RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 WNK2Q9Y3S1 2297 aa1.14□□□□□ -2.23
TRAV28-201ENST00000557548 MAP1AP78559 2803 aaPredicted RBP1.14□□□□□ -2.23
TRAV28-201ENST00000557548 SORL1Q92673 2214 aa1.14□□□□□ -2.23
TRAV28-201ENST00000557548 CPSF4LA6NMK7 179 aaKnown RBP1.14□□□□□ -2.23
TRAV28-201ENST00000557548 DEFB106AQ8N104 65 aa1.14□□□□□ -2.23
TRAV28-201ENST00000557548 ANKHD1Q8IWZ3 2542 aaKnown RBP1.14□□□□□ -2.23
TRAV28-201ENST00000557548 SONP18583 2426 aaKnown RBP1.14□□□□□ -2.23
TRAV28-201ENST00000557548 K7EMI3 77 aa1.13□□□□□ -2.23
TRAV28-201ENST00000557548 MRPL33O75394 65 aaKnown RBP1.13□□□□□ -2.23
TRAV28-201ENST00000557548 ANGP03950 147 aaKnown RBP1.13□□□□□ -2.23
TRAV28-201ENST00000557548 PLNP26678 52 aa1.13□□□□□ -2.23
TRAV28-201ENST00000557548 SMR3AQ99954 134 aa1.13□□□□□ -2.23
TRAV28-201ENST00000557548 KCNQ1DNQ9H478 68 aa1.13□□□□□ -2.23
TRAV28-201ENST00000557548 MTORP42345 2549 aa1.13□□□□□ -2.23
TRAV28-201ENST00000557548 STAB1Q9NY15 2570 aa1.12□□□□□ -2.23
TRAV28-201ENST00000557548 NIPBLQ6KC79 2804 aaeCLIP1.12□□□□□ -2.23
TRAV28-201ENST00000557548 FBN3Q75N90 2809 aa1.12□□□□□ -2.23
TRAV28-201ENST00000557548 ARL14EPLP0DKL9 152 aa1.12□□□□□ -2.23
TRAV28-201ENST00000557548 DEFB109BQ30KR1 87 aa1.12□□□□□ -2.23
TRAV28-201ENST00000557548 COX14Q96I36 57 aa1.12□□□□□ -2.23
TRAV28-201ENST00000557548 CSPG4Q6UVK1 2322 aa1.12□□□□□ -2.23
TRAV28-201ENST00000557548 TENM1Q9UKZ4 2725 aa1.11□□□□□ -2.23
TRAV28-201ENST00000557548 TNCP24821 2201 aa1.11□□□□□ -2.23
TRAV28-201ENST00000557548 NBEAL1Q6ZS30 2694 aa1.11□□□□□ -2.23
TRAV28-201ENST00000557548 MXRA5Q9NR99 2828 aa1.11□□□□□ -2.23
TRAV28-201ENST00000557548 ETDCA0A1B0GVM5 59 aa1.11□□□□□ -2.23
TRAV28-201ENST00000557548 M0R1W7 72 aa1.11□□□□□ -2.23
TRAV28-201ENST00000557548 CCL22O00626 93 aa1.11□□□□□ -2.23
TRAV28-201ENST00000557548 KRTAP4-1Q9BYQ7 146 aa1.11□□□□□ -2.23
TRAV28-201ENST00000557548 ABRACLQ9P1F3 81 aa1.11□□□□□ -2.23
TRAV28-201ENST00000557548 MGAM2Q2M2H8 2515 aa1.11□□□□□ -2.23
TRAV28-201ENST00000557548 WNK1Q9H4A3 2382 aa1.1□□□□□ -2.23
TRAV28-201ENST00000557548 K7EIL1 84 aa1.1□□□□□ -2.23
TRAV28-201ENST00000557548 TFF3Q07654 80 aa1.1□□□□□ -2.23
TRAV28-201ENST00000557548 DEFB110Q30KQ9 67 aa1.1□□□□□ -2.23
TRAV28-201ENST00000557548 KRTAP21-3Q3LHN1 58 aa1.1□□□□□ -2.23
TRAV28-201ENST00000557548 USMG5Q96IX5 58 aa1.1□□□□□ -2.23
TRAV28-201ENST00000557548 CRIPTQ9P021 101 aa1.1□□□□□ -2.23
TRAV28-201ENST00000557548 COL6A5A8TX70 2615 aa1.1□□□□□ -2.23
TRAV28-201ENST00000557548 PKD1L1Q8TDX9 2849 aa1.1□□□□□ -2.23
TRAV28-201ENST00000557548 TGP01266 2768 aa1.09□□□□□ -2.23
TRAV28-201ENST00000557548 JMJD1CQ15652 2540 aa1.09□□□□□ -2.23
TRAV28-201ENST00000557548 IGIPA6NJ69 53 aa1.09□□□□□ -2.23
TRAV28-201ENST00000557548 I3L3M4 83 aa1.09□□□□□ -2.23
TRAV28-201ENST00000557548 STATHP02808 62 aa1.09□□□□□ -2.23
TRAV28-201ENST00000557548 PIGYQ3MUY2 71 aa1.09□□□□□ -2.23
TRAV28-201ENST00000557548 TP53AIP1Q9HCN2 124 aa1.09□□□□□ -2.23
TRAV28-201ENST00000557548 CRCT1Q9UGL9 99 aa1.09□□□□□ -2.23
TRAV28-201ENST00000557548 DNHD1Q96M86 4753 aa1.08□□□□□ -2.24
TRAV28-201ENST00000557548 COL7A1Q02388 2944 aa1.08□□□□□ -2.24
TRAV28-201ENST00000557548 DEFB131BA0A096LNP1 70 aa1.08□□□□□ -2.24
TRAV28-201ENST00000557548 SMIM27A0A1W2PRY6 76 aa1.08□□□□□ -2.24
TRAV28-201ENST00000557548 FLG2Q5D862 2391 aaPredicted RBP1.08□□□□□ -2.24
TRAV28-201ENST00000557548 ATRQ13535 2644 aa1.08□□□□□ -2.24
TRAV28-201ENST00000557548 CSMD3Q7Z407 3707 aa1.07□□□□□ -2.24
TRAV28-201ENST00000557548 ANK3Q12955 4377 aaKnown RBP1.06□□□□□ -2.24
TRAV28-201ENST00000557548 VWFP04275 2813 aa1.06□□□□□ -2.24
TRAV28-201ENST00000557548 I3L2K1 104 aa1.06□□□□□ -2.24
TRAV28-201ENST00000557548 COX6B1P14854 86 aa1.06□□□□□ -2.24
TRAV28-201ENST00000557548 CNFNQ9BYD5 112 aa1.06□□□□□ -2.24
TRAV28-201ENST00000557548 DEFB108AA8MXU0 73 aa1.05□□□□□ -2.24
TRAV28-201ENST00000557548 H0YGG7 62 aa1.05□□□□□ -2.24
TRAV28-201ENST00000557548 H0YGX0 51 aa1.05□□□□□ -2.24
TRAV28-201ENST00000557548 K7EQZ3 153 aa1.05□□□□□ -2.24
TRAV28-201ENST00000557548 COX6B2Q6YFQ2 88 aa1.05□□□□□ -2.24
TRAV28-201ENST00000557548 MRPL34Q9BQ48 92 aaKnown RBP1.05□□□□□ -2.24
TRAV28-201ENST00000557548 MEGF8Q7Z7M0 2845 aa1.05□□□□□ -2.24
TRAV28-201ENST00000557548 TRRAPQ9Y4A5 3859 aa1.05□□□□□ -2.24
TRAV28-201ENST00000557548 LINC01546A6NGU7 62 aa1.04□□□□□ -2.24
TRAV28-201ENST00000557548 SPINK9Q5DT21 86 aa1.04□□□□□ -2.24
TRAV28-201ENST00000557548 PRO0255Q9UI72 69 aa1.04□□□□□ -2.24
TRAV28-201ENST00000557548 PRKDCP78527 4128 aaKnown RBP1.04□□□□□ -2.24
TRAV28-201ENST00000557548 NOTCH1P46531 2555 aa1.03□□□□□ -2.24
TRAV28-201ENST00000557548 KRTAP10-4P60372 401 aaPredicted RBP1.03□□□□□ -2.24
TRAV28-201ENST00000557548 TENM3Q9P273 2699 aa1.03□□□□□ -2.24
TRAV28-201ENST00000557548 CMYA5Q8N3K9 4069 aa1.03□□□□□ -2.24
TRAV28-201ENST00000557548 CRIP1P50238 77 aa1.02□□□□□ -2.25
TRAV28-201ENST00000557548 COX6A2Q02221 97 aa1.02□□□□□ -2.25
TRAV28-201ENST00000557548 RPS27LQ71UM5 84 aaKnown RBP1.02□□□□□ -2.25
TRAV28-201ENST00000557548 Q8IZM0 81 aa1.02□□□□□ -2.25
TRAV28-201ENST00000557548 TMEM167BQ9NRX6 74 aa1.02□□□□□ -2.25
TRAV28-201ENST00000557548 CDKN2A-AS1Q9UH64 79 aa1.02□□□□□ -2.25
TRAV28-201ENST00000557548 TIMM8BQ9Y5J9 83 aaPredicted RBP1.02□□□□□ -2.25
TRAV28-201ENST00000557548 ANK2Q01484 3957 aa1.02□□□□□ -2.25
TRAV28-201ENST00000557548 NBEAL2Q6ZNJ1 2754 aa1.01□□□□□ -2.25
TRAV28-201ENST00000557548 LINC00158P58513 81 aa1.01□□□□□ -2.25
TRAV28-201ENST00000557548 C10orf95Q9H7T3 257 aa1.01□□□□□ -2.25
TRAV28-201ENST00000557548 KMT2CQ8NEZ4 4911 aaKnown RBP1.01□□□□□ -2.25
TRAV28-201ENST00000557548 RYR3Q15413 4870 aa1.01□□□□□ -2.25
TRAV28-201ENST00000557548 EPPK1P58107 5090 aaKnown RBP1□□□□□ -2.25
TRAV28-201ENST00000557548 TENM2Q9NT68 2774 aa1□□□□□ -2.25
TRAV28-201ENST00000557548 HYDINQ4G0P3 5121 aa1□□□□□ -2.25
TRAV28-201ENST00000557548 LYNX1G3V0Z9 82 aa1□□□□□ -2.25
TRAV28-201ENST00000557548 SPINK4O60575 86 aa1□□□□□ -2.25
TRAV28-201ENST00000557548 FCGBPQ9Y6R7 5405 aaPredicted RBP1□□□□□ -2.25
TRAV28-201ENST00000557548 NDUFA3O95167 84 aa0.99□□□□□ -2.25
TRAV28-201ENST00000557548 LYSTQ99698 3801 aa0.99□□□□□ -2.25
TRAV28-201ENST00000557548 DNAH3Q8TD57 4116 aa0.97□□□□□ -2.25
TRAV28-201ENST00000557548 FRAS1Q86XX4 4008 aa0.97□□□□□ -2.25
TRAV28-201ENST00000557548 DNAH7Q8WXX0 4024 aa0.97□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 302.4 ms