RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 AEBP2Q6ZN18 517 aaPredicted RBP16.47■□□□□ 0.23
TRAV28-201ENST00000557548 CHIC1Q5VXU3 224 aa15.47■□□□□ 0.07
TRAV28-201ENST00000557548 POTEDQ86YR6 584 aa14.49□□□□□ -0.09
TRAV28-201ENST00000557548 SENP3Q9H4L4 574 aaPredicted RBP14.31□□□□□ -0.12
TRAV28-201ENST00000557548 PHF23Q9BUL5 403 aaPredicted RBP13.93□□□□□ -0.18
TRAV28-201ENST00000557548 FOXD1Q16676 465 aa13.4□□□□□ -0.26
TRAV28-201ENST00000557548 MSH5O43196 834 aa13.04□□□□□ -0.32
TRAV28-201ENST00000557548 PIAS4Q8N2W9 510 aaPredicted RBP12.28□□□□□ -0.44
TRAV28-201ENST00000557548 CACNB1Q02641 598 aaPredicted RBP11.82□□□□□ -0.52
TRAV28-201ENST00000557548 PPP6R1Q9UPN7 881 aa11.67□□□□□ -0.54
TRAV28-201ENST00000557548 ADRA2BP18089 450 aa11.58□□□□□ -0.56
TRAV28-201ENST00000557548 PLPPR3Q6T4P5 718 aa11.25□□□□□ -0.61
TRAV28-201ENST00000557548 POTEHQ6S545 545 aa11.16□□□□□ -0.62
TRAV28-201ENST00000557548 DMRT2Q9Y5R5 561 aa11.16□□□□□ -0.62
TRAV28-201ENST00000557548 RNF39Q9H2S5 420 aa10.98□□□□□ -0.65
TRAV28-201ENST00000557548 MAPK8IP2Q13387 824 aaPredicted RBP10.95□□□□□ -0.66
TRAV28-201ENST00000557548 C1QBPQ07021 282 aaKnown RBP10.8□□□□□ -0.68
TRAV28-201ENST00000557548 DCAF8L1A6NGE4 600 aa10.74□□□□□ -0.69
TRAV28-201ENST00000557548 SCAF1Q9H7N4 1312 aaKnown RBP10.72□□□□□ -0.69
TRAV28-201ENST00000557548 HOXD11P31277 338 aaPredicted RBP10.33□□□□□ -0.76
TRAV28-201ENST00000557548 DNAJC5BQ9UF47 199 aa10.25□□□□□ -0.77
TRAV28-201ENST00000557548 RNF216Q9NWF9 866 aaPredicted RBP9.97□□□□□ -0.81
TRAV28-201ENST00000557548 SP7Q8TDD2 431 aaPredicted RBP9.96□□□□□ -0.82
TRAV28-201ENST00000557548 DSG3P32926 999 aa9.91□□□□□ -0.82
TRAV28-201ENST00000557548 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.85□□□□□ -0.83
TRAV28-201ENST00000557548 CNKSR2Q8WXI2 1034 aa9.79□□□□□ -0.84
TRAV28-201ENST00000557548 CAPN15O75808 1086 aa9.73□□□□□ -0.85
TRAV28-201ENST00000557548 CHRDL2Q6WN34 429 aa9.72□□□□□ -0.85
TRAV28-201ENST00000557548 PPP4R3CPQ6ZMV5 832 aa9.68□□□□□ -0.86
TRAV28-201ENST00000557548 SPINK5Q9NQ38 1064 aaPredicted RBP9.65□□□□□ -0.86
TRAV28-201ENST00000557548 PLSCR2Q9NRY7 297 aa9.64□□□□□ -0.87
TRAV28-201ENST00000557548 RBM42Q9BTD8 480 aaKnown RBP9.56□□□□□ -0.88
TRAV28-201ENST00000557548 U3KPZ7 1027 aaPredicted RBP9.48□□□□□ -0.89
TRAV28-201ENST00000557548 HAX1O00165 279 aa9.39□□□□□ -0.91
TRAV28-201ENST00000557548 ABCB7O75027 752 aa9.37□□□□□ -0.91
TRAV28-201ENST00000557548 LHX8Q68G74 356 aa9.33□□□□□ -0.92
TRAV28-201ENST00000557548 TRHP20396 242 aaPredicted RBP9.3□□□□□ -0.92
TRAV28-201ENST00000557548 ZNF219Q9P2Y4 722 aaPredicted RBP9.29□□□□□ -0.92
TRAV28-201ENST00000557548 PIP4P2Q8N4L2 257 aa9.24□□□□□ -0.93
TRAV28-201ENST00000557548 APLP2Q06481 763 aa9.22□□□□□ -0.93
TRAV28-201ENST00000557548 EVX2Q03828 476 aa9.12□□□□□ -0.95
TRAV28-201ENST00000557548 AKT1S1Q96B36 256 aa9.08□□□□□ -0.96
TRAV28-201ENST00000557548 NCBP3Q53F19 620 aaKnown RBP9.05□□□□□ -0.96
TRAV28-201ENST00000557548 FXR2P51116 673 aaKnown RBP eCLIP9.03□□□□□ -0.96
TRAV28-201ENST00000557548 REM2Q8IYK8 340 aaPredicted RBP8.96□□□□□ -0.98
TRAV28-201ENST00000557548 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.93□□□□□ -0.98
TRAV28-201ENST00000557548 HNRNPUL2Q1KMD3 747 aaKnown RBP8.93□□□□□ -0.98
TRAV28-201ENST00000557548 GABBR2O75899 941 aa8.91□□□□□ -0.98
TRAV28-201ENST00000557548 PITPNM1O00562 1244 aa8.87□□□□□ -0.99
TRAV28-201ENST00000557548 POTEMA6NI47 508 aa8.84□□□□□ -0.99
TRAV28-201ENST00000557548 NPM3O75607 178 aaKnown RBP8.84□□□□□ -0.99
TRAV28-201ENST00000557548 PCDH10Q9P2E7 1040 aa8.83□□□□□ -1
TRAV28-201ENST00000557548 KCNA4P22459 653 aa8.81□□□□□ -1
TRAV28-201ENST00000557548 POLA2Q14181 598 aa8.81□□□□□ -1
TRAV28-201ENST00000557548 SAMD1Q6SPF0 538 aaPredicted RBP8.81□□□□□ -1
TRAV28-201ENST00000557548 EHMT2Q96KQ7 1210 aa8.79□□□□□ -1
TRAV28-201ENST00000557548 C19orf67A6NJJ6 358 aa8.78□□□□□ -1
TRAV28-201ENST00000557548 POTEGQ6S5H5 508 aa8.77□□□□□ -1.01
TRAV28-201ENST00000557548 SLC4A2P04920 1241 aa8.71□□□□□ -1.02
TRAV28-201ENST00000557548 POTEIP0CG38 1075 aa8.68□□□□□ -1.02
TRAV28-201ENST00000557548 PRKAR2AP13861 404 aaKnown RBP8.64□□□□□ -1.03
TRAV28-201ENST00000557548 ZBTB12Q9Y330 459 aaPredicted RBP8.62□□□□□ -1.03
TRAV28-201ENST00000557548 OTUD5Q96G74 571 aa8.58□□□□□ -1.04
TRAV28-201ENST00000557548 OSCARQ8IYS5 282 aa8.55□□□□□ -1.04
TRAV28-201ENST00000557548 CLCN6P51797 869 aa8.5□□□□□ -1.05
TRAV28-201ENST00000557548 DCBLD2Q96PD2 775 aa8.48□□□□□ -1.05
TRAV28-201ENST00000557548 SLC4A1APQ9BWU0 796 aaKnown RBP8.46□□□□□ -1.06
TRAV28-201ENST00000557548 CSRNP3Q8WYN3 585 aa8.43□□□□□ -1.06
TRAV28-201ENST00000557548 POTEB2H3BUK9 544 aa8.36□□□□□ -1.07
TRAV28-201ENST00000557548 SPDYE1Q8NFV5 336 aaPredicted RBP8.36□□□□□ -1.07
TRAV28-201ENST00000557548 CLEC11AQ9Y240 323 aa8.36□□□□□ -1.07
TRAV28-201ENST00000557548 CD44P16070 742 aaKnown RBP8.31□□□□□ -1.08
TRAV28-201ENST00000557548 LCE2DQ5TA82 110 aaPredicted RBP8.29□□□□□ -1.08
TRAV28-201ENST00000557548 CHADLQ6NUI6 762 aa8.27□□□□□ -1.09
TRAV28-201ENST00000557548 MYCNP04198 464 aaPredicted RBP8.25□□□□□ -1.09
TRAV28-201ENST00000557548 FAM163AQ96GL9 167 aaPredicted RBP8.25□□□□□ -1.09
TRAV28-201ENST00000557548 SPDYE2BA6NHP3 402 aa8.23□□□□□ -1.09
TRAV28-201ENST00000557548 SPDYE6P0CI01 402 aa8.23□□□□□ -1.09
TRAV28-201ENST00000557548 SPDYE2Q495Y8 402 aa8.23□□□□□ -1.09
TRAV28-201ENST00000557548 CDAN1Q8IWY9 1227 aa8.21□□□□□ -1.1
TRAV28-201ENST00000557548 MAMSTRQ6ZN01 415 aa8.17□□□□□ -1.1
TRAV28-201ENST00000557548 ZNF579Q8NAF0 562 aaKnown RBP8.14□□□□□ -1.11
TRAV28-201ENST00000557548 ZBTB22O15209 634 aa8.13□□□□□ -1.11
TRAV28-201ENST00000557548 MMRN1Q13201 1228 aa8.13□□□□□ -1.11
TRAV28-201ENST00000557548 PRR29P0C7W0 189 aa8.09□□□□□ -1.11
TRAV28-201ENST00000557548 FARP1Q9Y4F1 1045 aaPredicted RBP8.09□□□□□ -1.11
TRAV28-201ENST00000557548 GALR2O43603 387 aaPredicted RBP8.08□□□□□ -1.12
TRAV28-201ENST00000557548 ATF5Q9Y2D1 282 aaPredicted RBP8.06□□□□□ -1.12
TRAV28-201ENST00000557548 POTEJP0CG39 1038 aa8.05□□□□□ -1.12
TRAV28-201ENST00000557548 SCUBE2Q9NQ36 999 aa8.04□□□□□ -1.12
TRAV28-201ENST00000557548 SPNS2Q8IVW8 549 aa8.03□□□□□ -1.12
TRAV28-201ENST00000557548 ZRANB1Q9UGI0 708 aa8.02□□□□□ -1.13
TRAV28-201ENST00000557548 PELP1Q8IZL8 1130 aaKnown RBP8□□□□□ -1.13
TRAV28-201ENST00000557548 METRNQ9UJH8 293 aa8□□□□□ -1.13
TRAV28-201ENST00000557548 C7P10643 843 aa7.97□□□□□ -1.13
TRAV28-201ENST00000557548 SLC39A7Q92504 469 aa7.97□□□□□ -1.13
TRAV28-201ENST00000557548 SSUH2Q9Y2M2 353 aa7.97□□□□□ -1.13
TRAV28-201ENST00000557548 FOXD4L1Q9NU39 408 aa7.95□□□□□ -1.14
TRAV28-201ENST00000557548 ZNF692Q9BU19 519 aaPredicted RBP7.94□□□□□ -1.14
TRAV28-201ENST00000557548 FBLN2P98095 1184 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 136.1 ms