RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 COA5Q86WW8 74 aa11.55□□□□□ -0.56
PCF11-203ENST00000530304 Q5VV11 94 aa11.54□□□□□ -0.56
PCF11-203ENST00000530304 FBN3Q75N90 2809 aa11.53□□□□□ -0.56
PCF11-203ENST00000530304 LIMD2Q9BT23 127 aa11.53□□□□□ -0.56
PCF11-203ENST00000530304 IGLV7-43P04211 117 aa11.49□□□□□ -0.57
PCF11-203ENST00000530304 SPINK6Q6UWN8 80 aa11.48□□□□□ -0.57
PCF11-203ENST00000530304 C1orf134Q5TEV5 83 aa11.47□□□□□ -0.57
PCF11-203ENST00000530304 PRR15LQ9BU68 103 aa11.46□□□□□ -0.57
PCF11-203ENST00000530304 CIRBP-AS1Q8TBR5 109 aa11.45□□□□□ -0.58
PCF11-203ENST00000530304 A8MU10 97 aa11.45□□□□□ -0.58
PCF11-203ENST00000530304 PMAIP1Q13794 54 aa11.44□□□□□ -0.58
PCF11-203ENST00000530304 TGP01266 2768 aa11.44□□□□□ -0.58
PCF11-203ENST00000530304 SEC61GP60059 68 aa11.44□□□□□ -0.58
PCF11-203ENST00000530304 CHKB-CPT1BH3BT56 60 aa11.43□□□□□ -0.58
PCF11-203ENST00000530304 ALMS1Q8TCU4 4167 aa11.43□□□□□ -0.58
PCF11-203ENST00000530304 MEGF8Q7Z7M0 2845 aa11.43□□□□□ -0.58
PCF11-203ENST00000530304 DNAH6Q9C0G6 4158 aa11.4□□□□□ -0.59
PCF11-203ENST00000530304 Q5W150 140 aa11.39□□□□□ -0.59
PCF11-203ENST00000530304 LOC101927531A0A1B0GV80 90 aa11.38□□□□□ -0.59
PCF11-203ENST00000530304 HRES1P13985 223 aa11.37□□□□□ -0.59
PCF11-203ENST00000530304 DNAH11Q96DT5 4516 aa11.36□□□□□ -0.59
PCF11-203ENST00000530304 SSBP3-AS1Q7Z2R9 100 aa11.36□□□□□ -0.59
PCF11-203ENST00000530304 LY6G6CO95867 125 aa11.36□□□□□ -0.59
PCF11-203ENST00000530304 KRTAP13-3Q3SY46 172 aa11.35□□□□□ -0.59
PCF11-203ENST00000530304 Q75L30 129 aa11.35□□□□□ -0.59
PCF11-203ENST00000530304 SPAG11AQ6PDA7 123 aa11.35□□□□□ -0.59
PCF11-203ENST00000530304 DNAH5Q8TE73 4624 aa11.32□□□□□ -0.6
PCF11-203ENST00000530304 LINC01558Q9Y6Z2 57 aa11.31□□□□□ -0.6
PCF11-203ENST00000530304 KRTAP10-2P60368 255 aa11.3□□□□□ -0.6
PCF11-203ENST00000530304 C8orf87E5RJ46 101 aa11.29□□□□□ -0.6
PCF11-203ENST00000530304 A6NED7 52 aa11.27□□□□□ -0.6
PCF11-203ENST00000530304 LCA10Q71F78 164 aa11.26□□□□□ -0.61
PCF11-203ENST00000530304 LINC00313P59037 77 aa11.24□□□□□ -0.61
PCF11-203ENST00000530304 KRTAP13-2Q52LG2 175 aa11.22□□□□□ -0.61
PCF11-203ENST00000530304 SPTSSBQ8NFR3 76 aa11.22□□□□□ -0.61
PCF11-203ENST00000530304 PRR26Q8N8Z3 221 aa11.19□□□□□ -0.62
PCF11-203ENST00000530304 DNHD1Q96M86 4753 aa11.18□□□□□ -0.62
PCF11-203ENST00000530304 LRP1BQ9NZR2 4599 aa11.17□□□□□ -0.62
PCF11-203ENST00000530304 ACYP2P14621 99 aa11.17□□□□□ -0.62
PCF11-203ENST00000530304 FAM229AH3BQW9 127 aa11.16□□□□□ -0.62
PCF11-203ENST00000530304 RETNLBQ9BQ08 111 aa11.16□□□□□ -0.62
PCF11-203ENST00000530304 Q6ZSA8 131 aa11.16□□□□□ -0.62
PCF11-203ENST00000530304 KRTAP10-1P60331 282 aa11.15□□□□□ -0.62
PCF11-203ENST00000530304 CDC42SE1Q9NRR8 79 aa11.15□□□□□ -0.62
PCF11-203ENST00000530304 PKD1P98161 4303 aa11.15□□□□□ -0.62
PCF11-203ENST00000530304 ATP11AUNQ6ZP68 121 aa11.15□□□□□ -0.62
PCF11-203ENST00000530304 SPINK7P58062 85 aa11.11□□□□□ -0.63
PCF11-203ENST00000530304 DMAC1Q96GE9 116 aa11.11□□□□□ -0.63
PCF11-203ENST00000530304 KTN1-AS1Q86SY8 53 aa11.09□□□□□ -0.63
PCF11-203ENST00000530304 KRTAP16-1A8MUX0 517 aa11.09□□□□□ -0.63
PCF11-203ENST00000530304 IGKV2-30P06310 120 aa11.09□□□□□ -0.63
PCF11-203ENST00000530304 KRTAP1-4P0C5Y4 121 aa11.08□□□□□ -0.64
PCF11-203ENST00000530304 FAT2Q9NYQ8 4349 aa11.08□□□□□ -0.64
PCF11-203ENST00000530304 HYDINQ4G0P3 5121 aa11.07□□□□□ -0.64
PCF11-203ENST00000530304 VPS13BQ7Z7G8 4022 aa11.06□□□□□ -0.64
PCF11-203ENST00000530304 A6NN06 94 aa11.03□□□□□ -0.64
PCF11-203ENST00000530304 PLA2G1BP04054 148 aaKnown RBP10.98□□□□□ -0.65
PCF11-203ENST00000530304 C4orf48Q5BLP8 95 aa10.97□□□□□ -0.65
PCF11-203ENST00000530304 IGKV2D-30A0A075B6S6 120 aa10.95□□□□□ -0.66
PCF11-203ENST00000530304 RBM12B-AS1Q9P1G2 102 aa10.95□□□□□ -0.66
PCF11-203ENST00000530304 TYMSOSQ8TAI1 123 aa10.95□□□□□ -0.66
PCF11-203ENST00000530304 SPINK1P00995 79 aa10.91□□□□□ -0.66
PCF11-203ENST00000530304 A0A1B0GU69 56 aa10.89□□□□□ -0.67
PCF11-203ENST00000530304 C7orf65Q6ZTY9 151 aa10.86□□□□□ -0.67
PCF11-203ENST00000530304 PKHD1P08F94 4074 aa10.8□□□□□ -0.68
PCF11-203ENST00000530304 LINC00304Q8N9R0 145 aa10.78□□□□□ -0.68
PCF11-203ENST00000530304 RPS29P62273 56 aaKnown RBP10.74□□□□□ -0.69
PCF11-203ENST00000530304 SPATA8Q6RVD6 105 aa10.73□□□□□ -0.69
PCF11-203ENST00000530304 UQCR11O14957 56 aa10.7□□□□□ -0.7
PCF11-203ENST00000530304 Q8N1X5 172 aa10.7□□□□□ -0.7
PCF11-203ENST00000530304 SACSQ9NZJ4 4579 aa10.69□□□□□ -0.7
PCF11-203ENST00000530304 MIR22HGQ0VDD5 57 aa10.68□□□□□ -0.7
PCF11-203ENST00000530304 SMR3BP02814 79 aaPredicted RBP10.68□□□□□ -0.7
PCF11-203ENST00000530304 PRAC1Q96KF2 57 aa10.62□□□□□ -0.71
PCF11-203ENST00000530304 C9orf92A6NGG3 77 aa10.61□□□□□ -0.71
PCF11-203ENST00000530304 DYNC1H1Q14204 4646 aaKnown RBP10.6□□□□□ -0.71
PCF11-203ENST00000530304 ADM2Q7Z4H4 148 aa10.57□□□□□ -0.72
PCF11-203ENST00000530304 C20orf166-AS1Q96NR2 134 aa10.57□□□□□ -0.72
PCF11-203ENST00000530304 A8MUU9 505 aa10.56□□□□□ -0.72
PCF11-203ENST00000530304 PKHD1L1Q86WI1 4243 aa10.56□□□□□ -0.72
PCF11-203ENST00000530304 FAT1Q14517 4588 aa10.55□□□□□ -0.72
PCF11-203ENST00000530304 APOBP04114 4563 aaKnown RBP10.52□□□□□ -0.72
PCF11-203ENST00000530304 KRTAP10-4P60372 401 aaPredicted RBP10.52□□□□□ -0.73
PCF11-203ENST00000530304 A0A1B0GVY2 172 aa10.48□□□□□ -0.73
PCF11-203ENST00000530304 KRTAP3-1Q9BYR8 98 aa10.47□□□□□ -0.73
PCF11-203ENST00000530304 KRTAP21-3Q3LHN1 58 aa10.4□□□□□ -0.74
PCF11-203ENST00000530304 H0YAA0 97 aa10.34□□□□□ -0.75
PCF11-203ENST00000530304 LINC01554Q52M75 96 aa10.34□□□□□ -0.75
PCF11-203ENST00000530304 A0A1B0GU33 70 aa10.29□□□□□ -0.76
PCF11-203ENST00000530304 FLG2Q5D862 2391 aaPredicted RBP10.27□□□□□ -0.77
PCF11-203ENST00000530304 COX6B2Q6YFQ2 88 aa10.26□□□□□ -0.77
PCF11-203ENST00000530304 CSAG1Q6PB30 78 aa10.25□□□□□ -0.77
PCF11-203ENST00000530304 H1FX-AS1Q4G0G2 97 aa10.24□□□□□ -0.77
PCF11-203ENST00000530304 RYR2Q92736 4967 aa10.23□□□□□ -0.77
PCF11-203ENST00000530304 FAT3Q8TDW7 4589 aa10.21□□□□□ -0.77
PCF11-203ENST00000530304 TNXBP22105 4242 aa10.19□□□□□ -0.78
PCF11-203ENST00000530304 LRP1Q07954 4544 aaKnown RBP10.17□□□□□ -0.78
PCF11-203ENST00000530304 KMT2CQ8NEZ4 4911 aaKnown RBP10.14□□□□□ -0.79
PCF11-203ENST00000530304 KRTAP10-8P60410 259 aa10.12□□□□□ -0.79
PCF11-203ENST00000530304 HSPG2P98160 4391 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 412.4 ms