RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 HIVEP1P15822 2718 aa8.6□□□□□ -1.03
COL5A1-201ENST00000371817 HTTP42858 3142 aa8.6□□□□□ -1.03
COL5A1-201ENST00000371817 RPS29P62273 56 aaKnown RBP8.59□□□□□ -1.03
COL5A1-201ENST00000371817 CDH23Q9H251 3354 aa8.58□□□□□ -1.04
COL5A1-201ENST00000371817 DMXL1Q9Y485 3027 aa8.58□□□□□ -1.04
COL5A1-201ENST00000371817 P0C880 135 aa8.55□□□□□ -1.04
COL5A1-201ENST00000371817 KRTAP10-1P60331 282 aa8.55□□□□□ -1.04
COL5A1-201ENST00000371817 BOD1L1Q8NFC6 3051 aa8.54□□□□□ -1.04
COL5A1-201ENST00000371817 CELSR2Q9HCU4 2923 aa8.53□□□□□ -1.04
COL5A1-201ENST00000371817 COL6A3P12111 3177 aa8.53□□□□□ -1.04
COL5A1-201ENST00000371817 ZZEF1O43149 2961 aa8.51□□□□□ -1.05
COL5A1-201ENST00000371817 KRTAP10-2P60368 255 aa8.49□□□□□ -1.05
COL5A1-201ENST00000371817 TGP01266 2768 aa8.49□□□□□ -1.05
COL5A1-201ENST00000371817 ATMQ13315 3056 aa8.48□□□□□ -1.05
COL5A1-201ENST00000371817 NF1P21359 2839 aa8.47□□□□□ -1.05
COL5A1-201ENST00000371817 TENM3Q9P273 2699 aa8.46□□□□□ -1.06
COL5A1-201ENST00000371817 H0YAA0 97 aa8.45□□□□□ -1.06
COL5A1-201ENST00000371817 PDZD2O15018 2839 aa8.44□□□□□ -1.06
COL5A1-201ENST00000371817 ADGRG4Q8IZF6 3080 aa8.44□□□□□ -1.06
COL5A1-201ENST00000371817 USP34Q70CQ2 3546 aa8.43□□□□□ -1.06
COL5A1-201ENST00000371817 NIPBLQ6KC79 2804 aaeCLIP8.41□□□□□ -1.06
COL5A1-201ENST00000371817 CFAP47Q6ZTR5 3102 aa8.4□□□□□ -1.06
COL5A1-201ENST00000371817 TENM1Q9UKZ4 2725 aa8.39□□□□□ -1.07
COL5A1-201ENST00000371817 VCANP13611 3396 aa8.39□□□□□ -1.07
COL5A1-201ENST00000371817 SRRM2Q9UQ35 2752 aaKnown RBP8.39□□□□□ -1.07
COL5A1-201ENST00000371817 Q6ZRN7 208 aaPredicted RBP8.34□□□□□ -1.07
COL5A1-201ENST00000371817 KRTAP10-8P60410 259 aa8.32□□□□□ -1.08
COL5A1-201ENST00000371817 SPEGQ15772 3267 aa8.31□□□□□ -1.08
COL5A1-201ENST00000371817 SZT2Q5T011 3432 aa8.29□□□□□ -1.08
COL5A1-201ENST00000371817 KRTAP13-1Q8IUC0 172 aa8.29□□□□□ -1.08
COL5A1-201ENST00000371817 CELSR1Q9NYQ6 3014 aa8.29□□□□□ -1.08
COL5A1-201ENST00000371817 TNRC18O15417 2968 aaPredicted RBP8.28□□□□□ -1.08
COL5A1-201ENST00000371817 KRTAP7-1Q8IUC3 87 aa8.26□□□□□ -1.09
COL5A1-201ENST00000371817 KRTAP13-2Q52LG2 175 aa8.26□□□□□ -1.09
COL5A1-201ENST00000371817 DCHS2Q6V1P9 2916 aa8.25□□□□□ -1.09
COL5A1-201ENST00000371817 FLNCQ14315 2725 aa8.18□□□□□ -1.1
COL5A1-201ENST00000371817 FBN2P35556 2912 aa8.11□□□□□ -1.11
COL5A1-201ENST00000371817 WDFY3Q8IZQ1 3526 aa8.1□□□□□ -1.11
COL5A1-201ENST00000371817 SPTBN5Q9NRC6 3674 aaKnown RBP8.1□□□□□ -1.11
COL5A1-201ENST00000371817 ZANQ9Y493 2812 aa8.04□□□□□ -1.12
COL5A1-201ENST00000371817 MYO15AQ9UKN7 3530 aa8.02□□□□□ -1.13
COL5A1-201ENST00000371817 EYSQ5T1H1 3165 aa8□□□□□ -1.13
COL5A1-201ENST00000371817 KRTAP21-3Q3LHN1 58 aa7.97□□□□□ -1.13
COL5A1-201ENST00000371817 PRO2289Q9P1D8 64 aa7.95□□□□□ -1.14
COL5A1-201ENST00000371817 ASPMQ8IZT6 3477 aa7.91□□□□□ -1.14
COL5A1-201ENST00000371817 ZFHX4Q86UP3 3567 aa7.9□□□□□ -1.14
COL5A1-201ENST00000371817 MXRA5Q9NR99 2828 aa7.89□□□□□ -1.15
COL5A1-201ENST00000371817 VWFP04275 2813 aa7.88□□□□□ -1.15
COL5A1-201ENST00000371817 LOC400499M0QZD8 3231 aa7.88□□□□□ -1.15
COL5A1-201ENST00000371817 ZFHX3Q15911 3703 aa7.88□□□□□ -1.15
COL5A1-201ENST00000371817 XP32Q5T750 250 aa7.86□□□□□ -1.15
COL5A1-201ENST00000371817 KRTAP12-2P59991 146 aa7.81□□□□□ -1.16
COL5A1-201ENST00000371817 NBPF19A0A087WUL8 3843 aa7.81□□□□□ -1.16
COL5A1-201ENST00000371817 PKD1L1Q8TDX9 2849 aa7.81□□□□□ -1.16
COL5A1-201ENST00000371817 LAMA5O15230 3695 aa7.79□□□□□ -1.16
COL5A1-201ENST00000371817 DCHS1Q96JQ0 3298 aa7.79□□□□□ -1.16
COL5A1-201ENST00000371817 A0A1B0GVY2 172 aa7.78□□□□□ -1.16
COL5A1-201ENST00000371817 TENM4Q6N022 2769 aa7.77□□□□□ -1.17
COL5A1-201ENST00000371817 KRTAP13-4Q3LI77 160 aa7.76□□□□□ -1.17
COL5A1-201ENST00000371817 HRNRQ86YZ3 2850 aaPredicted RBP7.74□□□□□ -1.17
COL5A1-201ENST00000371817 INE1O15225 51 aa7.74□□□□□ -1.17
COL5A1-201ENST00000371817 TPRXLQ17RH7 258 aa7.73□□□□□ -1.17
COL5A1-201ENST00000371817 KRTAP1-4P0C5Y4 121 aa7.7□□□□□ -1.18
COL5A1-201ENST00000371817 COL7A1Q02388 2944 aa7.68□□□□□ -1.18
COL5A1-201ENST00000371817 KRTAP10-10P60014 251 aa7.68□□□□□ -1.18
COL5A1-201ENST00000371817 TENM2Q9NT68 2774 aa7.68□□□□□ -1.18
COL5A1-201ENST00000371817 CSMD1Q96PZ7 3565 aa7.65□□□□□ -1.18
COL5A1-201ENST00000371817 RELNP78509 3460 aa7.63□□□□□ -1.19
COL5A1-201ENST00000371817 KRTAP13-3Q3SY46 172 aa7.63□□□□□ -1.19
COL5A1-201ENST00000371817 KRTAP12-1P59990 96 aa7.62□□□□□ -1.19
COL5A1-201ENST00000371817 SMG1Q96Q15 3661 aaKnown RBP7.61□□□□□ -1.19
COL5A1-201ENST00000371817 MEGF8Q7Z7M0 2845 aa7.56□□□□□ -1.2
COL5A1-201ENST00000371817 DMDP11532 3685 aa7.54□□□□□ -1.2
COL5A1-201ENST00000371817 KRTAP15-1Q3LI76 137 aa7.51□□□□□ -1.21
COL5A1-201ENST00000371817 SPENQ96T58 3664 aaKnown RBP7.5□□□□□ -1.21
COL5A1-201ENST00000371817 OTOGQ6ZRI0 2925 aa7.42□□□□□ -1.22
COL5A1-201ENST00000371817 CUBNO60494 3623 aa7.38□□□□□ -1.23
COL5A1-201ENST00000371817 FBN3Q75N90 2809 aa7.35□□□□□ -1.23
COL5A1-201ENST00000371817 SVEP1Q4LDE5 3571 aa7.17□□□□□ -1.26
COL5A1-201ENST00000371817 KRTAP3-1Q9BYR8 98 aa7.17□□□□□ -1.26
COL5A1-201ENST00000371817 FBN1P35555 2871 aaKnown RBP7.17□□□□□ -1.26
COL5A1-201ENST00000371817 KRTAP10-6P60371 365 aaPredicted RBP7.16□□□□□ -1.26
COL5A1-201ENST00000371817 VPS13CQ709C8 3753 aa7.05□□□□□ -1.28
COL5A1-201ENST00000371817 TRRAPQ9Y4A5 3859 aa6.99□□□□□ -1.29
COL5A1-201ENST00000371817 MUC3AQ02505 3323 aa6.98□□□□□ -1.29
COL5A1-201ENST00000371817 CSMD3Q7Z407 3707 aa6.97□□□□□ -1.29
COL5A1-201ENST00000371817 KRTAP10-12P60413 245 aa6.91□□□□□ -1.3
COL5A1-201ENST00000371817 AKAP9Q99996 3911 aa6.91□□□□□ -1.3
COL5A1-201ENST00000371817 KRTAP23-1A1A580 65 aa6.86□□□□□ -1.31
COL5A1-201ENST00000371817 CRCT1Q9UGL9 99 aa6.81□□□□□ -1.32
COL5A1-201ENST00000371817 CSMD2Q7Z408 3487 aa6.8□□□□□ -1.32
COL5A1-201ENST00000371817 BSNQ9UPA5 3926 aa6.8□□□□□ -1.32
COL5A1-201ENST00000371817 KRTAP3-2Q9BYR7 98 aa6.79□□□□□ -1.32
COL5A1-201ENST00000371817 KRTAP12-3P60328 96 aa6.77□□□□□ -1.33
COL5A1-201ENST00000371817 ALMS1Q8TCU4 4167 aa6.73□□□□□ -1.33
COL5A1-201ENST00000371817 KRTAP3-3Q9BYR6 98 aa6.72□□□□□ -1.33
COL5A1-201ENST00000371817 LCE3AQ5TA76 89 aa6.58□□□□□ -1.36
COL5A1-201ENST00000371817 KRTAP10-5P60370 271 aa6.58□□□□□ -1.36
COL5A1-201ENST00000371817 ZNF469Q96JG9 3925 aaPredicted RBP6.38□□□□□ -1.39
COL5A1-201ENST00000371817 ANK3Q12955 4377 aaKnown RBP6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 99.7 ms