RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 NISCHQ9Y2I1 1504 aa34.26■■■■□ 3.07
VPS53-215ENST00000573028 SHROOM4Q9ULL8 1493 aa30.02■■■□□ 2.4
VPS53-215ENST00000573028 SUPT5HO00267 1087 aaKnown RBP29.61■■■□□ 2.33
VPS53-215ENST00000573028 DCAF8L2P0C7V8 631 aa29.11■■■□□ 2.25
VPS53-215ENST00000573028 ZCCHC6Q5VYS8 1495 aaKnown RBP28.97■■■□□ 2.23
VPS53-215ENST00000573028 CCDC180Q9P1Z9 1646 aa28.72■■■□□ 2.19
VPS53-215ENST00000573028 CHIC1Q5VXU3 224 aa28.64■■■□□ 2.17
VPS53-215ENST00000573028 MYO15BQ96JP2 1530 aa28.54■■■□□ 2.16
VPS53-215ENST00000573028 PCGF6Q9BYE7 350 aa28.28■■■□□ 2.12
VPS53-215ENST00000573028 HRCP23327 699 aa28.23■■■□□ 2.11
VPS53-215ENST00000573028 LOC105371045A0A1W2PR82 267 aa28.02■■■□□ 2.08
VPS53-215ENST00000573028 PPARGC1BQ86YN6 1023 aaKnown RBP27.87■■■□□ 2.05
VPS53-215ENST00000573028 DCAF1Q9Y4B6 1507 aa27.83■■■□□ 2.05
VPS53-215ENST00000573028 FAM9AQ8IZU1 332 aaPredicted RBP27.45■■□□□ 1.98
VPS53-215ENST00000573028 TRIM26Q12899 539 aaPredicted RBP27.43■■□□□ 1.98
VPS53-215ENST00000573028 EHMT2Q96KQ7 1210 aa27.43■■□□□ 1.98
VPS53-215ENST00000573028 SCRIBQ14160 1630 aa27.41■■□□□ 1.98
VPS53-215ENST00000573028 TRIM41Q8WV44 630 aa27.4■■□□□ 1.98
VPS53-215ENST00000573028 ABCC9O60706 1549 aa27.37■■□□□ 1.97
VPS53-215ENST00000573028 RSF1Q96T23 1441 aaPredicted RBP27.33■■□□□ 1.97
VPS53-215ENST00000573028 RB1CC1Q8TDY2 1594 aa27.1■■□□□ 1.93
VPS53-215ENST00000573028 CECR2Q9BXF3 1484 aa26.91■■□□□ 1.9
VPS53-215ENST00000573028 ZEB1P37275 1124 aaPredicted RBP26.87■■□□□ 1.89
VPS53-215ENST00000573028 MROH2BQ7Z745 1585 aa26.76■■□□□ 1.87
VPS53-215ENST00000573028 NACADO15069 1562 aa26.63■■□□□ 1.85
VPS53-215ENST00000573028 WIZO95785 1651 aa26.62■■□□□ 1.85
VPS53-215ENST00000573028 TTBK1Q5TCY1 1321 aaPredicted RBP26.57■■□□□ 1.84
VPS53-215ENST00000573028 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.52■■□□□ 1.84
VPS53-215ENST00000573028 CCER1Q8TC90 406 aaPredicted RBP26.44■■□□□ 1.82
VPS53-215ENST00000573028 BAZ1AQ9NRL2 1556 aaPredicted RBP26.3■■□□□ 1.8
VPS53-215ENST00000573028 SCAF1Q9H7N4 1312 aaKnown RBP26.28■■□□□ 1.8
VPS53-215ENST00000573028 ABCC8Q09428 1581 aa26.26■■□□□ 1.79
VPS53-215ENST00000573028 CCDC88BA6NC98 1476 aa26.2■■□□□ 1.78
VPS53-215ENST00000573028 UBTFP17480 764 aaKnown RBP26.16■■□□□ 1.78
VPS53-215ENST00000573028 EIF4G1Q04637 1599 aaKnown RBP26.11■■□□□ 1.77
VPS53-215ENST00000573028 SOGA1O94964 1423 aa26.1■■□□□ 1.77
VPS53-215ENST00000573028 TOP2AP11388 1531 aaKnown RBP26.07■■□□□ 1.76
VPS53-215ENST00000573028 CEP162Q5TB80 1403 aa26.06■■□□□ 1.76
VPS53-215ENST00000573028 PABPN1Q86U42 306 aaKnown RBP eCLIP26.04■■□□□ 1.76
VPS53-215ENST00000573028 CSRNP3Q8WYN3 585 aa26.01■■□□□ 1.75
VPS53-215ENST00000573028 SMARCA4P51532 1647 aa26.01■■□□□ 1.75
VPS53-215ENST00000573028 DIEXFQ68CQ4 756 aaKnown RBP25.99■■□□□ 1.75
VPS53-215ENST00000573028 SMARCA2P51531 1590 aa25.98■■□□□ 1.75
VPS53-215ENST00000573028 RUSC2Q8N2Y8 1516 aa25.96■■□□□ 1.75
VPS53-215ENST00000573028 NEUROD1Q13562 356 aa25.92■■□□□ 1.74
VPS53-215ENST00000573028 TNIKQ9UKE5 1360 aa25.9■■□□□ 1.74
VPS53-215ENST00000573028 WRNQ14191 1432 aaPredicted RBP eCLIP25.89■■□□□ 1.73
VPS53-215ENST00000573028 ACIN1Q9UKV3 1341 aaKnown RBP25.88■■□□□ 1.73
VPS53-215ENST00000573028 RANGAP1P46060 587 aaPredicted RBP25.84■■□□□ 1.73
VPS53-215ENST00000573028 PELP1Q8IZL8 1130 aaKnown RBP25.84■■□□□ 1.73
VPS53-215ENST00000573028 HNRNPUL2Q1KMD3 747 aaKnown RBP25.8■■□□□ 1.72
VPS53-215ENST00000573028 UNC13AQ9UPW8 1703 aa25.75■■□□□ 1.71
VPS53-215ENST00000573028 CENPBP07199 599 aaPredicted RBP25.74■■□□□ 1.71
VPS53-215ENST00000573028 EEA1Q15075 1411 aa25.74■■□□□ 1.71
VPS53-215ENST00000573028 GTF3C3Q9Y5Q9 886 aa25.73■■□□□ 1.71
VPS53-215ENST00000573028 GOLGA3Q08378 1498 aa25.71■■□□□ 1.71
VPS53-215ENST00000573028 YTHDC1Q96MU7 727 aaKnown RBP25.66■■□□□ 1.7
VPS53-215ENST00000573028 ZNF316A6NFI3 1004 aaPredicted RBP25.64■■□□□ 1.7
VPS53-215ENST00000573028 APLP2Q06481 763 aa25.61■■□□□ 1.69
VPS53-215ENST00000573028 CLIP1P30622 1438 aa25.55■■□□□ 1.68
VPS53-215ENST00000573028 CEP164Q9UPV0 1460 aa25.51■■□□□ 1.68
VPS53-215ENST00000573028 SYNJ1O43426 1573 aa25.5■■□□□ 1.67
VPS53-215ENST00000573028 BICRAQ9NZM4 1560 aa25.48■■□□□ 1.67
VPS53-215ENST00000573028 MIER1Q8N108 512 aa25.41■■□□□ 1.66
VPS53-215ENST00000573028 RAPGEF2Q9Y4G8 1499 aa25.4■■□□□ 1.66
VPS53-215ENST00000573028 BAZ1BQ9UIG0 1483 aaKnown RBP25.37■■□□□ 1.65
VPS53-215ENST00000573028 VPS8Q8N3P4 1428 aa25.37■■□□□ 1.65
VPS53-215ENST00000573028 ATAD2BQ9ULI0 1458 aa25.36■■□□□ 1.65
VPS53-215ENST00000573028 KIF21BO75037 1637 aa25.32■■□□□ 1.64
VPS53-215ENST00000573028 PEG3Q9GZU2 1588 aa25.29■■□□□ 1.64
VPS53-215ENST00000573028 KANK4Q5T7N3 995 aaPredicted RBP25.14■■□□□ 1.61
VPS53-215ENST00000573028 ITGAEP38570 1179 aa25.12■■□□□ 1.61
VPS53-215ENST00000573028 TOP2BQ02880 1626 aa25.04■■□□□ 1.6
VPS53-215ENST00000573028 DHX57Q6P158 1386 aaKnown RBP24.99■■□□□ 1.59
VPS53-215ENST00000573028 ARAP1Q96P48 1450 aa24.97■■□□□ 1.59
VPS53-215ENST00000573028 PRXQ9BXM0 1461 aa24.95■■□□□ 1.58
VPS53-215ENST00000573028 KIF27Q86VH2 1401 aa24.89■■□□□ 1.57
VPS53-215ENST00000573028 ERICH3Q5RHP9 1530 aa24.87■■□□□ 1.57
VPS53-215ENST00000573028 BIVM-ERCC5R4GMW8 1640 aa24.86■■□□□ 1.57
VPS53-215ENST00000573028 CLSPNQ9HAW4 1339 aa24.86■■□□□ 1.57
VPS53-215ENST00000573028 CUX1P39880 1505 aa24.86■■□□□ 1.57
VPS53-215ENST00000573028 CCNB3Q8WWL7 1395 aa24.79■■□□□ 1.56
VPS53-215ENST00000573028 ATP1B4Q9UN42 357 aaPredicted RBP24.79■■□□□ 1.56
VPS53-215ENST00000573028 ARHGAP35Q9NRY4 1499 aa24.74■■□□□ 1.55
VPS53-215ENST00000573028 RRBP1Q9P2E9 1410 aaKnown RBP24.74■■□□□ 1.55
VPS53-215ENST00000573028 P3H3Q8IVL6 736 aa24.73■■□□□ 1.55
VPS53-215ENST00000573028 NCAPD3P42695 1498 aa24.72■■□□□ 1.55
VPS53-215ENST00000573028 FAM50AQ14320 339 aaKnown RBP24.69■■□□□ 1.54
VPS53-215ENST00000573028 CUX2O14529 1486 aa24.67■■□□□ 1.54
VPS53-215ENST00000573028 RAB3GAP2Q9H2M9 1393 aa24.65■■□□□ 1.54
VPS53-215ENST00000573028 CFTRP13569 1480 aa24.64■■□□□ 1.54
VPS53-215ENST00000573028 HMGXB3Q12766 1538 aa24.64■■□□□ 1.53
VPS53-215ENST00000573028 KCNH8Q96L42 1107 aa24.63■■□□□ 1.53
VPS53-215ENST00000573028 SUPT16HQ9Y5B9 1047 aaKnown RBP24.62■■□□□ 1.53
VPS53-215ENST00000573028 IGF1RP08069 1367 aa24.6■■□□□ 1.53
VPS53-215ENST00000573028 SIN3AQ96ST3 1273 aa24.59■■□□□ 1.53
VPS53-215ENST00000573028 CARMIL1Q5VZK9 1371 aa24.56■■□□□ 1.52
VPS53-215ENST00000573028 DDX10Q13206 875 aaKnown RBP24.53■■□□□ 1.52
VPS53-215ENST00000573028 HIRIP3Q9BW71 556 aaPredicted RBP24.52■■□□□ 1.52
VPS53-215ENST00000573028 MYT1Q01538 1121 aa24.5■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms