RNA–Protein interactions for RNA: ENST00000254667.7

PTPRE-201, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRE, Length 5,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-201ENST00000254667 DNAH9Q9NYC9 4486 aa8.04□□□□□ -1.12
PTPRE-201ENST00000254667 LORP23490 312 aaPredicted RBP8.02□□□□□ -1.13
PTPRE-201ENST00000254667 LCE3AQ5TA76 89 aa8.02□□□□□ -1.13
PTPRE-201ENST00000254667 DNAH5Q8TE73 4624 aa8□□□□□ -1.13
PTPRE-201ENST00000254667 CRCT1Q9UGL9 99 aa7.99□□□□□ -1.13
PTPRE-201ENST00000254667 DNAH10Q8IVF4 4471 aa7.88□□□□□ -1.15
PTPRE-201ENST00000254667 DNAH11Q96DT5 4516 aa7.86□□□□□ -1.15
PTPRE-201ENST00000254667 DNAH1Q9P2D7 4330 aa7.85□□□□□ -1.15
PTPRE-201ENST00000254667 PLECQ15149 4684 aaKnown RBP7.82□□□□□ -1.16
PTPRE-201ENST00000254667 KRTAP4-1Q9BYQ7 146 aa7.8□□□□□ -1.16
PTPRE-201ENST00000254667 KRTAP8-1Q8IUC2 63 aa7.79□□□□□ -1.16
PTPRE-201ENST00000254667 DNAH2Q9P225 4427 aa7.79□□□□□ -1.16
PTPRE-201ENST00000254667 MT1HP80294 61 aa7.76□□□□□ -1.17
PTPRE-201ENST00000254667 DNAH3Q8TD57 4116 aa7.72□□□□□ -1.17
PTPRE-201ENST00000254667 VPS13DQ5THJ4 4388 aa7.7□□□□□ -1.18
PTPRE-201ENST00000254667 DNAH17Q9UFH2 4485 aa7.68□□□□□ -1.18
PTPRE-201ENST00000254667 MT2AP02795 61 aa7.65□□□□□ -1.18
PTPRE-201ENST00000254667 SPRR2GQ9BYE4 73 aa7.65□□□□□ -1.18
PTPRE-201ENST00000254667 DYNC1H1Q14204 4646 aaKnown RBP7.6□□□□□ -1.19
PTPRE-201ENST00000254667 DNHD1Q96M86 4753 aa7.58□□□□□ -1.2
PTPRE-201ENST00000254667 CMYA5Q8N3K9 4069 aa7.58□□□□□ -1.2
PTPRE-201ENST00000254667 ANK2Q01484 3957 aa7.56□□□□□ -1.2
PTPRE-201ENST00000254667 DYNC2H1Q8NCM8 4307 aaKnown RBP7.52□□□□□ -1.21
PTPRE-201ENST00000254667 LRP1BQ9NZR2 4599 aa7.5□□□□□ -1.21
PTPRE-201ENST00000254667 CSMD3Q7Z407 3707 aa7.5□□□□□ -1.21
PTPRE-201ENST00000254667 MT1FP04733 61 aa7.46□□□□□ -1.22
PTPRE-201ENST00000254667 KRTAP10-5P60370 271 aa7.45□□□□□ -1.22
PTPRE-201ENST00000254667 STARD9Q9P2P6 4700 aa7.44□□□□□ -1.22
PTPRE-201ENST00000254667 SACSQ9NZJ4 4579 aa7.44□□□□□ -1.22
PTPRE-201ENST00000254667 DNAH6Q9C0G6 4158 aa7.44□□□□□ -1.22
PTPRE-201ENST00000254667 FAT1Q14517 4588 aa7.44□□□□□ -1.22
PTPRE-201ENST00000254667 FAT2Q9NYQ8 4349 aa7.41□□□□□ -1.22
PTPRE-201ENST00000254667 RYR1P21817 5038 aa7.39□□□□□ -1.23
PTPRE-201ENST00000254667 DNAH8Q96JB1 4490 aa7.35□□□□□ -1.23
PTPRE-201ENST00000254667 KRTAP19-4Q3LI73 84 aa7.28□□□□□ -1.24
PTPRE-201ENST00000254667 KRTAP19-5Q3LI72 72 aa7.24□□□□□ -1.25
PTPRE-201ENST00000254667 SPRR2FQ96RM1 72 aa7.21□□□□□ -1.25
PTPRE-201ENST00000254667 PRKDCP78527 4128 aaKnown RBP7.21□□□□□ -1.26
PTPRE-201ENST00000254667 KRTAP10-7P60409 375 aaPredicted RBP7.19□□□□□ -1.26
PTPRE-201ENST00000254667 APOBP04114 4563 aaKnown RBP7.18□□□□□ -1.26
PTPRE-201ENST00000254667 DNAH7Q8WXX0 4024 aa7.18□□□□□ -1.26
PTPRE-201ENST00000254667 KMT2AQ03164 3969 aa7.16□□□□□ -1.26
PTPRE-201ENST00000254667 LCE3CQ5T5A8 94 aa7.14□□□□□ -1.27
PTPRE-201ENST00000254667 KRTAP19-8Q3LI54 63 aa7.14□□□□□ -1.27
PTPRE-201ENST00000254667 HECTD4Q9Y4D8 3996 aa7.13□□□□□ -1.27
PTPRE-201ENST00000254667 RYR3Q15413 4870 aa7.11□□□□□ -1.27
PTPRE-201ENST00000254667 KRTAP19-1Q8IUB9 90 aa7.04□□□□□ -1.28
PTPRE-201ENST00000254667 VPS13BQ7Z7G8 4022 aa7.03□□□□□ -1.28
PTPRE-201ENST00000254667 FRAS1Q86XX4 4008 aa7.02□□□□□ -1.28
PTPRE-201ENST00000254667 LYSTQ99698 3801 aa7.01□□□□□ -1.29
PTPRE-201ENST00000254667 KRTAP17-1Q9BYP8 105 aa7□□□□□ -1.29
PTPRE-201ENST00000254667 RYR2Q92736 4967 aa6.98□□□□□ -1.29
PTPRE-201ENST00000254667 FAT3Q8TDW7 4589 aa6.98□□□□□ -1.29
PTPRE-201ENST00000254667 KIAA1109Q2LD37 5005 aa6.94□□□□□ -1.3
PTPRE-201ENST00000254667 LRP1Q07954 4544 aaKnown RBP6.91□□□□□ -1.3
PTPRE-201ENST00000254667 HERC1Q15751 4861 aa6.9□□□□□ -1.31
PTPRE-201ENST00000254667 MT1XP80297 61 aa6.86□□□□□ -1.31
PTPRE-201ENST00000254667 MT1BP07438 61 aa6.82□□□□□ -1.32
PTPRE-201ENST00000254667 KRTAP9-8Q9BYQ0 159 aa6.82□□□□□ -1.32
PTPRE-201ENST00000254667 SPRR2EP22531 72 aa6.78□□□□□ -1.32
PTPRE-201ENST00000254667 SPRR2BP35325 72 aa6.78□□□□□ -1.32
PTPRE-201ENST00000254667 SPRR2AP35326 72 aa6.78□□□□□ -1.32
PTPRE-201ENST00000254667 HSPG2P98160 4391 aa6.77□□□□□ -1.33
PTPRE-201ENST00000254667 MYCBP2O75592 4640 aa6.75□□□□□ -1.33
PTPRE-201ENST00000254667 LCE2CQ5TA81 110 aa6.7□□□□□ -1.34
PTPRE-201ENST00000254667 PKD1P98161 4303 aa6.68□□□□□ -1.34
PTPRE-201ENST00000254667 KRTAP9-3Q9BYQ3 159 aa6.68□□□□□ -1.34
PTPRE-201ENST00000254667 HYDINQ4G0P3 5121 aa6.67□□□□□ -1.34
PTPRE-201ENST00000254667 BIRC6Q9NR09 4857 aa6.66□□□□□ -1.34
PTPRE-201ENST00000254667 PKHD1L1Q86WI1 4243 aa6.62□□□□□ -1.35
PTPRE-201ENST00000254667 HERC2O95714 4834 aa6.62□□□□□ -1.35
PTPRE-201ENST00000254667 MT1GP13640 62 aa6.6□□□□□ -1.35
PTPRE-201ENST00000254667 SPRR2DP22532 72 aa6.58□□□□□ -1.36
PTPRE-201ENST00000254667 LCE2BO14633 110 aa6.57□□□□□ -1.36
PTPRE-201ENST00000254667 LCE3BQ5TA77 95 aa6.51□□□□□ -1.37
PTPRE-201ENST00000254667 KRTAP4-8A0A0G2JLE6 195 aa6.5□□□□□ -1.37
PTPRE-201ENST00000254667 KRTAP4-8Q9BYQ9 185 aa6.5□□□□□ -1.37
PTPRE-201ENST00000254667 KRTAP12-4P60329 112 aa6.48□□□□□ -1.37
PTPRE-201ENST00000254667 PCLOQ9Y6V0 5065 aa6.47□□□□□ -1.37
PTPRE-201ENST00000254667 PKHD1P08F94 4074 aa6.47□□□□□ -1.37
PTPRE-201ENST00000254667 SPRR5A0A1B0GTR4 108 aa6.46□□□□□ -1.37
PTPRE-201ENST00000254667 TNXBP22105 4242 aa6.42□□□□□ -1.38
PTPRE-201ENST00000254667 KRTAP19-2Q3LHN2 52 aa6.38□□□□□ -1.39
PTPRE-201ENST00000254667 LRP2P98164 4655 aa6.36□□□□□ -1.39
PTPRE-201ENST00000254667 KRTAP19-3Q7Z4W3 81 aa6.33□□□□□ -1.4
PTPRE-201ENST00000254667 MT1LQ93083 61 aa6.24□□□□□ -1.41
PTPRE-201ENST00000254667 LCE3DQ9BYE3 92 aa6.22□□□□□ -1.41
PTPRE-201ENST00000254667 MT1EP04732 61 aa6.21□□□□□ -1.42
PTPRE-201ENST00000254667 LCE3EQ5T5B0 92 aa6.14□□□□□ -1.43
PTPRE-201ENST00000254667 KRTAP19-6Q3LI70 58 aa6.13□□□□□ -1.43
PTPRE-201ENST00000254667 MUC17Q685J3 4493 aa6.13□□□□□ -1.43
PTPRE-201ENST00000254667 LPAP08519 4548 aa6.1□□□□□ -1.43
PTPRE-201ENST00000254667 EPPK1P58107 5090 aaKnown RBP6.08□□□□□ -1.44
PTPRE-201ENST00000254667 FLGP20930 4061 aaPredicted RBP6.06□□□□□ -1.44
PTPRE-201ENST00000254667 KMT2CQ8NEZ4 4911 aaKnown RBP6.06□□□□□ -1.44
PTPRE-201ENST00000254667 KRTAP4-7Q9BYR0 210 aa6.05□□□□□ -1.44
PTPRE-201ENST00000254667 MT1MQ8N339 61 aa6.01□□□□□ -1.45
PTPRE-201ENST00000254667 ABCA13Q86UQ4 5058 aa6.01□□□□□ -1.45
PTPRE-201ENST00000254667 LCE2DQ5TA82 110 aaPredicted RBP6□□□□□ -1.45
PTPRE-201ENST00000254667 KRTAP9-2Q9BYQ4 174 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms