RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 NISCHQ9Y2I1 1504 aa23.31■■□□□ 1.32
USP4-205ENST00000431357 CCDC180Q9P1Z9 1646 aa19.88■□□□□ 0.77
USP4-205ENST00000431357 ZCCHC6Q5VYS8 1495 aaKnown RBP19.74■□□□□ 0.75
USP4-205ENST00000431357 SHROOM4Q9ULL8 1493 aa19.69■□□□□ 0.74
USP4-205ENST00000431357 SUPT5HO00267 1087 aaKnown RBP19.38■□□□□ 0.69
USP4-205ENST00000431357 DCAF1Q9Y4B6 1507 aa19.25■□□□□ 0.67
USP4-205ENST00000431357 DCAF8L2P0C7V8 631 aa19.1■□□□□ 0.65
USP4-205ENST00000431357 CHIC1Q5VXU3 224 aa18.97■□□□□ 0.63
USP4-205ENST00000431357 MYO15BQ96JP2 1530 aa18.83■□□□□ 0.61
USP4-205ENST00000431357 ABCC9O60706 1549 aa18.63■□□□□ 0.57
USP4-205ENST00000431357 HRCP23327 699 aa18.52■□□□□ 0.55
USP4-205ENST00000431357 SCRIBQ14160 1630 aa18.46■□□□□ 0.55
USP4-205ENST00000431357 RSF1Q96T23 1441 aaPredicted RBP18.43■□□□□ 0.54
USP4-205ENST00000431357 PCGF6Q9BYE7 350 aa18.37■□□□□ 0.53
USP4-205ENST00000431357 NACADO15069 1562 aa18.36■□□□□ 0.53
USP4-205ENST00000431357 RB1CC1Q8TDY2 1594 aa18.3■□□□□ 0.52
USP4-205ENST00000431357 LOC105371045A0A1W2PR82 267 aa18.3■□□□□ 0.52
USP4-205ENST00000431357 TRIM41Q8WV44 630 aa18.15■□□□□ 0.5
USP4-205ENST00000431357 TRIM26Q12899 539 aaPredicted RBP18.14■□□□□ 0.5
USP4-205ENST00000431357 PELP1Q8IZL8 1130 aaKnown RBP18.13■□□□□ 0.49
USP4-205ENST00000431357 CECR2Q9BXF3 1484 aa18.07■□□□□ 0.48
USP4-205ENST00000431357 MROH2BQ7Z745 1585 aa18.05■□□□□ 0.48
USP4-205ENST00000431357 WIZO95785 1651 aa17.95■□□□□ 0.46
USP4-205ENST00000431357 PPARGC1BQ86YN6 1023 aaKnown RBP17.94■□□□□ 0.46
USP4-205ENST00000431357 BAZ1AQ9NRL2 1556 aaPredicted RBP17.94■□□□□ 0.46
USP4-205ENST00000431357 ZEB1P37275 1124 aaPredicted RBP17.88■□□□□ 0.45
USP4-205ENST00000431357 FAM9AQ8IZU1 332 aaPredicted RBP17.86■□□□□ 0.45
USP4-205ENST00000431357 MYT1Q01538 1121 aa17.83■□□□□ 0.44
USP4-205ENST00000431357 EIF4G1Q04637 1599 aaKnown RBP17.81■□□□□ 0.44
USP4-205ENST00000431357 TOP2AP11388 1531 aaKnown RBP17.77■□□□□ 0.43
USP4-205ENST00000431357 SMARCA4P51532 1647 aa17.73■□□□□ 0.43
USP4-205ENST00000431357 UNC13AQ9UPW8 1703 aa17.64■□□□□ 0.41
USP4-205ENST00000431357 CCDC88BA6NC98 1476 aa17.64■□□□□ 0.41
USP4-205ENST00000431357 SMARCA2P51531 1590 aa17.63■□□□□ 0.41
USP4-205ENST00000431357 EHMT2Q96KQ7 1210 aa17.59■□□□□ 0.41
USP4-205ENST00000431357 ABCC8Q09428 1581 aa17.53■□□□□ 0.4
USP4-205ENST00000431357 EEA1Q15075 1411 aa17.52■□□□□ 0.4
USP4-205ENST00000431357 WRNQ14191 1432 aaPredicted RBP eCLIP17.5■□□□□ 0.39
USP4-205ENST00000431357 PEG3Q9GZU2 1588 aa17.46■□□□□ 0.39
USP4-205ENST00000431357 TNIKQ9UKE5 1360 aa17.45■□□□□ 0.38
USP4-205ENST00000431357 BICRAQ9NZM4 1560 aa17.44■□□□□ 0.38
USP4-205ENST00000431357 CEP162Q5TB80 1403 aa17.4■□□□□ 0.38
USP4-205ENST00000431357 SOGA1O94964 1423 aa17.4■□□□□ 0.38
USP4-205ENST00000431357 CSRNP3Q8WYN3 585 aa17.38■□□□□ 0.37
USP4-205ENST00000431357 GOLGA3Q08378 1498 aa17.32■□□□□ 0.36
USP4-205ENST00000431357 PABPN1Q86U42 306 aaKnown RBP eCLIP17.32■□□□□ 0.36
USP4-205ENST00000431357 CCER1Q8TC90 406 aaPredicted RBP17.3■□□□□ 0.36
USP4-205ENST00000431357 RUSC2Q8N2Y8 1516 aa17.28■□□□□ 0.36
USP4-205ENST00000431357 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.26■□□□□ 0.35
USP4-205ENST00000431357 UBTFP17480 764 aaKnown RBP17.26■□□□□ 0.35
USP4-205ENST00000431357 ATAD2BQ9ULI0 1458 aa17.26■□□□□ 0.35
USP4-205ENST00000431357 CEP164Q9UPV0 1460 aa17.23■□□□□ 0.35
USP4-205ENST00000431357 KIF21BO75037 1637 aa17.22■□□□□ 0.35
USP4-205ENST00000431357 BAZ1BQ9UIG0 1483 aaKnown RBP17.21■□□□□ 0.35
USP4-205ENST00000431357 SYNJ1O43426 1573 aa17.2■□□□□ 0.34
USP4-205ENST00000431357 CLIP1P30622 1438 aa17.08■□□□□ 0.33
USP4-205ENST00000431357 TTBK1Q5TCY1 1321 aaPredicted RBP17.07■□□□□ 0.32
USP4-205ENST00000431357 TOP2BQ02880 1626 aa17.06■□□□□ 0.32
USP4-205ENST00000431357 VPS8Q8N3P4 1428 aa17.05■□□□□ 0.32
USP4-205ENST00000431357 SCAF1Q9H7N4 1312 aaKnown RBP17.01■□□□□ 0.31
USP4-205ENST00000431357 BIVM-ERCC5R4GMW8 1640 aa17.01■□□□□ 0.31
USP4-205ENST00000431357 DIEXFQ68CQ4 756 aaKnown RBP17■□□□□ 0.31
USP4-205ENST00000431357 RAPGEF2Q9Y4G8 1499 aa17■□□□□ 0.31
USP4-205ENST00000431357 HMGXB3Q12766 1538 aa16.98■□□□□ 0.31
USP4-205ENST00000431357 APLP2Q06481 763 aa16.97■□□□□ 0.31
USP4-205ENST00000431357 NCAPD3P42695 1498 aa16.96■□□□□ 0.31
USP4-205ENST00000431357 ERICH3Q5RHP9 1530 aa16.96■□□□□ 0.3
USP4-205ENST00000431357 ACIN1Q9UKV3 1341 aaKnown RBP16.93■□□□□ 0.3
USP4-205ENST00000431357 ZNF316A6NFI3 1004 aaPredicted RBP16.91■□□□□ 0.3
USP4-205ENST00000431357 PRXQ9BXM0 1461 aa16.9■□□□□ 0.3
USP4-205ENST00000431357 CENPBP07199 599 aaPredicted RBP16.9■□□□□ 0.3
USP4-205ENST00000431357 HNRNPUL2Q1KMD3 747 aaKnown RBP16.85■□□□□ 0.29
USP4-205ENST00000431357 KIF27Q86VH2 1401 aa16.82■□□□□ 0.28
USP4-205ENST00000431357 CUX1P39880 1505 aa16.82■□□□□ 0.28
USP4-205ENST00000431357 CFTRP13569 1480 aa16.81■□□□□ 0.28
USP4-205ENST00000431357 NEUROD1Q13562 356 aa16.81■□□□□ 0.28
USP4-205ENST00000431357 ARAP1Q96P48 1450 aa16.79■□□□□ 0.28
USP4-205ENST00000431357 CLSPNQ9HAW4 1339 aa16.78■□□□□ 0.28
USP4-205ENST00000431357 RANGAP1P46060 587 aaPredicted RBP16.73■□□□□ 0.27
USP4-205ENST00000431357 PRDM2Q13029 1718 aa16.71■□□□□ 0.27
USP4-205ENST00000431357 RRBP1Q9P2E9 1410 aaKnown RBP16.68■□□□□ 0.26
USP4-205ENST00000431357 GTF3C3Q9Y5Q9 886 aa16.67■□□□□ 0.26
USP4-205ENST00000431357 ARHGAP35Q9NRY4 1499 aa16.64■□□□□ 0.25
USP4-205ENST00000431357 DHX57Q6P158 1386 aaKnown RBP16.64■□□□□ 0.25
USP4-205ENST00000431357 KANK4Q5T7N3 995 aaPredicted RBP16.63■□□□□ 0.25
USP4-205ENST00000431357 CUX2O14529 1486 aa16.62■□□□□ 0.25
USP4-205ENST00000431357 CADPSQ9ULU8 1353 aa16.61■□□□□ 0.25
USP4-205ENST00000431357 IGF1RP08069 1367 aa16.59■□□□□ 0.25
USP4-205ENST00000431357 MAP3K1Q13233 1512 aa16.59■□□□□ 0.25
USP4-205ENST00000431357 MIER1Q8N108 512 aa16.58■□□□□ 0.25
USP4-205ENST00000431357 CCNB3Q8WWL7 1395 aa16.57■□□□□ 0.24
USP4-205ENST00000431357 CARMIL1Q5VZK9 1371 aa16.53■□□□□ 0.24
USP4-205ENST00000431357 FGD5Q6ZNL6 1462 aa16.52■□□□□ 0.23
USP4-205ENST00000431357 TIAM1Q13009 1591 aa16.5■□□□□ 0.23
USP4-205ENST00000431357 YTHDC1Q96MU7 727 aaKnown RBP16.48■□□□□ 0.23
USP4-205ENST00000431357 FHAD1B1AJZ9 1412 aa16.46■□□□□ 0.23
USP4-205ENST00000431357 LRRC9Q6ZRR7 1453 aa16.44■□□□□ 0.22
USP4-205ENST00000431357 FANCD2Q9BXW9 1451 aa16.42■□□□□ 0.22
USP4-205ENST00000431357 CC2D2AQ9P2K1 1620 aa16.41■□□□□ 0.22
USP4-205ENST00000431357 DNMBPQ6XZF7 1577 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms