RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 IGLV7-46A0A075B6I9 117 aa6.62□□□□□ -1.35
CCDC40-204ENST00000397545 ANK2Q01484 3957 aa6.62□□□□□ -1.35
CCDC40-204ENST00000397545 SPINT4Q6UDR6 99 aa6.61□□□□□ -1.35
CCDC40-204ENST00000397545 HRES1P13985 223 aa6.6□□□□□ -1.35
CCDC40-204ENST00000397545 LCA10Q71F78 164 aa6.59□□□□□ -1.35
CCDC40-204ENST00000397545 LINC00472Q9H8W2 130 aa6.59□□□□□ -1.35
CCDC40-204ENST00000397545 TENM2Q9NT68 2774 aa6.57□□□□□ -1.36
CCDC40-204ENST00000397545 A0A0D9SG42 100 aa6.57□□□□□ -1.36
CCDC40-204ENST00000397545 SRRM2Q9UQ35 2752 aaKnown RBP6.56□□□□□ -1.36
CCDC40-204ENST00000397545 Q5VV11 94 aa6.55□□□□□ -1.36
CCDC40-204ENST00000397545 PRAC1Q96KF2 57 aa6.53□□□□□ -1.36
CCDC40-204ENST00000397545 Q75L30 129 aa6.53□□□□□ -1.36
CCDC40-204ENST00000397545 H3BS24 57 aa6.52□□□□□ -1.37
CCDC40-204ENST00000397545 SPINK7P58062 85 aa6.52□□□□□ -1.37
CCDC40-204ENST00000397545 RBM12B-AS1Q9P1G2 102 aa6.51□□□□□ -1.37
CCDC40-204ENST00000397545 SPRR1BP22528 89 aa6.51□□□□□ -1.37
CCDC40-204ENST00000397545 CMYA5Q8N3K9 4069 aa6.51□□□□□ -1.37
CCDC40-204ENST00000397545 LINC01558Q9Y6Z2 57 aa6.5□□□□□ -1.37
CCDC40-204ENST00000397545 KRTAP4-16G5E9R7 235 aaPredicted RBP6.5□□□□□ -1.37
CCDC40-204ENST00000397545 PANO1I0J062 215 aa6.5□□□□□ -1.37
CCDC40-204ENST00000397545 LINC01554Q52M75 96 aa6.48□□□□□ -1.37
CCDC40-204ENST00000397545 HUWE1Q7Z6Z7 4374 aaKnown RBP6.48□□□□□ -1.37
CCDC40-204ENST00000397545 CRIPTQ9P021 101 aa6.47□□□□□ -1.37
CCDC40-204ENST00000397545 KRTAP7-1Q8IUC3 87 aa6.47□□□□□ -1.37
CCDC40-204ENST00000397545 Q5W150 140 aa6.46□□□□□ -1.38
CCDC40-204ENST00000397545 PLAC8Q9NZF1 115 aa6.46□□□□□ -1.38
CCDC40-204ENST00000397545 CSMD3Q7Z407 3707 aa6.45□□□□□ -1.38
CCDC40-204ENST00000397545 A0A1B0GU33 70 aa6.43□□□□□ -1.38
CCDC40-204ENST00000397545 KRTAP29-1A8MX34 341 aaPredicted RBP6.42□□□□□ -1.38
CCDC40-204ENST00000397545 KRTAP11-1Q8IUC1 163 aa6.42□□□□□ -1.38
CCDC40-204ENST00000397545 A0A087X002 238 aa6.41□□□□□ -1.38
CCDC40-204ENST00000397545 NOTCH2NLQ7Z3S9 236 aa6.41□□□□□ -1.38
CCDC40-204ENST00000397545 ZCCHC13Q8WW36 166 aaKnown RBP6.4□□□□□ -1.38
CCDC40-204ENST00000397545 COL7A1Q02388 2944 aa6.4□□□□□ -1.39
CCDC40-204ENST00000397545 J3QL48 77 aa6.39□□□□□ -1.39
CCDC40-204ENST00000397545 DNAH3Q8TD57 4116 aa6.39□□□□□ -1.39
CCDC40-204ENST00000397545 COX6B2Q6YFQ2 88 aa6.38□□□□□ -1.39
CCDC40-204ENST00000397545 DNAH10Q8IVF4 4471 aa6.38□□□□□ -1.39
CCDC40-204ENST00000397545 LYSTQ99698 3801 aa6.37□□□□□ -1.39
CCDC40-204ENST00000397545 KRTAP10-2P60368 255 aa6.36□□□□□ -1.39
CCDC40-204ENST00000397545 CSAG1Q6PB30 78 aa6.35□□□□□ -1.39
CCDC40-204ENST00000397545 A8MU10 97 aa6.34□□□□□ -1.39
CCDC40-204ENST00000397545 KRTAP10-1P60331 282 aa6.32□□□□□ -1.4
CCDC40-204ENST00000397545 DNAH9Q9NYC9 4486 aa6.32□□□□□ -1.4
CCDC40-204ENST00000397545 Q6ZR54 194 aa6.31□□□□□ -1.4
CCDC40-204ENST00000397545 DMAC1Q96GE9 116 aa6.29□□□□□ -1.4
CCDC40-204ENST00000397545 LINC00483Q53H64 154 aa6.28□□□□□ -1.4
CCDC40-204ENST00000397545 LCE6AA0A183 80 aa6.28□□□□□ -1.4
CCDC40-204ENST00000397545 PLECQ15149 4684 aaKnown RBP6.26□□□□□ -1.41
CCDC40-204ENST00000397545 DNAH1Q9P2D7 4330 aa6.25□□□□□ -1.41
CCDC40-204ENST00000397545 Q6ZRN7 208 aaPredicted RBP6.25□□□□□ -1.41
CCDC40-204ENST00000397545 Q6ZSA8 131 aa6.25□□□□□ -1.41
CCDC40-204ENST00000397545 DNAH7Q8WXX0 4024 aa6.22□□□□□ -1.41
CCDC40-204ENST00000397545 SPATA8Q6RVD6 105 aa6.2□□□□□ -1.42
CCDC40-204ENST00000397545 KRTAP21-3Q3LHN1 58 aa6.18□□□□□ -1.42
CCDC40-204ENST00000397545 PRKDCP78527 4128 aaKnown RBP6.18□□□□□ -1.42
CCDC40-204ENST00000397545 STARD9Q9P2P6 4700 aa6.17□□□□□ -1.42
CCDC40-204ENST00000397545 ADM2Q7Z4H4 148 aa6.17□□□□□ -1.42
CCDC40-204ENST00000397545 MEGF8Q7Z7M0 2845 aa6.16□□□□□ -1.42
CCDC40-204ENST00000397545 CAMK2N1Q7Z7J9 78 aa6.16□□□□□ -1.42
CCDC40-204ENST00000397545 FBN3Q75N90 2809 aa6.16□□□□□ -1.42
CCDC40-204ENST00000397545 S4R3F8 94 aa6.16□□□□□ -1.42
CCDC40-204ENST00000397545 KRTAP13-1Q8IUC0 172 aa6.14□□□□□ -1.43
CCDC40-204ENST00000397545 DNHD1Q96M86 4753 aa6.13□□□□□ -1.43
CCDC40-204ENST00000397545 A6NN06 94 aa6.13□□□□□ -1.43
CCDC40-204ENST00000397545 RPL37P61927 97 aaKnown RBP6.13□□□□□ -1.43
CCDC40-204ENST00000397545 H1FX-AS1Q4G0G2 97 aa6.12□□□□□ -1.43
CCDC40-204ENST00000397545 Q5VSD8 79 aa6.11□□□□□ -1.43
CCDC40-204ENST00000397545 KRTAP13-2Q52LG2 175 aa6.11□□□□□ -1.43
CCDC40-204ENST00000397545 LUZP6Q538Z0 58 aa6.11□□□□□ -1.43
CCDC40-204ENST00000397545 KMT2AQ03164 3969 aa6.1□□□□□ -1.43
CCDC40-204ENST00000397545 R4GN34 69 aa6.08□□□□□ -1.44
CCDC40-204ENST00000397545 VPS13DQ5THJ4 4388 aa6.07□□□□□ -1.44
CCDC40-204ENST00000397545 DYNC2H1Q8NCM8 4307 aaKnown RBP6.06□□□□□ -1.44
CCDC40-204ENST00000397545 ROMO1P60602 79 aa6.06□□□□□ -1.44
CCDC40-204ENST00000397545 ASB16-AS1Q495Z4 193 aa6.03□□□□□ -1.44
CCDC40-204ENST00000397545 DNAH2Q9P225 4427 aa6.01□□□□□ -1.45
CCDC40-204ENST00000397545 M0QZ58 72 aa6□□□□□ -1.45
CCDC40-204ENST00000397545 FRAS1Q86XX4 4008 aa6□□□□□ -1.45
CCDC40-204ENST00000397545 M0R2T5 61 aa5.99□□□□□ -1.45
CCDC40-204ENST00000397545 HECTD4Q9Y4D8 3996 aa5.97□□□□□ -1.45
CCDC40-204ENST00000397545 DNAH17Q9UFH2 4485 aa5.96□□□□□ -1.46
CCDC40-204ENST00000397545 DNAH8Q96JB1 4490 aa5.95□□□□□ -1.46
CCDC40-204ENST00000397545 DNAH11Q96DT5 4516 aa5.94□□□□□ -1.46
CCDC40-204ENST00000397545 A0A0A0MQY5 61 aa5.94□□□□□ -1.46
CCDC40-204ENST00000397545 KRTAP25-1Q3LHN0 102 aa5.93□□□□□ -1.46
CCDC40-204ENST00000397545 DNAH6Q9C0G6 4158 aa5.92□□□□□ -1.46
CCDC40-204ENST00000397545 SEC61BP60468 96 aaKnown RBP5.9□□□□□ -1.47
CCDC40-204ENST00000397545 DNAH5Q8TE73 4624 aa5.86□□□□□ -1.47
CCDC40-204ENST00000397545 HYDINQ4G0P3 5121 aa5.85□□□□□ -1.47
CCDC40-204ENST00000397545 RPS29P62273 56 aaKnown RBP5.84□□□□□ -1.47
CCDC40-204ENST00000397545 LRP1BQ9NZR2 4599 aa5.83□□□□□ -1.48
CCDC40-204ENST00000397545 KRTAP1-4P0C5Y4 121 aa5.83□□□□□ -1.48
CCDC40-204ENST00000397545 A8MUU9 505 aa5.81□□□□□ -1.48
CCDC40-204ENST00000397545 NDUFAF8A1L188 74 aa5.8□□□□□ -1.48
CCDC40-204ENST00000397545 ALMS1Q8TCU4 4167 aa5.78□□□□□ -1.48
CCDC40-204ENST00000397545 C20orf166-AS1Q96NR2 134 aa5.77□□□□□ -1.49
CCDC40-204ENST00000397545 C10orf95Q9H7T3 257 aa5.75□□□□□ -1.49
CCDC40-204ENST00000397545 H0YAA0 97 aa5.75□□□□□ -1.49
CCDC40-204ENST00000397545 KRTAP16-1A8MUX0 517 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms