RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 PELP1Q8IZL8 1130 aaKnown RBP25.44■■□□□ 1.66
COL5A1-201ENST00000371817 MYT1Q01538 1121 aa24.86■■□□□ 1.57
COL5A1-201ENST00000371817 ERICH6Q7L0X2 663 aa24.36■■□□□ 1.49
COL5A1-201ENST00000371817 DCAF8L2P0C7V8 631 aa24.18■■□□□ 1.46
COL5A1-201ENST00000371817 CCER1Q8TC90 406 aaPredicted RBP24.18■■□□□ 1.46
COL5A1-201ENST00000371817 CENPBP07199 599 aaPredicted RBP23.95■■□□□ 1.43
COL5A1-201ENST00000371817 SUPT5HO00267 1087 aaKnown RBP23.65■■□□□ 1.38
COL5A1-201ENST00000371817 TTBK1Q5TCY1 1321 aaPredicted RBP23.4■■□□□ 1.34
COL5A1-201ENST00000371817 ZEB1P37275 1124 aaPredicted RBP23.35■■□□□ 1.33
COL5A1-201ENST00000371817 YTHDC1Q96MU7 727 aaKnown RBP23.35■■□□□ 1.33
COL5A1-201ENST00000371817 NEFLP07196 543 aa23.33■■□□□ 1.33
COL5A1-201ENST00000371817 PCGF6Q9BYE7 350 aa23.31■■□□□ 1.32
COL5A1-201ENST00000371817 APLP2Q06481 763 aa23.26■■□□□ 1.31
COL5A1-201ENST00000371817 EHMT2Q96KQ7 1210 aa23.24■■□□□ 1.31
COL5A1-201ENST00000371817 DAXXQ9UER7 740 aaPredicted RBP22.97■■□□□ 1.27
COL5A1-201ENST00000371817 SHROOM4Q9ULL8 1493 aa22.73■■□□□ 1.23
COL5A1-201ENST00000371817 RTL5Q5HYW3 569 aaPredicted RBP22.67■■□□□ 1.22
COL5A1-201ENST00000371817 FAM9AQ8IZU1 332 aaPredicted RBP22.47■■□□□ 1.19
COL5A1-201ENST00000371817 ZNF316A6NFI3 1004 aaPredicted RBP22.38■■□□□ 1.17
COL5A1-201ENST00000371817 HRCP23327 699 aa22.22■■□□□ 1.15
COL5A1-201ENST00000371817 GLIPR1L2Q4G1C9 344 aa22.09■■□□□ 1.13
COL5A1-201ENST00000371817 TRIM26Q12899 539 aaPredicted RBP22.06■■□□□ 1.12
COL5A1-201ENST00000371817 RANGAP1P46060 587 aaPredicted RBP21.97■■□□□ 1.11
COL5A1-201ENST00000371817 CLSPNQ9HAW4 1339 aa21.97■■□□□ 1.11
COL5A1-201ENST00000371817 EIF5BO60841 1220 aaKnown RBP21.94■■□□□ 1.1
COL5A1-201ENST00000371817 ATP1B4Q9UN42 357 aaPredicted RBP21.92■■□□□ 1.1
COL5A1-201ENST00000371817 TRIM41Q8WV44 630 aa21.88■■□□□ 1.09
COL5A1-201ENST00000371817 DIEXFQ68CQ4 756 aaKnown RBP21.82■■□□□ 1.08
COL5A1-201ENST00000371817 UBTFP17480 764 aaKnown RBP21.81■■□□□ 1.08
COL5A1-201ENST00000371817 GTF3C3Q9Y5Q9 886 aa21.78■■□□□ 1.08
COL5A1-201ENST00000371817 CDK11AQ9UQ88 783 aaPredicted RBP21.78■■□□□ 1.08
COL5A1-201ENST00000371817 NISCHQ9Y2I1 1504 aa21.73■■□□□ 1.07
COL5A1-201ENST00000371817 POLR3GLQ9BT43 218 aa21.69■■□□□ 1.06
COL5A1-201ENST00000371817 PPARGC1BQ86YN6 1023 aaKnown RBP21.63■■□□□ 1.05
COL5A1-201ENST00000371817 MYT1LQ9UL68 1186 aa21.58■■□□□ 1.05
COL5A1-201ENST00000371817 BCANQ96GW7 911 aa21.55■■□□□ 1.04
COL5A1-201ENST00000371817 ANP32AP39687 249 aaKnown RBP21.55■■□□□ 1.04
COL5A1-201ENST00000371817 ANP32BQ92688 251 aaKnown RBP21.51■■□□□ 1.03
COL5A1-201ENST00000371817 CNGB1Q14028 1251 aaPredicted RBP21.48■■□□□ 1.03
COL5A1-201ENST00000371817 ITGAEP38570 1179 aa21.32■■□□□ 1
COL5A1-201ENST00000371817 ZBTB47Q9UFB7 747 aaPredicted RBP21.31■■□□□ 1
COL5A1-201ENST00000371817 ACIN1Q9UKV3 1341 aaKnown RBP21.3■■□□□ 1
COL5A1-201ENST00000371817 HNRNPUL2Q1KMD3 747 aaKnown RBP21.24■□□□□ 0.99
COL5A1-201ENST00000371817 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.22■□□□□ 0.99
COL5A1-201ENST00000371817 SLC4A1APQ9BWU0 796 aaKnown RBP21.22■□□□□ 0.99
COL5A1-201ENST00000371817 ANP32CO43423 234 aa21.18■□□□□ 0.98
COL5A1-201ENST00000371817 NPM2Q86SE8 214 aaKnown RBP21.14■□□□□ 0.98
COL5A1-201ENST00000371817 TNNT2P45379 298 aaPredicted RBP21.13■□□□□ 0.97
COL5A1-201ENST00000371817 NBR1Q14596 966 aa21.08■□□□□ 0.97
COL5A1-201ENST00000371817 HSP90AA1P07900 732 aaKnown RBP21.06■□□□□ 0.96
COL5A1-201ENST00000371817 CANXP27824 592 aaKnown RBP21.05■□□□□ 0.96
COL5A1-201ENST00000371817 UPF2Q9HAU5 1272 aaKnown RBP20.96■□□□□ 0.95
COL5A1-201ENST00000371817 LOC105371045A0A1W2PR82 267 aa20.95■□□□□ 0.94
COL5A1-201ENST00000371817 BCL11AQ9H165 835 aa20.88■□□□□ 0.93
COL5A1-201ENST00000371817 FKBP8Q14318 412 aa20.86■□□□□ 0.93
COL5A1-201ENST00000371817 ARXQ96QS3 562 aa20.85■□□□□ 0.93
COL5A1-201ENST00000371817 CDK11BP21127 795 aaKnown RBP20.82■□□□□ 0.92
COL5A1-201ENST00000371817 TRIM44Q96DX7 344 aaPredicted RBP20.8■□□□□ 0.92
COL5A1-201ENST00000371817 NEUROD1Q13562 356 aa20.78■□□□□ 0.92
COL5A1-201ENST00000371817 CHIC1Q5VXU3 224 aa20.72■□□□□ 0.91
COL5A1-201ENST00000371817 ANP32EQ9BTT0 268 aa20.7■□□□□ 0.9
COL5A1-201ENST00000371817 ERICH6BQ5W0A0 696 aa20.67■□□□□ 0.9
COL5A1-201ENST00000371817 NEFMP07197 916 aa20.65■□□□□ 0.9
COL5A1-201ENST00000371817 FAM50AQ14320 339 aaKnown RBP20.65■□□□□ 0.9
COL5A1-201ENST00000371817 SLC24A1O60721 1099 aa20.61■□□□□ 0.89
COL5A1-201ENST00000371817 SCAF1Q9H7N4 1312 aaKnown RBP20.61■□□□□ 0.89
COL5A1-201ENST00000371817 TRIM52Q96A61 297 aa20.6■□□□□ 0.89
COL5A1-201ENST00000371817 NAP1L5Q96NT1 182 aaPredicted RBP20.59■□□□□ 0.89
COL5A1-201ENST00000371817 NCLP19338 710 aaKnown RBP20.59■□□□□ 0.89
COL5A1-201ENST00000371817 CCDC136Q96JN2 1154 aa20.58■□□□□ 0.88
COL5A1-201ENST00000371817 DDRGK1Q96HY6 314 aa20.53■□□□□ 0.88
COL5A1-201ENST00000371817 ZNF326Q5BKZ1 582 aaKnown RBP20.51■□□□□ 0.87
COL5A1-201ENST00000371817 DNTTIP2Q5QJE6 756 aaKnown RBP20.5■□□□□ 0.87
COL5A1-201ENST00000371817 HNRNPUQ00839 825 aaKnown RBP eCLIP20.48■□□□□ 0.87
COL5A1-201ENST00000371817 BECN1Q14457 450 aa20.48■□□□□ 0.87
COL5A1-201ENST00000371817 RTN4Q9NQC3 1192 aaKnown RBP20.48■□□□□ 0.87
COL5A1-201ENST00000371817 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.44■□□□□ 0.86
COL5A1-201ENST00000371817 GOLGA6L22H0YM25 854 aa20.42■□□□□ 0.86
COL5A1-201ENST00000371817 PTMAP06454 111 aaKnown RBP20.4■□□□□ 0.86
COL5A1-201ENST00000371817 AMER1Q5JTC6 1135 aaPredicted RBP20.36■□□□□ 0.85
COL5A1-201ENST00000371817 PPM1GO15355 546 aaPredicted RBP20.3■□□□□ 0.84
COL5A1-201ENST00000371817 FAM9BQ8IZU0 186 aa20.27■□□□□ 0.84
COL5A1-201ENST00000371817 CHAF1AQ13111 956 aaPredicted RBP20.2■□□□□ 0.82
COL5A1-201ENST00000371817 ZRSR1Q15695 479 aaKnown RBP20.19■□□□□ 0.82
COL5A1-201ENST00000371817 NOP58Q9Y2X3 529 aaKnown RBP20.17■□□□□ 0.82
COL5A1-201ENST00000371817 TMC1Q8TDI8 760 aa20.13■□□□□ 0.81
COL5A1-201ENST00000371817 MYH16Q9H6N6 1097 aa20.13■□□□□ 0.81
COL5A1-201ENST00000371817 DEKP35659 375 aaKnown RBP20.13■□□□□ 0.81
COL5A1-201ENST00000371817 IRX6P78412 446 aaPredicted RBP20.13■□□□□ 0.81
COL5A1-201ENST00000371817 DDX10Q13206 875 aaKnown RBP20.13■□□□□ 0.81
COL5A1-201ENST00000371817 MSNP26038 577 aaKnown RBP20.12■□□□□ 0.81
COL5A1-201ENST00000371817 SALL2Q9Y467 1007 aaPredicted RBP20.11■□□□□ 0.81
COL5A1-201ENST00000371817 TNNT3P45378 269 aaPredicted RBP20.09■□□□□ 0.81
COL5A1-201ENST00000371817 TONSLQ96HA7 1378 aa20.09■□□□□ 0.81
COL5A1-201ENST00000371817 GOLGA6L6A8MZA4 724 aa20.09■□□□□ 0.81
COL5A1-201ENST00000371817 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.06■□□□□ 0.8
COL5A1-201ENST00000371817 LAS1LQ9Y4W2 734 aaKnown RBP20.06■□□□□ 0.8
COL5A1-201ENST00000371817 L1TD1Q5T7N2 865 aaKnown RBP20.06■□□□□ 0.8
COL5A1-201ENST00000371817 NRDCO43847 1150 aa20.03■□□□□ 0.8
COL5A1-201ENST00000371817 WDR43Q15061 677 aaKnown RBP eCLIP19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms