RNA–Protein interactions for RNA: ENST00000430328.6

RIF1-204, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,992 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-204ENST00000430328 CRYBG3Q68DQ2 2970 aa8.68□□□□□ -1.02
RIF1-204ENST00000430328 DMXL2Q8TDJ6 3036 aa8.68□□□□□ -1.02
RIF1-204ENST00000430328 KRTAP10-10P60014 251 aa8.66□□□□□ -1.02
RIF1-204ENST00000430328 VPS13AQ96RL7 3174 aa8.64□□□□□ -1.03
RIF1-204ENST00000430328 CELSR3Q9NYQ7 3312 aa8.6□□□□□ -1.03
RIF1-204ENST00000430328 XP32Q5T750 250 aa8.57□□□□□ -1.04
RIF1-204ENST00000430328 HIVEP1P15822 2718 aa8.56□□□□□ -1.04
RIF1-204ENST00000430328 CHD7Q9P2D1 2997 aa8.56□□□□□ -1.04
RIF1-204ENST00000430328 XIRP2A4UGR9 3374 aa8.54□□□□□ -1.04
RIF1-204ENST00000430328 TENM1Q9UKZ4 2725 aa8.54□□□□□ -1.04
RIF1-204ENST00000430328 TGP01266 2768 aa8.53□□□□□ -1.04
RIF1-204ENST00000430328 KRTAP12-2P59991 146 aa8.48□□□□□ -1.05
RIF1-204ENST00000430328 LAMA1P25391 3075 aa8.48□□□□□ -1.05
RIF1-204ENST00000430328 NF1P21359 2839 aa8.45□□□□□ -1.06
RIF1-204ENST00000430328 PDZD2O15018 2839 aa8.42□□□□□ -1.06
RIF1-204ENST00000430328 TPRXLQ17RH7 258 aa8.41□□□□□ -1.06
RIF1-204ENST00000430328 HTTP42858 3142 aa8.39□□□□□ -1.07
RIF1-204ENST00000430328 CELSR2Q9HCU4 2923 aa8.39□□□□□ -1.07
RIF1-204ENST00000430328 MKI67P46013 3256 aaKnown RBP8.38□□□□□ -1.07
RIF1-204ENST00000430328 FLNCQ14315 2725 aa8.38□□□□□ -1.07
RIF1-204ENST00000430328 KRTAP13-4Q3LI77 160 aa8.36□□□□□ -1.07
RIF1-204ENST00000430328 INE1O15225 51 aa8.32□□□□□ -1.08
RIF1-204ENST00000430328 NIPBLQ6KC79 2804 aaeCLIP8.31□□□□□ -1.081e-8■■□□□ 13.7
RIF1-204ENST00000430328 ATMQ13315 3056 aa8.27□□□□□ -1.08
RIF1-204ENST00000430328 KRTAP15-1Q3LI76 137 aa8.25□□□□□ -1.09
RIF1-204ENST00000430328 KRTAP1-4P0C5Y4 121 aa8.24□□□□□ -1.09
RIF1-204ENST00000430328 ZZEF1O43149 2961 aa8.22□□□□□ -1.09
RIF1-204ENST00000430328 BOD1L1Q8NFC6 3051 aa8.22□□□□□ -1.09
RIF1-204ENST00000430328 TACC2O95359 2948 aa8.19□□□□□ -1.1
RIF1-204ENST00000430328 CFAP47Q6ZTR5 3102 aa8.19□□□□□ -1.1
RIF1-204ENST00000430328 CELSR1Q9NYQ6 3014 aa8.19□□□□□ -1.1
RIF1-204ENST00000430328 SRRM2Q9UQ35 2752 aaKnown RBP8.14□□□□□ -1.11
RIF1-204ENST00000430328 COL6A3P12111 3177 aa8.13□□□□□ -1.11
RIF1-204ENST00000430328 KRTAP13-3Q3SY46 172 aa8.12□□□□□ -1.11
RIF1-204ENST00000430328 NBEAQ8NFP9 2946 aa8.11□□□□□ -1.11
RIF1-204ENST00000430328 DCHS2Q6V1P9 2916 aa8.11□□□□□ -1.11
RIF1-204ENST00000430328 KRTAP12-1P59990 96 aa8.11□□□□□ -1.11
RIF1-204ENST00000430328 DMXL1Q9Y485 3027 aa8.11□□□□□ -1.11
RIF1-204ENST00000430328 ADGRG4Q8IZF6 3080 aa8.11□□□□□ -1.11
RIF1-204ENST00000430328 TNRC18O15417 2968 aaPredicted RBP8.09□□□□□ -1.11
RIF1-204ENST00000430328 DNAH14Q0VDD8 3507 aa8.06□□□□□ -1.12
RIF1-204ENST00000430328 TENM4Q6N022 2769 aa8.03□□□□□ -1.12
RIF1-204ENST00000430328 LAMA3Q16787 3333 aa8.03□□□□□ -1.12
RIF1-204ENST00000430328 SPEGQ15772 3267 aa8.02□□□□□ -1.13
RIF1-204ENST00000430328 VCANP13611 3396 aa8.02□□□□□ -1.13
RIF1-204ENST00000430328 BRCA2P51587 3418 aa7.91□□□□□ -1.14
RIF1-204ENST00000430328 VWFP04275 2813 aa7.88□□□□□ -1.15
RIF1-204ENST00000430328 ZFHX4Q86UP3 3567 aa7.87□□□□□ -1.15
RIF1-204ENST00000430328 TENM2Q9NT68 2774 aa7.86□□□□□ -1.15
RIF1-204ENST00000430328 PKD1L1Q8TDX9 2849 aa7.85□□□□□ -1.15
RIF1-204ENST00000430328 ZANQ9Y493 2812 aa7.85□□□□□ -1.15
RIF1-204ENST00000430328 USP34Q70CQ2 3546 aa7.8□□□□□ -1.16
RIF1-204ENST00000430328 KRTAP21-3Q3LHN1 58 aa7.79□□□□□ -1.16
RIF1-204ENST00000430328 SZT2Q5T011 3432 aa7.79□□□□□ -1.16
RIF1-204ENST00000430328 FBN2P35556 2912 aa7.75□□□□□ -1.17
RIF1-204ENST00000430328 CRCT1Q9UGL9 99 aa7.73□□□□□ -1.17
RIF1-204ENST00000430328 CDH23Q9H251 3354 aa7.66□□□□□ -1.18
RIF1-204ENST00000430328 COL7A1Q02388 2944 aa7.63□□□□□ -1.19
RIF1-204ENST00000430328 KRTAP10-12P60413 245 aa7.58□□□□□ -1.2
RIF1-204ENST00000430328 MXRA5Q9NR99 2828 aa7.54□□□□□ -1.2
RIF1-204ENST00000430328 MEGF8Q7Z7M0 2845 aa7.53□□□□□ -1.2
RIF1-204ENST00000430328 LOC400499M0QZD8 3231 aa7.52□□□□□ -1.21
RIF1-204ENST00000430328 KRTAP3-1Q9BYR8 98 aa7.52□□□□□ -1.21
RIF1-204ENST00000430328 KRTAP10-6P60371 365 aaPredicted RBP7.5□□□□□ -1.21
RIF1-204ENST00000430328 EYSQ5T1H1 3165 aa7.41□□□□□ -1.22
RIF1-204ENST00000430328 KRTAP12-3P60328 96 aa7.37□□□□□ -1.23
RIF1-204ENST00000430328 ASPMQ8IZT6 3477 aa7.36□□□□□ -1.23
RIF1-204ENST00000430328 MYO15AQ9UKN7 3530 aa7.34□□□□□ -1.23
RIF1-204ENST00000430328 KRTAP10-5P60370 271 aa7.33□□□□□ -1.24
RIF1-204ENST00000430328 WDFY3Q8IZQ1 3526 aa7.32□□□□□ -1.24
RIF1-204ENST00000430328 SPTBN5Q9NRC6 3674 aaKnown RBP7.32□□□□□ -1.24
RIF1-204ENST00000430328 KRTAP23-1A1A580 65 aa7.3□□□□□ -1.24
RIF1-204ENST00000430328 NBPF19A0A087WUL8 3843 aa7.29□□□□□ -1.24
RIF1-204ENST00000430328 OTOGQ6ZRI0 2925 aa7.29□□□□□ -1.24
RIF1-204ENST00000430328 FBN3Q75N90 2809 aa7.27□□□□□ -1.25
RIF1-204ENST00000430328 HRNRQ86YZ3 2850 aaPredicted RBP7.26□□□□□ -1.25
RIF1-204ENST00000430328 DCHS1Q96JQ0 3298 aa7.26□□□□□ -1.25
RIF1-204ENST00000430328 ZFHX3Q15911 3703 aa7.13□□□□□ -1.27
RIF1-204ENST00000430328 LCE3AQ5TA76 89 aa7.13□□□□□ -1.27
RIF1-204ENST00000430328 KRTAP3-2Q9BYR7 98 aa7.08□□□□□ -1.28
RIF1-204ENST00000430328 LAMA5O15230 3695 aa7.07□□□□□ -1.28
RIF1-204ENST00000430328 CSMD1Q96PZ7 3565 aa7.04□□□□□ -1.28
RIF1-204ENST00000430328 KRTAP3-3Q9BYR6 98 aa7.01□□□□□ -1.29
RIF1-204ENST00000430328 SPENQ96T58 3664 aaKnown RBP7□□□□□ -1.29
RIF1-204ENST00000430328 RELNP78509 3460 aa6.98□□□□□ -1.29
RIF1-204ENST00000430328 SMG1Q96Q15 3661 aaKnown RBP6.93□□□□□ -1.3
RIF1-204ENST00000430328 KRTAP8-1Q8IUC2 63 aa6.87□□□□□ -1.31
RIF1-204ENST00000430328 FBN1P35555 2871 aaKnown RBP6.84□□□□□ -1.31
RIF1-204ENST00000430328 CUBNO60494 3623 aa6.74□□□□□ -1.33
RIF1-204ENST00000430328 DMDP11532 3685 aa6.63□□□□□ -1.35
RIF1-204ENST00000430328 MT1HL1P0DM35 61 aa6.61□□□□□ -1.35
RIF1-204ENST00000430328 MUC3AQ02505 3323 aa6.58□□□□□ -1.36
RIF1-204ENST00000430328 TRRAPQ9Y4A5 3859 aa6.56□□□□□ -1.36
RIF1-204ENST00000430328 CSMD3Q7Z407 3707 aa6.56□□□□□ -1.36
RIF1-204ENST00000430328 KRTAP10-7P60409 375 aaPredicted RBP6.55□□□□□ -1.36
RIF1-204ENST00000430328 LORP23490 312 aaPredicted RBP6.53□□□□□ -1.36
RIF1-204ENST00000430328 SVEP1Q4LDE5 3571 aa6.42□□□□□ -1.38
RIF1-204ENST00000430328 ALMS1Q8TCU4 4167 aa6.36□□□□□ -1.39
RIF1-204ENST00000430328 VPS13CQ709C8 3753 aa6.35□□□□□ -1.39
RIF1-204ENST00000430328 LCE3CQ5T5A8 94 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms