RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 HIVEP1P15822 2718 aa7.98□□□□□ -1.13
CHD4-201ENST00000357008 PP632Q6XCG6 107 aa7.96□□□□□ -1.13
CHD4-201ENST00000357008 ATMQ13315 3056 aa7.94□□□□□ -1.14
CHD4-201ENST00000357008 H0YAA0 97 aa7.94□□□□□ -1.14
CHD4-201ENST00000357008 NIPBLQ6KC79 2804 aaeCLIP7.93□□□□□ -1.147e-7■■□□□ 12
CHD4-201ENST00000357008 CELSR3Q9NYQ7 3312 aa7.93□□□□□ -1.14
CHD4-201ENST00000357008 KRTAP1-4P0C5Y4 121 aa7.9□□□□□ -1.14
CHD4-201ENST00000357008 ADGRG4Q8IZF6 3080 aa7.88□□□□□ -1.15
CHD4-201ENST00000357008 LRBAP50851 2863 aa7.87□□□□□ -1.15
CHD4-201ENST00000357008 COL12A1Q99715 3063 aa7.87□□□□□ -1.15
CHD4-201ENST00000357008 P0C880 135 aa7.84□□□□□ -1.15
CHD4-201ENST00000357008 XP32Q5T750 250 aa7.84□□□□□ -1.16
CHD4-201ENST00000357008 CELSR2Q9HCU4 2923 aa7.83□□□□□ -1.16
CHD4-201ENST00000357008 FRYLO94915 3013 aa7.78□□□□□ -1.16
CHD4-201ENST00000357008 TENM4Q6N022 2769 aa7.77□□□□□ -1.17
CHD4-201ENST00000357008 LAMA1P25391 3075 aa7.75□□□□□ -1.17
CHD4-201ENST00000357008 CDH23Q9H251 3354 aa7.75□□□□□ -1.17
CHD4-201ENST00000357008 REV3LO60673 3130 aa7.74□□□□□ -1.17
CHD4-201ENST00000357008 BOD1L1Q8NFC6 3051 aa7.73□□□□□ -1.17
CHD4-201ENST00000357008 KRTAP10-8P60410 259 aa7.72□□□□□ -1.17
CHD4-201ENST00000357008 ZZEF1O43149 2961 aa7.71□□□□□ -1.17
CHD4-201ENST00000357008 DCHS2Q6V1P9 2916 aa7.71□□□□□ -1.17
CHD4-201ENST00000357008 VCANP13611 3396 aa7.71□□□□□ -1.18
CHD4-201ENST00000357008 KRTAP21-3Q3LHN1 58 aa7.66□□□□□ -1.18
CHD4-201ENST00000357008 CRYBG3Q68DQ2 2970 aa7.65□□□□□ -1.19
CHD4-201ENST00000357008 TPRXLQ17RH7 258 aa7.64□□□□□ -1.19
CHD4-201ENST00000357008 ZANQ9Y493 2812 aa7.63□□□□□ -1.19
CHD4-201ENST00000357008 KRTAP13-3Q3SY46 172 aa7.62□□□□□ -1.19
CHD4-201ENST00000357008 COL6A3P12111 3177 aa7.61□□□□□ -1.19
CHD4-201ENST00000357008 A0A1B0GVY2 172 aa7.6□□□□□ -1.19
CHD4-201ENST00000357008 DNAH14Q0VDD8 3507 aa7.6□□□□□ -1.19
CHD4-201ENST00000357008 CFAP47Q6ZTR5 3102 aa7.59□□□□□ -1.19
CHD4-201ENST00000357008 TENM3Q9P273 2699 aa7.57□□□□□ -1.2
CHD4-201ENST00000357008 SZT2Q5T011 3432 aa7.55□□□□□ -1.2
CHD4-201ENST00000357008 TGP01266 2768 aa7.52□□□□□ -1.21
CHD4-201ENST00000357008 EYSQ5T1H1 3165 aa7.5□□□□□ -1.21
CHD4-201ENST00000357008 TNRC18O15417 2968 aaPredicted RBP7.48□□□□□ -1.21
CHD4-201ENST00000357008 HRNRQ86YZ3 2850 aaPredicted RBP7.48□□□□□ -1.21
CHD4-201ENST00000357008 TENM1Q9UKZ4 2725 aa7.47□□□□□ -1.21
CHD4-201ENST00000357008 FBN2P35556 2912 aa7.47□□□□□ -1.21
CHD4-201ENST00000357008 NF1P21359 2839 aa7.46□□□□□ -1.22
CHD4-201ENST00000357008 KRTAP10-10P60014 251 aa7.46□□□□□ -1.22
CHD4-201ENST00000357008 PRO2289Q9P1D8 64 aa7.43□□□□□ -1.22
CHD4-201ENST00000357008 KRTAP12-2P59991 146 aa7.4□□□□□ -1.22
CHD4-201ENST00000357008 CELSR1Q9NYQ6 3014 aa7.31□□□□□ -1.24
CHD4-201ENST00000357008 KRTAP13-4Q3LI77 160 aa7.3□□□□□ -1.24
CHD4-201ENST00000357008 TENM2Q9NT68 2774 aa7.3□□□□□ -1.24
CHD4-201ENST00000357008 SPEGQ15772 3267 aa7.29□□□□□ -1.24
CHD4-201ENST00000357008 KRTAP12-1P59990 96 aa7.29□□□□□ -1.24
CHD4-201ENST00000357008 DMXL1Q9Y485 3027 aa7.28□□□□□ -1.24
CHD4-201ENST00000357008 USP34Q70CQ2 3546 aa7.26□□□□□ -1.25
CHD4-201ENST00000357008 KRTAP3-1Q9BYR8 98 aa7.22□□□□□ -1.25
CHD4-201ENST00000357008 MXRA5Q9NR99 2828 aa7.19□□□□□ -1.26
CHD4-201ENST00000357008 PDZD2O15018 2839 aa7.19□□□□□ -1.26
CHD4-201ENST00000357008 LOC400499M0QZD8 3231 aa7.14□□□□□ -1.27
CHD4-201ENST00000357008 PKD1L1Q8TDX9 2849 aa7.12□□□□□ -1.27
CHD4-201ENST00000357008 KRTAP10-6P60371 365 aaPredicted RBP7.07□□□□□ -1.28
CHD4-201ENST00000357008 SPTBN5Q9NRC6 3674 aaKnown RBP7.06□□□□□ -1.28
CHD4-201ENST00000357008 VWFP04275 2813 aa7.04□□□□□ -1.28
CHD4-201ENST00000357008 MYO15AQ9UKN7 3530 aa7.02□□□□□ -1.29
CHD4-201ENST00000357008 KRTAP15-1Q3LI76 137 aa6.93□□□□□ -1.3
CHD4-201ENST00000357008 WDFY3Q8IZQ1 3526 aa6.89□□□□□ -1.31
CHD4-201ENST00000357008 DCHS1Q96JQ0 3298 aa6.84□□□□□ -1.31
CHD4-201ENST00000357008 RELNP78509 3460 aa6.81□□□□□ -1.32
CHD4-201ENST00000357008 FBN3Q75N90 2809 aa6.8□□□□□ -1.32
CHD4-201ENST00000357008 KRTAP3-2Q9BYR7 98 aa6.8□□□□□ -1.32
CHD4-201ENST00000357008 INE1O15225 51 aa6.78□□□□□ -1.32
CHD4-201ENST00000357008 FBN1P35555 2871 aaKnown RBP6.78□□□□□ -1.32
CHD4-201ENST00000357008 SRRM2Q9UQ35 2752 aaKnown RBP6.77□□□□□ -1.33
CHD4-201ENST00000357008 MEGF8Q7Z7M0 2845 aa6.76□□□□□ -1.33
CHD4-201ENST00000357008 KRTAP3-3Q9BYR6 98 aa6.75□□□□□ -1.33
CHD4-201ENST00000357008 ZFHX4Q86UP3 3567 aa6.64□□□□□ -1.35
CHD4-201ENST00000357008 MT1HL1P0DM35 61 aa6.63□□□□□ -1.35
CHD4-201ENST00000357008 COL7A1Q02388 2944 aa6.6□□□□□ -1.35
CHD4-201ENST00000357008 OTOGQ6ZRI0 2925 aa6.59□□□□□ -1.35
CHD4-201ENST00000357008 CSMD1Q96PZ7 3565 aa6.58□□□□□ -1.36
CHD4-201ENST00000357008 KRTAP10-12P60413 245 aa6.58□□□□□ -1.36
CHD4-201ENST00000357008 ASPMQ8IZT6 3477 aa6.54□□□□□ -1.36
CHD4-201ENST00000357008 KRTAP23-1A1A580 65 aa6.53□□□□□ -1.36
CHD4-201ENST00000357008 NBPF19A0A087WUL8 3843 aa6.51□□□□□ -1.37
CHD4-201ENST00000357008 MUC3AQ02505 3323 aa6.49□□□□□ -1.37
CHD4-201ENST00000357008 KRTAP10-4P60372 401 aaPredicted RBP6.46□□□□□ -1.37
CHD4-201ENST00000357008 KRTAP12-3P60328 96 aa6.45□□□□□ -1.38
CHD4-201ENST00000357008 LAMA5O15230 3695 aa6.45□□□□□ -1.38
CHD4-201ENST00000357008 ANK3Q12955 4377 aaKnown RBP6.43□□□□□ -1.38
CHD4-201ENST00000357008 ZFHX3Q15911 3703 aa6.38□□□□□ -1.39
CHD4-201ENST00000357008 SMG1Q96Q15 3661 aaKnown RBP6.38□□□□□ -1.39
CHD4-201ENST00000357008 LCE3AQ5TA76 89 aa6.36□□□□□ -1.39
CHD4-201ENST00000357008 CRCT1Q9UGL9 99 aa6.35□□□□□ -1.39
CHD4-201ENST00000357008 LORP23490 312 aaPredicted RBP6.29□□□□□ -1.4
CHD4-201ENST00000357008 DMDP11532 3685 aa6.27□□□□□ -1.4
CHD4-201ENST00000357008 TRRAPQ9Y4A5 3859 aa6.27□□□□□ -1.41
CHD4-201ENST00000357008 SVEP1Q4LDE5 3571 aa6.26□□□□□ -1.41
CHD4-201ENST00000357008 KRTAP4-5Q9BYR2 181 aa6.23□□□□□ -1.41
CHD4-201ENST00000357008 CUBNO60494 3623 aa6.22□□□□□ -1.41
CHD4-201ENST00000357008 CSMD2Q7Z408 3487 aa6.18□□□□□ -1.42
CHD4-201ENST00000357008 HUWE1Q7Z6Z7 4374 aaKnown RBP6.16□□□□□ -1.42
CHD4-201ENST00000357008 SPENQ96T58 3664 aaKnown RBP6.13□□□□□ -1.43
CHD4-201ENST00000357008 KRTAP10-5P60370 271 aa6.03□□□□□ -1.44
CHD4-201ENST00000357008 ALMS1Q8TCU4 4167 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms