RNA–Protein interactions for RNA: ENST00000382004.7

RFX3-204, Transcript of regulatory factor X3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFX3, Length 9,307 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-204ENST00000382004 RANBP2P49792 3224 aaKnown RBP2.98□□□□□ -1.93
RFX3-204ENST00000382004 KRTAP1-4P0C5Y4 121 aa2.98□□□□□ -1.93
RFX3-204ENST00000382004 DMXL2Q8TDJ6 3036 aa2.98□□□□□ -1.93
RFX3-204ENST00000382004 XIRP2A4UGR9 3374 aa2.98□□□□□ -1.93
RFX3-204ENST00000382004 MKI67P46013 3256 aaKnown RBP2.98□□□□□ -1.93
RFX3-204ENST00000382004 HIVEP1P15822 2718 aa2.97□□□□□ -1.93
RFX3-204ENST00000382004 UNC80Q8N2C7 3258 aa2.96□□□□□ -1.94
RFX3-204ENST00000382004 VPS13AQ96RL7 3174 aa2.96□□□□□ -1.94
RFX3-204ENST00000382004 LRBAP50851 2863 aa2.95□□□□□ -1.94
RFX3-204ENST00000382004 COL12A1Q99715 3063 aa2.94□□□□□ -1.94
RFX3-204ENST00000382004 KRTAP13-3Q3SY46 172 aa2.93□□□□□ -1.94
RFX3-204ENST00000382004 KRTAP15-1Q3LI76 137 aa2.92□□□□□ -1.94
RFX3-204ENST00000382004 KRTAP13-4Q3LI77 160 aa2.91□□□□□ -1.94
RFX3-204ENST00000382004 CFAP47Q6ZTR5 3102 aa2.9□□□□□ -1.95
RFX3-204ENST00000382004 CHD9Q3L8U1 2897 aa2.89□□□□□ -1.95
RFX3-204ENST00000382004 TACC2O95359 2948 aa2.89□□□□□ -1.95
RFX3-204ENST00000382004 FRYLO94915 3013 aa2.89□□□□□ -1.95
RFX3-204ENST00000382004 TENM1Q9UKZ4 2725 aa2.88□□□□□ -1.95
RFX3-204ENST00000382004 TENM3Q9P273 2699 aa2.88□□□□□ -1.95
RFX3-204ENST00000382004 HTTP42858 3142 aa2.88□□□□□ -1.95
RFX3-204ENST00000382004 LAMA1P25391 3075 aa2.88□□□□□ -1.95
RFX3-204ENST00000382004 TGP01266 2768 aa2.86□□□□□ -1.95
RFX3-204ENST00000382004 LAMA3Q16787 3333 aa2.86□□□□□ -1.95
RFX3-204ENST00000382004 KRTAP21-3Q3LHN1 58 aa2.86□□□□□ -1.95
RFX3-204ENST00000382004 CELSR2Q9HCU4 2923 aa2.86□□□□□ -1.95
RFX3-204ENST00000382004 KRTAP12-1P59990 96 aa2.86□□□□□ -1.95
RFX3-204ENST00000382004 CRCT1Q9UGL9 99 aa2.85□□□□□ -1.95
RFX3-204ENST00000382004 ATMQ13315 3056 aa2.84□□□□□ -1.96
RFX3-204ENST00000382004 COL6A3P12111 3177 aa2.84□□□□□ -1.96
RFX3-204ENST00000382004 FLNCQ14315 2725 aa2.83□□□□□ -1.96
RFX3-204ENST00000382004 SPEGQ15772 3267 aa2.82□□□□□ -1.96
RFX3-204ENST00000382004 BOD1L1Q8NFC6 3051 aa2.82□□□□□ -1.96
RFX3-204ENST00000382004 VCANP13611 3396 aa2.82□□□□□ -1.96
RFX3-204ENST00000382004 TENM4Q6N022 2769 aa2.82□□□□□ -1.96
RFX3-204ENST00000382004 NF1P21359 2839 aa2.81□□□□□ -1.96
RFX3-204ENST00000382004 PDZD2O15018 2839 aa2.8□□□□□ -1.96
RFX3-204ENST00000382004 BRCA2P51587 3418 aa2.8□□□□□ -1.96
RFX3-204ENST00000382004 DNAH14Q0VDD8 3507 aa2.79□□□□□ -1.96
RFX3-204ENST00000382004 ADGRG4Q8IZF6 3080 aa2.79□□□□□ -1.96
RFX3-204ENST00000382004 ZZEF1O43149 2961 aa2.78□□□□□ -1.96
RFX3-204ENST00000382004 DCHS2Q6V1P9 2916 aa2.78□□□□□ -1.96
RFX3-204ENST00000382004 INE1O15225 51 aa2.77□□□□□ -1.97
RFX3-204ENST00000382004 CELSR1Q9NYQ6 3014 aa2.77□□□□□ -1.97
RFX3-204ENST00000382004 NIPBLQ6KC79 2804 aaeCLIP2.76□□□□□ -1.97
RFX3-204ENST00000382004 NBEAQ8NFP9 2946 aa2.75□□□□□ -1.97
RFX3-204ENST00000382004 TENM2Q9NT68 2774 aa2.74□□□□□ -1.97
RFX3-204ENST00000382004 CDH23Q9H251 3354 aa2.73□□□□□ -1.97
RFX3-204ENST00000382004 TNRC18O15417 2968 aaPredicted RBP2.72□□□□□ -1.97
RFX3-204ENST00000382004 ZFHX4Q86UP3 3567 aa2.71□□□□□ -1.98
RFX3-204ENST00000382004 DMXL1Q9Y485 3027 aa2.71□□□□□ -1.98
RFX3-204ENST00000382004 KRTAP3-1Q9BYR8 98 aa2.7□□□□□ -1.98
RFX3-204ENST00000382004 KRTAP10-12P60413 245 aa2.69□□□□□ -1.98
RFX3-204ENST00000382004 PKD1L1Q8TDX9 2849 aa2.69□□□□□ -1.98
RFX3-204ENST00000382004 VWFP04275 2813 aa2.69□□□□□ -1.98
RFX3-204ENST00000382004 SZT2Q5T011 3432 aa2.69□□□□□ -1.98
RFX3-204ENST00000382004 ZANQ9Y493 2812 aa2.68□□□□□ -1.98
RFX3-204ENST00000382004 USP34Q70CQ2 3546 aa2.67□□□□□ -1.98
RFX3-204ENST00000382004 KRTAP10-6P60371 365 aaPredicted RBP2.66□□□□□ -1.98
RFX3-204ENST00000382004 FBN2P35556 2912 aa2.65□□□□□ -1.98
RFX3-204ENST00000382004 LOC400499M0QZD8 3231 aa2.63□□□□□ -1.99
RFX3-204ENST00000382004 KRTAP10-5P60370 271 aa2.62□□□□□ -1.99
RFX3-204ENST00000382004 KRTAP12-3P60328 96 aa2.6□□□□□ -1.99
RFX3-204ENST00000382004 EYSQ5T1H1 3165 aa2.6□□□□□ -1.99
RFX3-204ENST00000382004 SRRM2Q9UQ35 2752 aaKnown RBP2.58□□□□□ -2
RFX3-204ENST00000382004 ASPMQ8IZT6 3477 aa2.57□□□□□ -2
RFX3-204ENST00000382004 LCE3AQ5TA76 89 aa2.57□□□□□ -2
RFX3-204ENST00000382004 MXRA5Q9NR99 2828 aa2.56□□□□□ -2
RFX3-204ENST00000382004 WDFY3Q8IZQ1 3526 aa2.55□□□□□ -2
RFX3-204ENST00000382004 DCHS1Q96JQ0 3298 aa2.55□□□□□ -2
RFX3-204ENST00000382004 NBPF19A0A087WUL8 3843 aa2.54□□□□□ -2
RFX3-204ENST00000382004 MEGF8Q7Z7M0 2845 aa2.54□□□□□ -2
RFX3-204ENST00000382004 HRNRQ86YZ3 2850 aaPredicted RBP2.54□□□□□ -2
RFX3-204ENST00000382004 COL7A1Q02388 2944 aa2.53□□□□□ -2
RFX3-204ENST00000382004 MYO15AQ9UKN7 3530 aa2.53□□□□□ -2
RFX3-204ENST00000382004 KRTAP3-2Q9BYR7 98 aa2.52□□□□□ -2.01
RFX3-204ENST00000382004 KRTAP3-3Q9BYR6 98 aa2.51□□□□□ -2.01
RFX3-204ENST00000382004 SPTBN5Q9NRC6 3674 aaKnown RBP2.49□□□□□ -2.01
RFX3-204ENST00000382004 KRTAP8-1Q8IUC2 63 aa2.49□□□□□ -2.01
RFX3-204ENST00000382004 FBN3Q75N90 2809 aa2.49□□□□□ -2.01
RFX3-204ENST00000382004 LORP23490 312 aaPredicted RBP2.47□□□□□ -2.01
RFX3-204ENST00000382004 CSMD1Q96PZ7 3565 aa2.47□□□□□ -2.01
RFX3-204ENST00000382004 MT1HL1P0DM35 61 aa2.46□□□□□ -2.02
RFX3-204ENST00000382004 KRTAP23-1A1A580 65 aa2.46□□□□□ -2.02
RFX3-204ENST00000382004 ZFHX3Q15911 3703 aa2.45□□□□□ -2.02
RFX3-204ENST00000382004 LAMA5O15230 3695 aa2.42□□□□□ -2.02
RFX3-204ENST00000382004 RELNP78509 3460 aa2.41□□□□□ -2.02
RFX3-204ENST00000382004 KRTAP4-5Q9BYR2 181 aa2.41□□□□□ -2.02
RFX3-204ENST00000382004 SPENQ96T58 3664 aaKnown RBP2.41□□□□□ -2.02
RFX3-204ENST00000382004 SMG1Q96Q15 3661 aaKnown RBP2.36□□□□□ -2.03
RFX3-204ENST00000382004 FBN1P35555 2871 aaKnown RBP2.35□□□□□ -2.03
RFX3-204ENST00000382004 KRTAP10-7P60409 375 aaPredicted RBP2.34□□□□□ -2.04
RFX3-204ENST00000382004 CUBNO60494 3623 aa2.32□□□□□ -2.04
RFX3-204ENST00000382004 MUC3AQ02505 3323 aa2.31□□□□□ -2.04
RFX3-204ENST00000382004 SPRR2FQ96RM1 72 aa2.3□□□□□ -2.04
RFX3-204ENST00000382004 OTOGQ6ZRI0 2925 aa2.3□□□□□ -2.04
RFX3-204ENST00000382004 DMDP11532 3685 aa2.29□□□□□ -2.04
RFX3-204ENST00000382004 KRTAP10-4P60372 401 aaPredicted RBP2.28□□□□□ -2.04
RFX3-204ENST00000382004 TRRAPQ9Y4A5 3859 aa2.27□□□□□ -2.05
RFX3-204ENST00000382004 KRTAP19-5Q3LI72 72 aa2.26□□□□□ -2.05
RFX3-204ENST00000382004 CSMD3Q7Z407 3707 aa2.25□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms