RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 MRPL34Q9BQ48 92 aaKnown RBP13.07□□□□□ -0.32
SHMT1-201ENST00000316694 LIMD2Q9BT23 127 aa13.07□□□□□ -0.32
SHMT1-201ENST00000316694 DNAH8Q96JB1 4490 aa13.07□□□□□ -0.32
SHMT1-201ENST00000316694 FBN3Q75N90 2809 aa13.07□□□□□ -0.32
SHMT1-201ENST00000316694 PRR15LQ9BU68 103 aa13.07□□□□□ -0.32
SHMT1-201ENST00000316694 SPINK6Q6UWN8 80 aa13.05□□□□□ -0.32
SHMT1-201ENST00000316694 DNAH17Q9UFH2 4485 aa13.04□□□□□ -0.32
SHMT1-201ENST00000316694 CHKB-CPT1BH3BT56 60 aa13.03□□□□□ -0.32
SHMT1-201ENST00000316694 A8MU10 97 aa13.01□□□□□ -0.33
SHMT1-201ENST00000316694 CIRBP-AS1Q8TBR5 109 aa12.98□□□□□ -0.33
SHMT1-201ENST00000316694 DNHD1Q96M86 4753 aa12.96□□□□□ -0.33
SHMT1-201ENST00000316694 IGLV7-43P04211 117 aa12.96□□□□□ -0.33
SHMT1-201ENST00000316694 C1orf134Q5TEV5 83 aa12.93□□□□□ -0.34
SHMT1-201ENST00000316694 SPAG11AQ6PDA7 123 aa12.91□□□□□ -0.34
SHMT1-201ENST00000316694 DNAH6Q9C0G6 4158 aa12.91□□□□□ -0.34
SHMT1-201ENST00000316694 HRES1P13985 223 aa12.89□□□□□ -0.35
SHMT1-201ENST00000316694 Q5W150 140 aa12.89□□□□□ -0.35
SHMT1-201ENST00000316694 LOC101927531A0A1B0GV80 90 aa12.88□□□□□ -0.35
SHMT1-201ENST00000316694 Q75L30 129 aa12.88□□□□□ -0.35
SHMT1-201ENST00000316694 LY6G6CO95867 125 aa12.87□□□□□ -0.35
SHMT1-201ENST00000316694 A6NED7 52 aa12.86□□□□□ -0.35
SHMT1-201ENST00000316694 PMAIP1Q13794 54 aa12.84□□□□□ -0.35
SHMT1-201ENST00000316694 ALMS1Q8TCU4 4167 aa12.82□□□□□ -0.36
SHMT1-201ENST00000316694 DNAH11Q96DT5 4516 aa12.81□□□□□ -0.36
SHMT1-201ENST00000316694 LINC01558Q9Y6Z2 57 aa12.81□□□□□ -0.36
SHMT1-201ENST00000316694 KRTAP13-3Q3SY46 172 aa12.8□□□□□ -0.36
SHMT1-201ENST00000316694 LCA10Q71F78 164 aa12.8□□□□□ -0.36
SHMT1-201ENST00000316694 SSBP3-AS1Q7Z2R9 100 aa12.79□□□□□ -0.36
SHMT1-201ENST00000316694 DNAH5Q8TE73 4624 aa12.79□□□□□ -0.36
SHMT1-201ENST00000316694 SPTSSBQ8NFR3 76 aa12.79□□□□□ -0.36
SHMT1-201ENST00000316694 KRTAP10-2P60368 255 aa12.76□□□□□ -0.37
SHMT1-201ENST00000316694 C8orf87E5RJ46 101 aa12.74□□□□□ -0.37
SHMT1-201ENST00000316694 PRR26Q8N8Z3 221 aa12.72□□□□□ -0.37
SHMT1-201ENST00000316694 LINC00313P59037 77 aa12.71□□□□□ -0.37
SHMT1-201ENST00000316694 RETNLBQ9BQ08 111 aa12.71□□□□□ -0.37
SHMT1-201ENST00000316694 CDC42SE1Q9NRR8 79 aa12.67□□□□□ -0.38
SHMT1-201ENST00000316694 KRTAP13-2Q52LG2 175 aa12.67□□□□□ -0.38
SHMT1-201ENST00000316694 ATP11AUNQ6ZP68 121 aa12.67□□□□□ -0.38
SHMT1-201ENST00000316694 HYDINQ4G0P3 5121 aa12.67□□□□□ -0.38
SHMT1-201ENST00000316694 ACYP2P14621 99 aa12.65□□□□□ -0.38
SHMT1-201ENST00000316694 SPINK7P58062 85 aa12.64□□□□□ -0.39
SHMT1-201ENST00000316694 LRP1BQ9NZR2 4599 aa12.63□□□□□ -0.39
SHMT1-201ENST00000316694 FAM229AH3BQW9 127 aa12.62□□□□□ -0.39
SHMT1-201ENST00000316694 PKD1P98161 4303 aa12.62□□□□□ -0.39
SHMT1-201ENST00000316694 SEC61GP60059 68 aa12.58□□□□□ -0.4
SHMT1-201ENST00000316694 KRTAP10-1P60331 282 aa12.57□□□□□ -0.4
SHMT1-201ENST00000316694 DMAC1Q96GE9 116 aa12.57□□□□□ -0.4
SHMT1-201ENST00000316694 FAT2Q9NYQ8 4349 aa12.56□□□□□ -0.4
SHMT1-201ENST00000316694 IGKV2-30P06310 120 aa12.53□□□□□ -0.4
SHMT1-201ENST00000316694 Q6ZSA8 131 aa12.52□□□□□ -0.41
SHMT1-201ENST00000316694 A6NN06 94 aa12.51□□□□□ -0.41
SHMT1-201ENST00000316694 KRTAP16-1A8MUX0 517 aa12.5□□□□□ -0.41
SHMT1-201ENST00000316694 KTN1-AS1Q86SY8 53 aa12.5□□□□□ -0.41
SHMT1-201ENST00000316694 VPS13BQ7Z7G8 4022 aa12.49□□□□□ -0.41
SHMT1-201ENST00000316694 KRTAP1-4P0C5Y4 121 aa12.48□□□□□ -0.41
SHMT1-201ENST00000316694 IGKV2D-30A0A075B6S6 120 aa12.45□□□□□ -0.42
SHMT1-201ENST00000316694 C4orf48Q5BLP8 95 aa12.4□□□□□ -0.42
SHMT1-201ENST00000316694 PLA2G1BP04054 148 aaKnown RBP12.4□□□□□ -0.42
SHMT1-201ENST00000316694 A0A1B0GU69 56 aa12.38□□□□□ -0.43
SHMT1-201ENST00000316694 TYMSOSQ8TAI1 123 aa12.37□□□□□ -0.43
SHMT1-201ENST00000316694 PKHD1P08F94 4074 aa12.33□□□□□ -0.44
SHMT1-201ENST00000316694 C7orf65Q6ZTY9 151 aa12.32□□□□□ -0.44
SHMT1-201ENST00000316694 SPINK1P00995 79 aa12.29□□□□□ -0.44
SHMT1-201ENST00000316694 RBM12B-AS1Q9P1G2 102 aa12.25□□□□□ -0.45
SHMT1-201ENST00000316694 SACSQ9NZJ4 4579 aa12.19□□□□□ -0.46
SHMT1-201ENST00000316694 LINC00304Q8N9R0 145 aa12.18□□□□□ -0.46
SHMT1-201ENST00000316694 Q8N1X5 172 aa12.16□□□□□ -0.46
SHMT1-201ENST00000316694 SPATA8Q6RVD6 105 aa12.16□□□□□ -0.46
SHMT1-201ENST00000316694 UQCR11O14957 56 aa12.15□□□□□ -0.46
SHMT1-201ENST00000316694 MIR22HGQ0VDD5 57 aa12.14□□□□□ -0.47
SHMT1-201ENST00000316694 SMR3BP02814 79 aaPredicted RBP12.1□□□□□ -0.47
SHMT1-201ENST00000316694 DYNC1H1Q14204 4646 aaKnown RBP12.07□□□□□ -0.48
SHMT1-201ENST00000316694 RPS29P62273 56 aaKnown RBP12.05□□□□□ -0.48
SHMT1-201ENST00000316694 C9orf92A6NGG3 77 aa12.04□□□□□ -0.48
SHMT1-201ENST00000316694 FAT1Q14517 4588 aa12.02□□□□□ -0.48
SHMT1-201ENST00000316694 PRAC1Q96KF2 57 aa12.02□□□□□ -0.49
SHMT1-201ENST00000316694 ADM2Q7Z4H4 148 aa11.99□□□□□ -0.49
SHMT1-201ENST00000316694 KRTAP21-3Q3LHN1 58 aa11.96□□□□□ -0.5
SHMT1-201ENST00000316694 APOBP04114 4563 aaKnown RBP11.92□□□□□ -0.5
SHMT1-201ENST00000316694 A8MUU9 505 aa11.9□□□□□ -0.5
SHMT1-201ENST00000316694 C20orf166-AS1Q96NR2 134 aa11.89□□□□□ -0.51
SHMT1-201ENST00000316694 A0A1B0GVY2 172 aa11.87□□□□□ -0.51
SHMT1-201ENST00000316694 KRTAP10-4P60372 401 aaPredicted RBP11.85□□□□□ -0.51
SHMT1-201ENST00000316694 PKHD1L1Q86WI1 4243 aa11.85□□□□□ -0.51
SHMT1-201ENST00000316694 KRTAP3-1Q9BYR8 98 aa11.82□□□□□ -0.52
SHMT1-201ENST00000316694 RYR2Q92736 4967 aa11.76□□□□□ -0.53
SHMT1-201ENST00000316694 KMT2CQ8NEZ4 4911 aaKnown RBP11.74□□□□□ -0.53
SHMT1-201ENST00000316694 H0YAA0 97 aa11.73□□□□□ -0.53
SHMT1-201ENST00000316694 A0A1B0GU33 70 aa11.67□□□□□ -0.54
SHMT1-201ENST00000316694 FLG2Q5D862 2391 aaPredicted RBP11.64□□□□□ -0.55
SHMT1-201ENST00000316694 CSAG1Q6PB30 78 aa11.64□□□□□ -0.55
SHMT1-201ENST00000316694 H1FX-AS1Q4G0G2 97 aa11.61□□□□□ -0.55
SHMT1-201ENST00000316694 LINC01554Q52M75 96 aa11.61□□□□□ -0.55
SHMT1-201ENST00000316694 LRP1Q07954 4544 aaKnown RBP11.6□□□□□ -0.55
SHMT1-201ENST00000316694 COX6B2Q6YFQ2 88 aa11.59□□□□□ -0.55
SHMT1-201ENST00000316694 TNXBP22105 4242 aa11.51□□□□□ -0.57
SHMT1-201ENST00000316694 FAT3Q8TDW7 4589 aa11.5□□□□□ -0.57
SHMT1-201ENST00000316694 HSPG2P98160 4391 aa11.44□□□□□ -0.58
SHMT1-201ENST00000316694 DMBT1Q9UGM3 2413 aaPredicted RBP11.39□□□□□ -0.59
SHMT1-201ENST00000316694 KRTAP10-8P60410 259 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms