□ -1.33
SH3RF1-201ENST00000284637 PLECQ15149 4684 aaKnown RBP6.71□□□□□ -1.34
SH3RF1-201ENST00000284637 FAT1Q14517 4588 aa6.68□□□□□ -1.34
SH3RF1-201ENST00000284637 KRTAP4-1Q9BYQ7 146 aa6.67□□□□□ -1.34
SH3RF1-201ENST00000284637 KRTAP10-5P60370 271 aa6.64□□□□□ -1.35
SH3RF1-201ENST00000284637 DNAH8Q96JB1 4490 aa6.59□□□□□ -1.35
SH3RF1-201ENST00000284637 DNAH2Q9P225 4427 aa6.55□□□□□ -1.36
SH3RF1-201ENST00000284637 DNHD1Q96M86 4753 aa6.51□□□□□ -1.37
SH3RF1-201ENST00000284637 KRTAP8-1Q8IUC2 63 aa6.5□□□□□ -1.37
SH3RF1-201ENST00000284637 DNAH17Q9UFH2 4485 aa6.49□□□□□ -1.37
SH3RF1-201ENST00000284637 DYNC1H1Q14204 4646 aaKnown RBP6.45□□□□□ -1.38
SH3RF1-201ENST00000284637 VPS13DQ5THJ4 4388 aa6.44□□□□□ -1.38
SH3RF1-201ENST00000284637 MT1HP80294 61 aa6.43□□□□□ -1.38
SH3RF1-201ENST00000284637 MT2AP02795 61 aa6.42□□□□□ -1.38
SH3RF1-201ENST00000284637 SPRR2GQ9BYE4 73 aa6.41□□□□□ -1.38
SH3RF1-201ENST00000284637 LRP1BQ9NZR2 4599 aa6.4□□□□□ -1.38
SH3RF1-201ENST00000284637 RYR1P21817 5038 aa6.4□□□□□ -1.38
SH3RF1-201ENST00000284637 SACSQ9NZJ4 4579 aa6.35□□□□□ -1.39
SH3RF1-201ENST00000284637 STARD9Q9P2P6 4700 aa6.33□□□□□ -1.4
SH3RF1-201ENST00000284637 MT1FP04733 61 aa6.31□□□□□ -1.4
SH3RF1-201ENST00000284637 SPRR5A0A1B0GTR4 108 aa6.29□□□□□ -1.4
SH3RF1-201ENST00000284637 KRTAP19-5Q3LI72 72 aa6.27□□□□□ -1.4
SH3RF1-201ENST00000284637 APOBP04114 4563 aaKnown RBP6.26□□□□□ -1.41
SH3RF1-201ENST00000284637 MYCBP2O75592 4640 aa6.26□□□□□ -1.41
SH3RF1-201ENST00000284637 ANK2Q01484 3957 aa6.23□□□□□ -1.41
SH3RF1-201ENST00000284637 LCE3CQ5T5A8 94 aa6.2□□□□□ -1.42
SH3RF1-201ENST00000284637 FAT2Q9NYQ8 4349 aa6.18□□□□□ -1.42
SH3RF1-201ENST00000284637 DYNC2H1Q8NCM8 4307 aaKnown RBP6.17□□□□□ -1.42
SH3RF1-201ENST00000284637 VPS13BQ7Z7G8 4022 aa6.16□□□□□ -1.42
SH3RF1-201ENST00000284637 DNAH3Q8TD57 4116 aa6.16□□□□□ -1.42
SH3RF1-201ENST00000284637 LYSTQ99698 3801 aa6.15□□□□□ -1.43
SH3RF1-201ENST00000284637 KMT2AQ03164 3969 aa6.1□□□□□ -1.43
SH3RF1-201ENST00000284637 PRKDCP78527 4128 aaKnown RBP6.06□□□□□ -1.44
SH3RF1-201ENST00000284637 SPRR2FQ96RM1 72 aa6.04□□□□□ -1.44
SH3RF1-201ENST00000284637 KRTAP10-7P60409 375 aaPredicted RBP6.03□□□□□ -1.44
SH3RF1-201ENST00000284637 KRTAP19-1Q8IUB9 90 aa6.03□□□□□ -1.44
SH3RF1-201ENST00000284637 KIAA1109Q2LD37 5005 aa6.02□□□□□ -1.45
SH3RF1-201ENST00000284637 KRTAP19-4Q3LI73 84 aa5.98□□□□□ -1.45
SH3RF1-201ENST00000284637 RYR3Q15413 4870 aa5.97□□□□□ -1.45
SH3RF1-201ENST00000284637 FAT3Q8TDW7 4589 aa5.96□□□□□ -1.46
SH3RF1-201ENST00000284637 KRTAP17-1Q9BYP8 105 aa5.95□□□□□ -1.46
SH3RF1-201ENST00000284637 LRP1Q07954 4544 aaKnown RBP5.94□□□□□ -1.46
SH3RF1-201ENST00000284637 FRAS1Q86XX4 4008 aa5.94□□□□□ -1.46
SH3RF1-201ENST00000284637 KRTAP19-8Q3LI54 63 aa5.92□□□□□ -1.46
SH3RF1-201ENST00000284637 MT1XP80297 61 aa5.87□□□□□ -1.47
SH3RF1-201ENST00000284637 CMYA5Q8N3K9 4069 aa5.81□□□□□ -1.48
SH3RF1-201ENST00000284637 DNAH6Q9C0G6 4158 aa5.8□□□□□ -1.48
SH3RF1-201ENST00000284637 KRTAP12-4P60329 112 aa5.79□□□□□ -1.48
SH3RF1-201ENST00000284637 MT1BP07438 61 aa5.77□□□□□ -1.49
SH3RF1-201ENST00000284637 LCE3BQ5TA77 95 aa5.76□□□□□ -1.49
SH3RF1-201ENST00000284637 LRP2P98164 4655 aa5.74□□□□□ -1.49
SH3RF1-201ENST00000284637 DNAH7Q8WXX0 4024 aa5.73□□□□□ -1.49
SH3RF1-201ENST00000284637 HECTD4Q9Y4D8 3996 aa5.73□□□□□ -1.49
SH3RF1-201ENST00000284637 RYR2Q92736 4967 aa5.72□□□□□ -1.49
SH3RF1-201ENST00000284637 MT1GP13640 62 aa5.71□□□□□ -1.49
SH3RF1-201ENST00000284637 KRTAP4-8A0A0G2JLE6 195 aa5.71□□□□□ -1.5
SH3RF1-201ENST00000284637 KRTAP4-8Q9BYQ9 185 aa5.71□□□□□ -1.5
SH3RF1-201ENST00000284637 KRTAP9-8Q9BYQ0 159 aa5.69□□□□□ -1.5
SH3RF1-201ENST00000284637 LCE2CQ5TA81 110 aa5.58□□□□□ -1.52
SH3RF1-201ENST00000284637 HERC2O95714 4834 aa5.58□□□□□ -1.52
SH3RF1-201ENST00000284637 SPRR2EP22531 72 aa5.54□□□□□ -1.52
SH3RF1-201ENST00000284637 SPRR2BP35325 72 aa5.54□□□□□ -1.52
SH3RF1-201ENST00000284637 SPRR2AP35326 72 aa5.54□□□□□ -1.52
SH3RF1-201ENST00000284637 PKD1P98161 4303 aa5.54□□□□□ -1.52
SH3RF1-201ENST00000284637 KRTAP9-3Q9BYQ3 159 aa5.54□□□□□ -1.52
SH3RF1-201ENST00000284637 PCLOQ9Y6V0 5065 aa5.5□□□□□ -1.53
SH3RF1-201ENST00000284637 KRTAP4-7Q9BYR0 210 aa5.48□□□□□ -1.53
SH3RF1-201ENST00000284637 HYDINQ4G0P3 5121 aa5.48□□□□□ -1.53
SH3RF1-201ENST00000284637 LPAP08519 4548 aa5.45□□□□□ -1.54
SH3RF1-201ENST00000284637 LCE3DQ9BYE3 92 aa5.44□□□□□ -1.54
SH3RF1-201ENST00000284637 PKHD1P08F94 4074 aa5.43□□□□□ -1.54
SH3RF1-201ENST00000284637 HSPG2P98160 4391 aa5.41□□□□□ -1.54
SH3RF1-201ENST00000284637 KMT2CQ8NEZ4 4911 aaKnown RBP5.4□□□□□ -1.55
SH3RF1-201ENST00000284637 SYNE1Q8NF91 8797 aaKnown RBP5.38□□□□□ -1.55
SH3RF1-201ENST00000284637 LCE2BO14633 110 aa5.37□□□□□ -1.55
SH3RF1-201ENST00000284637 LCE3EQ5T5B0 92 aa5.36□□□□□ -1.55
SH3RF1-201ENST00000284637 HERC1Q15751 4861 aa5.35□□□□□ -1.55
SH3RF1-201ENST00000284637 SPRR2DP22532 72 aa5.34□□□□□ -1.55
SH3RF1-201ENST00000284637 KRTAP19-2Q3LHN2 52 aa5.32□□□□□ -1.56
SH3RF1-201ENST00000284637 MT1LQ93083 61 aa5.32□□□□□ -1.56
SH3RF1-201ENST00000284637 KRTAP19-3Q7Z4W3 81 aa5.28□□□□□ -1.56
SH3RF1-201ENST00000284637 MUC17Q685J3 4493 aa5.27□□□□□ -1.57
SH3RF1-201ENST00000284637 EPPK1P58107 5090 aaKnown RBP5.27□□□□□ -1.57
SH3RF1-201ENST00000284637 MT1EP04732 61 aa5.25□□□□□ -1.57
SH3RF1-201ENST00000284637 BIRC6Q9NR09 4857 aa5.22□□□□□ -1.57
SH3RF1-201ENST00000284637 FLGP20930 4061 aaPredicted RBP5.17□□□□□ -1.58
SH3RF1-201ENST00000284637 ABCA13Q86UQ4 5058 aa5.15□□□□□ -1.59
SH3RF1-201ENST00000284637 LOC100996750A0A140TA64 210 aa5.13□□□□□ -1.59
SH3RF1-201ENST00000284637 PKHD1L1Q86WI1 4243 aa5.13□□□□□ -1.59
SH3RF1-201ENST00000284637 TNXBP22105 4242 aa5.11□□□□□ -1.59
SH3RF1-201ENST00000284637 PRM1P04553 51 aa5.1□□□□□ -1.59
SH3RF1-201ENST00000284637 UBR4Q5T4S7 5183 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms