RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 PMAIP1Q13794 54 aa10.17□□□□□ -0.78
VPS53-215ENST00000573028 FRAS1Q86XX4 4008 aa10.16□□□□□ -0.78
VPS53-215ENST00000573028 Q6ZR54 194 aa10.15□□□□□ -0.78
VPS53-215ENST00000573028 STARD9Q9P2P6 4700 aa10.14□□□□□ -0.79
VPS53-215ENST00000573028 MEGF8Q7Z7M0 2845 aa10.12□□□□□ -0.79
VPS53-215ENST00000573028 DYNC2H1Q8NCM8 4307 aaKnown RBP10.1□□□□□ -0.79
VPS53-215ENST00000573028 HRES1P13985 223 aa10.1□□□□□ -0.79
VPS53-215ENST00000573028 PLAC8Q9NZF1 115 aa10.1□□□□□ -0.79
VPS53-215ENST00000573028 Q5W150 140 aa10.09□□□□□ -0.79
VPS53-215ENST00000573028 DNAH8Q96JB1 4490 aa10.09□□□□□ -0.79
VPS53-215ENST00000573028 RETNLBQ9BQ08 111 aa10.09□□□□□ -0.79
VPS53-215ENST00000573028 LCA10Q71F78 164 aa10.08□□□□□ -0.8
VPS53-215ENST00000573028 KMT2AQ03164 3969 aa10.07□□□□□ -0.8
VPS53-215ENST00000573028 Q75L30 129 aa10.06□□□□□ -0.8
VPS53-215ENST00000573028 FBN3Q75N90 2809 aa10.06□□□□□ -0.8
VPS53-215ENST00000573028 HECTD4Q9Y4D8 3996 aa10.05□□□□□ -0.8
VPS53-215ENST00000573028 LOC101927531A0A1B0GV80 90 aa10.05□□□□□ -0.8
VPS53-215ENST00000573028 IGLV7-43P04211 117 aa10.05□□□□□ -0.8
VPS53-215ENST00000573028 PRR26Q8N8Z3 221 aa10.05□□□□□ -0.8
VPS53-215ENST00000573028 VPS13DQ5THJ4 4388 aa10.02□□□□□ -0.8
VPS53-215ENST00000573028 C1orf134Q5TEV5 83 aa10.02□□□□□ -0.81
VPS53-215ENST00000573028 SEC61GP60059 68 aa10.02□□□□□ -0.81
VPS53-215ENST00000573028 LY6G6CO95867 125 aa10.01□□□□□ -0.81
VPS53-215ENST00000573028 LINC01558Q9Y6Z2 57 aa10□□□□□ -0.81
VPS53-215ENST00000573028 PRKDCP78527 4128 aaKnown RBP9.99□□□□□ -0.81
VPS53-215ENST00000573028 DNAH2Q9P225 4427 aa9.99□□□□□ -0.81
VPS53-215ENST00000573028 DNAH17Q9UFH2 4485 aa9.98□□□□□ -0.81
VPS53-215ENST00000573028 SPINK7P58062 85 aa9.97□□□□□ -0.81
VPS53-215ENST00000573028 ATP11AUNQ6ZP68 121 aa9.94□□□□□ -0.82
VPS53-215ENST00000573028 CDC42SE1Q9NRR8 79 aa9.93□□□□□ -0.82
VPS53-215ENST00000573028 LINC00313P59037 77 aa9.92□□□□□ -0.82
VPS53-215ENST00000573028 KRTAP10-2P60368 255 aa9.91□□□□□ -0.82
VPS53-215ENST00000573028 KRTAP13-3Q3SY46 172 aa9.9□□□□□ -0.82
VPS53-215ENST00000573028 SSBP3-AS1Q7Z2R9 100 aa9.9□□□□□ -0.82
VPS53-215ENST00000573028 ACYP2P14621 99 aa9.89□□□□□ -0.83
VPS53-215ENST00000573028 C8orf87E5RJ46 101 aa9.87□□□□□ -0.83
VPS53-215ENST00000573028 DNAH6Q9C0G6 4158 aa9.86□□□□□ -0.83
VPS53-215ENST00000573028 KTN1-AS1Q86SY8 53 aa9.85□□□□□ -0.83
VPS53-215ENST00000573028 KRTAP13-2Q52LG2 175 aa9.83□□□□□ -0.84
VPS53-215ENST00000573028 FAM229AH3BQW9 127 aa9.82□□□□□ -0.84
VPS53-215ENST00000573028 DNAH11Q96DT5 4516 aa9.82□□□□□ -0.84
VPS53-215ENST00000573028 IGKV2D-30A0A075B6S6 120 aa9.81□□□□□ -0.84
VPS53-215ENST00000573028 A6NN06 94 aa9.81□□□□□ -0.84
VPS53-215ENST00000573028 IGKV2-30P06310 120 aa9.81□□□□□ -0.84
VPS53-215ENST00000573028 C4orf48Q5BLP8 95 aa9.8□□□□□ -0.84
VPS53-215ENST00000573028 ALMS1Q8TCU4 4167 aa9.78□□□□□ -0.84
VPS53-215ENST00000573028 DMAC1Q96GE9 116 aa9.77□□□□□ -0.84
VPS53-215ENST00000573028 KRTAP10-1P60331 282 aa9.76□□□□□ -0.85
VPS53-215ENST00000573028 A0A1B0GU69 56 aa9.74□□□□□ -0.85
VPS53-215ENST00000573028 LRP1BQ9NZR2 4599 aa9.72□□□□□ -0.85
VPS53-215ENST00000573028 DNAH5Q8TE73 4624 aa9.72□□□□□ -0.85
VPS53-215ENST00000573028 RBM12B-AS1Q9P1G2 102 aa9.71□□□□□ -0.86
VPS53-215ENST00000573028 KRTAP16-1A8MUX0 517 aa9.67□□□□□ -0.86
VPS53-215ENST00000573028 PLA2G1BP04054 148 aaKnown RBP9.67□□□□□ -0.86
VPS53-215ENST00000573028 C7orf65Q6ZTY9 151 aa9.67□□□□□ -0.86
VPS53-215ENST00000573028 DNHD1Q96M86 4753 aa9.67□□□□□ -0.86
VPS53-215ENST00000573028 SPINK1P00995 79 aa9.66□□□□□ -0.86
VPS53-215ENST00000573028 KRTAP1-4P0C5Y4 121 aa9.65□□□□□ -0.87
VPS53-215ENST00000573028 TYMSOSQ8TAI1 123 aa9.64□□□□□ -0.87
VPS53-215ENST00000573028 Q6ZSA8 131 aa9.6□□□□□ -0.87
VPS53-215ENST00000573028 Q8N1X5 172 aa9.59□□□□□ -0.87
VPS53-215ENST00000573028 PRAC1Q96KF2 57 aa9.58□□□□□ -0.88
VPS53-215ENST00000573028 VPS13BQ7Z7G8 4022 aa9.55□□□□□ -0.88
VPS53-215ENST00000573028 MIR22HGQ0VDD5 57 aa9.55□□□□□ -0.88
VPS53-215ENST00000573028 HYDINQ4G0P3 5121 aa9.54□□□□□ -0.88
VPS53-215ENST00000573028 ADM2Q7Z4H4 148 aa9.54□□□□□ -0.88
VPS53-215ENST00000573028 UQCR11O14957 56 aa9.53□□□□□ -0.88
VPS53-215ENST00000573028 SPATA8Q6RVD6 105 aa9.49□□□□□ -0.89
VPS53-215ENST00000573028 PKD1P98161 4303 aa9.48□□□□□ -0.89
VPS53-215ENST00000573028 SMR3BP02814 79 aaPredicted RBP9.48□□□□□ -0.89
VPS53-215ENST00000573028 C9orf92A6NGG3 77 aa9.47□□□□□ -0.89
VPS53-215ENST00000573028 LINC00304Q8N9R0 145 aa9.47□□□□□ -0.89
VPS53-215ENST00000573028 FAT2Q9NYQ8 4349 aa9.43□□□□□ -0.9
VPS53-215ENST00000573028 PKHD1P08F94 4074 aa9.36□□□□□ -0.91
VPS53-215ENST00000573028 FAT1Q14517 4588 aa9.26□□□□□ -0.93
VPS53-215ENST00000573028 CSAG1Q6PB30 78 aa9.23□□□□□ -0.93
VPS53-215ENST00000573028 RPS29P62273 56 aaKnown RBP9.2□□□□□ -0.94
VPS53-215ENST00000573028 KRTAP3-1Q9BYR8 98 aa9.2□□□□□ -0.94
VPS53-215ENST00000573028 A8MUU9 505 aa9.19□□□□□ -0.94
VPS53-215ENST00000573028 H0YAA0 97 aa9.18□□□□□ -0.94
VPS53-215ENST00000573028 LINC01554Q52M75 96 aa9.18□□□□□ -0.94
VPS53-215ENST00000573028 DYNC1H1Q14204 4646 aaKnown RBP9.18□□□□□ -0.94
VPS53-215ENST00000573028 C20orf166-AS1Q96NR2 134 aa9.18□□□□□ -0.94
VPS53-215ENST00000573028 LCE2DQ5TA82 110 aaPredicted RBP9.16□□□□□ -0.94
VPS53-215ENST00000573028 A0A1B0GU33 70 aa9.16□□□□□ -0.94
VPS53-215ENST00000573028 FLG2Q5D862 2391 aaPredicted RBP9.15□□□□□ -0.95
VPS53-215ENST00000573028 SACSQ9NZJ4 4579 aa9.14□□□□□ -0.95
VPS53-215ENST00000573028 KRTAP3-3Q9BYR6 98 aa9.13□□□□□ -0.95
VPS53-215ENST00000573028 KRTAP3-2Q9BYR7 98 aa9.13□□□□□ -0.95
VPS53-215ENST00000573028 DMBT1Q9UGM3 2413 aaPredicted RBP9.11□□□□□ -0.95
VPS53-215ENST00000573028 J3QL48 77 aa9.08□□□□□ -0.96
VPS53-215ENST00000573028 H1FX-AS1Q4G0G2 97 aa9.07□□□□□ -0.96
VPS53-215ENST00000573028 KRTAP10-4P60372 401 aaPredicted RBP9.03□□□□□ -0.96
VPS53-215ENST00000573028 COX6B2Q6YFQ2 88 aa9.01□□□□□ -0.97
VPS53-215ENST00000573028 CRIPTQ9P021 101 aa8.99□□□□□ -0.97
VPS53-215ENST00000573028 APOBP04114 4563 aaKnown RBP8.99□□□□□ -0.97
VPS53-215ENST00000573028 A0A1B0GVY2 172 aa8.97□□□□□ -0.97
VPS53-215ENST00000573028 PKHD1L1Q86WI1 4243 aa8.92□□□□□ -0.98
VPS53-215ENST00000573028 LRP1Q07954 4544 aaKnown RBP8.92□□□□□ -0.98
VPS53-215ENST00000573028 K7ERS5 55 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms