RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 A0A1B0GVX0 72 aa6.79□□□□□ -1.32
USP4-205ENST00000431357 ZNF861PO60384 105 aa6.79□□□□□ -1.32
USP4-205ENST00000431357 PSORS1C2Q9UIG4 136 aa6.79□□□□□ -1.32
USP4-205ENST00000431357 Q6ZR54 194 aa6.79□□□□□ -1.32
USP4-205ENST00000431357 LINC01558Q9Y6Z2 57 aa6.77□□□□□ -1.33
USP4-205ENST00000431357 VPS13DQ5THJ4 4388 aa6.76□□□□□ -1.33
USP4-205ENST00000431357 IGHV6-1A0A0B4J1U7 121 aa6.76□□□□□ -1.33
USP4-205ENST00000431357 MRPL34Q9BQ48 92 aaKnown RBP6.76□□□□□ -1.33
USP4-205ENST00000431357 COL7A1Q02388 2944 aa6.76□□□□□ -1.33
USP4-205ENST00000431357 PLA2G1BP04054 148 aaKnown RBP6.75□□□□□ -1.33
USP4-205ENST00000431357 DNAH7Q8WXX0 4024 aa6.74□□□□□ -1.33
USP4-205ENST00000431357 COA5Q86WW8 74 aa6.73□□□□□ -1.33
USP4-205ENST00000431357 SRRM2Q9UQ35 2752 aaKnown RBP6.73□□□□□ -1.33
USP4-205ENST00000431357 LINC00313P59037 77 aa6.73□□□□□ -1.33
USP4-205ENST00000431357 PCOTHQ58A44 107 aa6.71□□□□□ -1.33
USP4-205ENST00000431357 CSMD3Q7Z407 3707 aa6.71□□□□□ -1.34
USP4-205ENST00000431357 DNAH17Q9UFH2 4485 aa6.7□□□□□ -1.34
USP4-205ENST00000431357 IGLV7-43P04211 117 aa6.7□□□□□ -1.34
USP4-205ENST00000431357 ANAPC11Q9NYG5 84 aa6.7□□□□□ -1.34
USP4-205ENST00000431357 C1orf134Q5TEV5 83 aa6.68□□□□□ -1.34
USP4-205ENST00000431357 SSBP3-AS1Q7Z2R9 100 aa6.68□□□□□ -1.34
USP4-205ENST00000431357 DNAH8Q96JB1 4490 aa6.67□□□□□ -1.34
USP4-205ENST00000431357 NOTCH2NLQ7Z3S9 236 aa6.65□□□□□ -1.34
USP4-205ENST00000431357 TENM2Q9NT68 2774 aa6.65□□□□□ -1.34
USP4-205ENST00000431357 STARD9Q9P2P6 4700 aa6.65□□□□□ -1.34
USP4-205ENST00000431357 CIRBP-AS1Q8TBR5 109 aa6.64□□□□□ -1.35
USP4-205ENST00000431357 SPINK6Q6UWN8 80 aa6.63□□□□□ -1.35
USP4-205ENST00000431357 HECTD4Q9Y4D8 3996 aa6.63□□□□□ -1.35
USP4-205ENST00000431357 PRKDCP78527 4128 aaKnown RBP6.62□□□□□ -1.35
USP4-205ENST00000431357 KRTAP13-3Q3SY46 172 aa6.61□□□□□ -1.35
USP4-205ENST00000431357 DNAH2Q9P225 4427 aa6.61□□□□□ -1.35
USP4-205ENST00000431357 HRES1P13985 223 aa6.61□□□□□ -1.35
USP4-205ENST00000431357 SPINK7P58062 85 aa6.6□□□□□ -1.35
USP4-205ENST00000431357 PRAC1Q96KF2 57 aa6.59□□□□□ -1.35
USP4-205ENST00000431357 Q5W150 140 aa6.59□□□□□ -1.35
USP4-205ENST00000431357 SPAG11AQ6PDA7 123 aa6.57□□□□□ -1.36
USP4-205ENST00000431357 LY6G6CO95867 125 aa6.56□□□□□ -1.36
USP4-205ENST00000431357 RETNLBQ9BQ08 111 aa6.56□□□□□ -1.36
USP4-205ENST00000431357 FAM229AH3BQW9 127 aa6.55□□□□□ -1.36
USP4-205ENST00000431357 ACYP2P14621 99 aa6.55□□□□□ -1.36
USP4-205ENST00000431357 KRTAP21-3Q3LHN1 58 aa6.53□□□□□ -1.36
USP4-205ENST00000431357 FRAS1Q86XX4 4008 aa6.53□□□□□ -1.36
USP4-205ENST00000431357 KMT2AQ03164 3969 aa6.52□□□□□ -1.37
USP4-205ENST00000431357 KRTAP10-2P60368 255 aa6.52□□□□□ -1.37
USP4-205ENST00000431357 DNAH6Q9C0G6 4158 aa6.51□□□□□ -1.37
USP4-205ENST00000431357 KRTAP13-2Q52LG2 175 aa6.5□□□□□ -1.37
USP4-205ENST00000431357 Q6ZSA8 131 aa6.5□□□□□ -1.37
USP4-205ENST00000431357 DMAC1Q96GE9 116 aa6.5□□□□□ -1.37
USP4-205ENST00000431357 ALMS1Q8TCU4 4167 aa6.49□□□□□ -1.37
USP4-205ENST00000431357 DNAH11Q96DT5 4516 aa6.48□□□□□ -1.37
USP4-205ENST00000431357 IGKV2-30P06310 120 aa6.48□□□□□ -1.37
USP4-205ENST00000431357 SPATA8Q6RVD6 105 aa6.48□□□□□ -1.37
USP4-205ENST00000431357 ADM2Q7Z4H4 148 aa6.48□□□□□ -1.37
USP4-205ENST00000431357 DNAH5Q8TE73 4624 aa6.47□□□□□ -1.37
USP4-205ENST00000431357 DNHD1Q96M86 4753 aa6.46□□□□□ -1.37
USP4-205ENST00000431357 FBN3Q75N90 2809 aa6.46□□□□□ -1.38
USP4-205ENST00000431357 KRTAP16-1A8MUX0 517 aa6.45□□□□□ -1.38
USP4-205ENST00000431357 KRTAP10-1P60331 282 aa6.45□□□□□ -1.38
USP4-205ENST00000431357 MEGF8Q7Z7M0 2845 aa6.44□□□□□ -1.38
USP4-205ENST00000431357 KRTAP1-4P0C5Y4 121 aa6.43□□□□□ -1.38
USP4-205ENST00000431357 TGP01266 2768 aa6.4□□□□□ -1.38
USP4-205ENST00000431357 CSAG1Q6PB30 78 aa6.4□□□□□ -1.39
USP4-205ENST00000431357 SPINK1P00995 79 aa6.39□□□□□ -1.39
USP4-205ENST00000431357 TYMSOSQ8TAI1 123 aa6.37□□□□□ -1.39
USP4-205ENST00000431357 LCE2DQ5TA82 110 aaPredicted RBP6.37□□□□□ -1.39
USP4-205ENST00000431357 LRP1BQ9NZR2 4599 aa6.36□□□□□ -1.39
USP4-205ENST00000431357 A0A1B0GU69 56 aa6.36□□□□□ -1.39
USP4-205ENST00000431357 IGKV2D-30A0A075B6S6 120 aa6.35□□□□□ -1.39
USP4-205ENST00000431357 UQCR11O14957 56 aa6.35□□□□□ -1.39
USP4-205ENST00000431357 ROMO1P60602 79 aa6.34□□□□□ -1.39
USP4-205ENST00000431357 RPS29P62273 56 aaKnown RBP6.34□□□□□ -1.39
USP4-205ENST00000431357 MIR22HGQ0VDD5 57 aa6.34□□□□□ -1.39
USP4-205ENST00000431357 PKD1P98161 4303 aa6.33□□□□□ -1.4
USP4-205ENST00000431357 FAT2Q9NYQ8 4349 aa6.31□□□□□ -1.4
USP4-205ENST00000431357 LINC00304Q8N9R0 145 aa6.29□□□□□ -1.4
USP4-205ENST00000431357 VPS13BQ7Z7G8 4022 aa6.24□□□□□ -1.41
USP4-205ENST00000431357 KRTAP25-1Q3LHN0 102 aa6.24□□□□□ -1.41
USP4-205ENST00000431357 SACSQ9NZJ4 4579 aa6.24□□□□□ -1.41
USP4-205ENST00000431357 KRTAP3-3Q9BYR6 98 aa6.22□□□□□ -1.41
USP4-205ENST00000431357 KRTAP3-2Q9BYR7 98 aa6.22□□□□□ -1.41
USP4-205ENST00000431357 HYDINQ4G0P3 5121 aa6.21□□□□□ -1.42
USP4-205ENST00000431357 A8MUU9 505 aa6.18□□□□□ -1.42
USP4-205ENST00000431357 C20orf166-AS1Q96NR2 134 aa6.18□□□□□ -1.42
USP4-205ENST00000431357 Q8N1X5 172 aa6.17□□□□□ -1.42
USP4-205ENST00000431357 A0A0A0MQY5 61 aa6.16□□□□□ -1.42
USP4-205ENST00000431357 SMR3BP02814 79 aaPredicted RBP6.13□□□□□ -1.43
USP4-205ENST00000431357 C9orf92A6NGG3 77 aa6.11□□□□□ -1.43
USP4-205ENST00000431357 DYNC1H1Q14204 4646 aaKnown RBP6.09□□□□□ -1.43
USP4-205ENST00000431357 A0A1B0GVY2 172 aa6.09□□□□□ -1.43
USP4-205ENST00000431357 KRTAP10-4P60372 401 aaPredicted RBP6.09□□□□□ -1.43
USP4-205ENST00000431357 PKHD1L1Q86WI1 4243 aa6.09□□□□□ -1.43
USP4-205ENST00000431357 P0C880 135 aa6.07□□□□□ -1.44
USP4-205ENST00000431357 APOBP04114 4563 aaKnown RBP6.06□□□□□ -1.44
USP4-205ENST00000431357 KRTAP3-1Q9BYR8 98 aa6.05□□□□□ -1.44
USP4-205ENST00000431357 PKHD1P08F94 4074 aa6.03□□□□□ -1.44
USP4-205ENST00000431357 A0A1B0GU33 70 aa6.01□□□□□ -1.45
USP4-205ENST00000431357 COX6B2Q6YFQ2 88 aa6.01□□□□□ -1.45
USP4-205ENST00000431357 H0YAA0 97 aa5.99□□□□□ -1.45
USP4-205ENST00000431357 FAT1Q14517 4588 aa5.98□□□□□ -1.45
USP4-205ENST00000431357 H1FX-AS1Q4G0G2 97 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms