RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 TMEM167BQ9NRX6 74 aa0.03□□□□□ -2.4
VPS50-212ENST00000476413 DDX60Q8IY21 1712 aaKnown RBP0.03□□□□□ -2.4
VPS50-212ENST00000476413 BOD1L1Q8NFC6 3051 aa0.03□□□□□ -2.4
VPS50-212ENST00000476413 FSIP2Q5CZC0 6907 aa0.03□□□□□ -2.41
VPS50-212ENST00000476413 EEA1Q15075 1411 aa0.03□□□□□ -2.41
VPS50-212ENST00000476413 ARHGAP35Q9NRY4 1499 aa0.03□□□□□ -2.41
VPS50-212ENST00000476413 CRYBG3Q68DQ2 2970 aa0.03□□□□□ -2.41
VPS50-212ENST00000476413 KIAA0586Q9BVV6 1533 aa0.03□□□□□ -2.41
VPS50-212ENST00000476413 MYCBP2O75592 4640 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 PLXNC1O60486 1568 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 DIP2BQ9P265 1576 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 MAST1Q9Y2H9 1570 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 PKHD1L1Q86WI1 4243 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 SYNE2Q8WXH0 6885 aaKnown RBP0.02□□□□□ -2.41
VPS50-212ENST00000476413 ADCY10Q96PN6 1610 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 CICQ96RK0 1608 aaPredicted RBP0.02□□□□□ -2.41
VPS50-212ENST00000476413 RYR1P21817 5038 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 KIF1AQ12756 1690 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 HMCN2Q8NDA2 5059 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 DNAH6Q9C0G6 4158 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 MGAQ8IWI9 3026 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 DMXL2Q8TDJ6 3036 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 ETDCA0A1B0GVM5 59 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 SMIM31A0A1B0GVY4 71 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 IFI6P09912 130 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 SMIM13P0DJ93 91 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 SPRR2EP22531 72 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 ATXN8Q156A1 80 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 KRTAP19-7Q3SYF9 63 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 NCBP2-AS2Q69YL0 99 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 SMIM5Q71RC9 77 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 CMC2Q9NRP2 79 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 SMCO4Q9NRQ5 59 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 VPS13BQ7Z7G8 4022 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 FANCD2Q9BXW9 1451 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 TRPM2O94759 1503 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 CLASP1Q7Z460 1538 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 LMTK2Q8IWU2 1503 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 DCAF1Q9Y4B6 1507 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 TRRAPQ9Y4A5 3859 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 GPR98Q8WXG9 6306 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 EIF2AK4Q9P2K8 1649 aaKnown RBP0.02□□□□□ -2.41
VPS50-212ENST00000476413 MROH2AA6NES4 1674 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 CROCC2H7BZ55 1655 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 ALS2Q96Q42 1657 aa0.02□□□□□ -2.41
VPS50-212ENST00000476413 PKD1P98161 4303 aa0.01□□□□□ -2.41
VPS50-212ENST00000476413 MACF1Q9UPN3 7388 aaKnown RBP0.01□□□□□ -2.41
VPS50-212ENST00000476413 LRP2P98164 4655 aa0.01□□□□□ -2.41
VPS50-212ENST00000476413 TRIOO75962 3097 aa0.01□□□□□ -2.41
VPS50-212ENST00000476413 PRUNE2Q8WUY3 3088 aa0.01□□□□□ -2.41
VPS50-212ENST00000476413 IGLV5-48A0A075B6I7 105 aa0.01□□□□□ -2.41
VPS50-212ENST00000476413 A0A087WXM4 84 aa0.01□□□□□ -2.41
VPS50-212ENST00000476413 LINC01546A6NGU7 62 aa0.01□□□□□ -2.41
VPS50-212ENST00000476413 MT1EP04732 61 aa0.01□□□□□ -2.41
VPS50-212ENST00000476413 TNP1P09430 55 aa0.01□□□□□ -2.41
VPS50-212ENST00000476413 MT1HL1P0DM35 61 aa0.01□□□□□ -2.41
VPS50-212ENST00000476413 RPS29P62273 56 aaKnown RBP0.01□□□□□ -2.41
VPS50-212ENST00000476413 WT1-ASQ06250 92 aa0.01□□□□□ -2.41
VPS50-212ENST00000476413 DEFB110Q30KQ9 67 aa0.01□□□□□ -2.41
VPS50-212ENST00000476413 CLPSL2Q6UWE3 100 aa0.01□□□□□ -2.41
VPS50-212ENST00000476413 KRTAP8-1Q8IUC2 63 aa0.01□□□□□ -2.41
VPS50-212ENST00000476413 DEFB106AQ8N104 65 aa0.01□□□□□ -2.41
VPS50-212ENST00000476413 SSPOA2VEC9 5147 aa0.01□□□□□ -2.41
VPS50-212ENST00000476413 HSPG2P98160 4391 aa0.01□□□□□ -2.41
VPS50-212ENST00000476413 VPS13DQ5THJ4 4388 aa0.01□□□□□ -2.41
VPS50-212ENST00000476413 CHD7Q9P2D1 2997 aa0.01□□□□□ -2.41
VPS50-212ENST00000476413 AGLP35573 1532 aa0.01□□□□□ -2.41
VPS50-212ENST00000476413 ERICH3Q5RHP9 1530 aa0.01□□□□□ -2.41
VPS50-212ENST00000476413 LRP1BQ9NZR2 4599 aa0.01□□□□□ -2.41
VPS50-212ENST00000476413 CDC42BPGQ6DT37 1551 aa0.01□□□□□ -2.41
VPS50-212ENST00000476413 DNMBPQ6XZF7 1577 aa0.01□□□□□ -2.41
VPS50-212ENST00000476413 UGGT1Q9NYU2 1555 aa0.01□□□□□ -2.41
VPS50-212ENST00000476413 PREX2Q70Z35 1606 aa0.01□□□□□ -2.41
VPS50-212ENST00000476413 CCDC180Q9P1Z9 1646 aa0.01□□□□□ -2.41
VPS50-212ENST00000476413 ITSN2Q9NZM3 1697 aa0.01□□□□□ -2.41
VPS50-212ENST00000476413 SVEP1Q4LDE5 3571 aa0.01□□□□□ -2.41
VPS50-212ENST00000476413 HERC1Q15751 4861 aa0.01□□□□□ -2.41
VPS50-212ENST00000476413 KMT2CQ8NEZ4 4911 aaKnown RBP0.01□□□□□ -2.41
VPS50-212ENST00000476413 FRYLO94915 3013 aa0□□□□□ -2.41
VPS50-212ENST00000476413 FREM2Q5SZK8 3169 aa0□□□□□ -2.41
VPS50-212ENST00000476413 RANBP2P49792 3224 aaKnown RBP0□□□□□ -2.41
VPS50-212ENST00000476413 RELNP78509 3460 aa0□□□□□ -2.41
VPS50-212ENST00000476413 FAT1Q14517 4588 aa0□□□□□ -2.41
VPS50-212ENST00000476413 EFCAB5A4FU69 1503 aa0□□□□□ -2.41
VPS50-212ENST00000476413 SNRPGP15A8MWD9 76 aa0□□□□□ -2.41
VPS50-212ENST00000476413 M0QY20 66 aa0□□□□□ -2.41
VPS50-212ENST00000476413 NDUFA4O00483 81 aa0□□□□□ -2.41
VPS50-212ENST00000476413 SFTA3P0C7M3 94 aa0□□□□□ -2.41
VPS50-212ENST00000476413 GLI2P10070 1586 aa0□□□□□ -2.41
VPS50-212ENST00000476413 IAPPP10997 89 aa0□□□□□ -2.41
VPS50-212ENST00000476413 LAMA2P24043 3122 aaKnown RBP0□□□□□ -2.41
VPS50-212ENST00000476413 PLNP26678 52 aa0□□□□□ -2.41
VPS50-212ENST00000476413 FCER1GP30273 86 aa0□□□□□ -2.41
VPS50-212ENST00000476413 LINC00158P58513 81 aa0□□□□□ -2.41
VPS50-212ENST00000476413 TIAM1Q13009 1591 aa0□□□□□ -2.41
VPS50-212ENST00000476413 NREPQ16612 68 aa0□□□□□ -2.41
VPS50-212ENST00000476413 DEFB136Q30KP8 78 aa0□□□□□ -2.41
VPS50-212ENST00000476413 KRTAP19-8Q3LI54 63 aa0□□□□□ -2.41
VPS50-212ENST00000476413 NEXMIFQ5QGS0 1516 aa0□□□□□ -2.41
VPS50-212ENST00000476413 IQGAP3Q86VI3 1631 aa0□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 110 ms