RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 ADGRG4Q8IZF6 3080 aa5.13□□□□□ -1.59
USF3-201ENST00000316407 KRTAP1-5Q9BYS1 174 aa5.13□□□□□ -1.59
USF3-201ENST00000316407 CRYBG3Q68DQ2 2970 aa5.12□□□□□ -1.59
USF3-201ENST00000316407 CELSR2Q9HCU4 2923 aa5.12□□□□□ -1.59
USF3-201ENST00000316407 KRTAP29-1A8MX34 341 aaPredicted RBP5.12□□□□□ -1.59
USF3-201ENST00000316407 ATMQ13315 3056 aa5.12□□□□□ -1.59
USF3-201ENST00000316407 SEC61BP60468 96 aaKnown RBP5.11□□□□□ -1.59
USF3-201ENST00000316407 C10orf95Q9H7T3 257 aa5.11□□□□□ -1.59
USF3-201ENST00000316407 A8MUU9 505 aa5.11□□□□□ -1.59
USF3-201ENST00000316407 FLNCQ14315 2725 aa5.09□□□□□ -1.59
USF3-201ENST00000316407 SPRR1BP22528 89 aa5.08□□□□□ -1.6
USF3-201ENST00000316407 DMXL1Q9Y485 3027 aa5.07□□□□□ -1.6
USF3-201ENST00000316407 KRTAP1-3Q8IUG1 177 aa5.07□□□□□ -1.6
USF3-201ENST00000316407 NF1P21359 2839 aa5.06□□□□□ -1.6
USF3-201ENST00000316407 KRTAP1-1Q07627 177 aa5.05□□□□□ -1.6
USF3-201ENST00000316407 KRTAP4-16G5E9R7 235 aaPredicted RBP5.04□□□□□ -1.6
USF3-201ENST00000316407 TGP01266 2768 aa5.03□□□□□ -1.6
USF3-201ENST00000316407 TENM1Q9UKZ4 2725 aa5.03□□□□□ -1.6
USF3-201ENST00000316407 RELNP78509 3460 aa5.02□□□□□ -1.61
USF3-201ENST00000316407 KRTAP10-2P60368 255 aa5.01□□□□□ -1.61
USF3-201ENST00000316407 NIPBLQ6KC79 2804 aaeCLIP5□□□□□ -1.61
USF3-201ENST00000316407 TNRC18O15417 2968 aaPredicted RBP5□□□□□ -1.61
USF3-201ENST00000316407 PDZD2O15018 2839 aa5□□□□□ -1.61
USF3-201ENST00000316407 Q5VSD8 79 aa4.99□□□□□ -1.61
USF3-201ENST00000316407 LAMA5O15230 3695 aa4.99□□□□□ -1.61
USF3-201ENST00000316407 SRRM2Q9UQ35 2752 aaKnown RBP4.98□□□□□ -1.61
USF3-201ENST00000316407 ZFHX4Q86UP3 3567 aa4.98□□□□□ -1.61
USF3-201ENST00000316407 SMG1Q96Q15 3661 aaKnown RBP4.97□□□□□ -1.61
USF3-201ENST00000316407 LCE6AA0A183 80 aa4.97□□□□□ -1.61
USF3-201ENST00000316407 KRTAP11-1Q8IUC1 163 aa4.97□□□□□ -1.61
USF3-201ENST00000316407 KRTAP10-1P60331 282 aa4.96□□□□□ -1.62
USF3-201ENST00000316407 SPENQ96T58 3664 aaKnown RBP4.95□□□□□ -1.62
USF3-201ENST00000316407 DMDP11532 3685 aa4.95□□□□□ -1.62
USF3-201ENST00000316407 ZANQ9Y493 2812 aa4.95□□□□□ -1.62
USF3-201ENST00000316407 DCHS1Q96JQ0 3298 aa4.94□□□□□ -1.62
USF3-201ENST00000316407 TENM3Q9P273 2699 aa4.93□□□□□ -1.62
USF3-201ENST00000316407 LOC400499M0QZD8 3231 aa4.93□□□□□ -1.62
USF3-201ENST00000316407 CELSR1Q9NYQ6 3014 aa4.93□□□□□ -1.62
USF3-201ENST00000316407 FBN2P35556 2912 aa4.93□□□□□ -1.62
USF3-201ENST00000316407 CSMD1Q96PZ7 3565 aa4.92□□□□□ -1.62
USF3-201ENST00000316407 DCHS2Q6V1P9 2916 aa4.91□□□□□ -1.62
USF3-201ENST00000316407 EYSQ5T1H1 3165 aa4.88□□□□□ -1.63
USF3-201ENST00000316407 VWFP04275 2813 aa4.87□□□□□ -1.63
USF3-201ENST00000316407 CUBNO60494 3623 aa4.85□□□□□ -1.63
USF3-201ENST00000316407 H0YAA0 97 aa4.85□□□□□ -1.63
USF3-201ENST00000316407 HRNRQ86YZ3 2850 aaPredicted RBP4.84□□□□□ -1.63
USF3-201ENST00000316407 MXRA5Q9NR99 2828 aa4.83□□□□□ -1.64
USF3-201ENST00000316407 TNP1P09430 55 aa4.83□□□□□ -1.64
USF3-201ENST00000316407 KRTAP7-1Q8IUC3 87 aa4.82□□□□□ -1.64
USF3-201ENST00000316407 KRTAP13-2Q52LG2 175 aa4.8□□□□□ -1.64
USF3-201ENST00000316407 KRTAP10-8P60410 259 aa4.78□□□□□ -1.64
USF3-201ENST00000316407 P0C880 135 aa4.78□□□□□ -1.64
USF3-201ENST00000316407 SVEP1Q4LDE5 3571 aa4.75□□□□□ -1.65
USF3-201ENST00000316407 PKD1L1Q8TDX9 2849 aa4.73□□□□□ -1.65
USF3-201ENST00000316407 ZFHX3Q15911 3703 aa4.73□□□□□ -1.65
USF3-201ENST00000316407 NBPF19A0A087WUL8 3843 aa4.7□□□□□ -1.66
USF3-201ENST00000316407 KRTAP13-1Q8IUC0 172 aa4.7□□□□□ -1.66
USF3-201ENST00000316407 Q6ZRN7 208 aaPredicted RBP4.7□□□□□ -1.66
USF3-201ENST00000316407 PP632Q6XCG6 107 aa4.69□□□□□ -1.66
USF3-201ENST00000316407 RPS29P62273 56 aaKnown RBP4.68□□□□□ -1.66
USF3-201ENST00000316407 A0A1B0GVY2 172 aa4.65□□□□□ -1.67
USF3-201ENST00000316407 TENM4Q6N022 2769 aa4.63□□□□□ -1.67
USF3-201ENST00000316407 MUC3AQ02505 3323 aa4.59□□□□□ -1.67
USF3-201ENST00000316407 TENM2Q9NT68 2774 aa4.56□□□□□ -1.68
USF3-201ENST00000316407 COL7A1Q02388 2944 aa4.56□□□□□ -1.68
USF3-201ENST00000316407 KRTAP12-2P59991 146 aa4.53□□□□□ -1.68
USF3-201ENST00000316407 XP32Q5T750 250 aa4.52□□□□□ -1.69
USF3-201ENST00000316407 TPRXLQ17RH7 258 aa4.47□□□□□ -1.69
USF3-201ENST00000316407 VPS13CQ709C8 3753 aa4.46□□□□□ -1.69
USF3-201ENST00000316407 MEGF8Q7Z7M0 2845 aa4.45□□□□□ -1.7
USF3-201ENST00000316407 CSMD2Q7Z408 3487 aa4.44□□□□□ -1.7
USF3-201ENST00000316407 KRTAP1-4P0C5Y4 121 aa4.44□□□□□ -1.7
USF3-201ENST00000316407 FBN1P35555 2871 aaKnown RBP4.42□□□□□ -1.7
USF3-201ENST00000316407 KRTAP10-10P60014 251 aa4.42□□□□□ -1.7
USF3-201ENST00000316407 CSMD3Q7Z407 3707 aa4.41□□□□□ -1.7
USF3-201ENST00000316407 FBN3Q75N90 2809 aa4.4□□□□□ -1.71
USF3-201ENST00000316407 PRO2289Q9P1D8 64 aa4.37□□□□□ -1.71
USF3-201ENST00000316407 OTOGQ6ZRI0 2925 aa4.36□□□□□ -1.71
USF3-201ENST00000316407 KRTAP13-4Q3LI77 160 aa4.34□□□□□ -1.72
USF3-201ENST00000316407 KRTAP13-3Q3SY46 172 aa4.34□□□□□ -1.72
USF3-201ENST00000316407 KRTAP12-1P59990 96 aa4.33□□□□□ -1.72
USF3-201ENST00000316407 KRTAP15-1Q3LI76 137 aa4.25□□□□□ -1.73
USF3-201ENST00000316407 TRRAPQ9Y4A5 3859 aa4.23□□□□□ -1.73
USF3-201ENST00000316407 KRTAP3-1Q9BYR8 98 aa4.16□□□□□ -1.74
USF3-201ENST00000316407 INE1O15225 51 aa4.16□□□□□ -1.74
USF3-201ENST00000316407 CRCT1Q9UGL9 99 aa4.1□□□□□ -1.75
USF3-201ENST00000316407 KRTAP10-6P60371 365 aaPredicted RBP4.09□□□□□ -1.75
USF3-201ENST00000316407 AKAP9Q99996 3911 aa3.99□□□□□ -1.77
USF3-201ENST00000316407 BSNQ9UPA5 3926 aa3.96□□□□□ -1.78
USF3-201ENST00000316407 KRTAP10-12P60413 245 aa3.94□□□□□ -1.78
USF3-201ENST00000316407 KRTAP3-2Q9BYR7 98 aa3.9□□□□□ -1.78
USF3-201ENST00000316407 KRTAP3-3Q9BYR6 98 aa3.89□□□□□ -1.79
USF3-201ENST00000316407 ZNF469Q96JG9 3925 aaPredicted RBP3.87□□□□□ -1.79
USF3-201ENST00000316407 KRTAP12-3P60328 96 aa3.84□□□□□ -1.8
USF3-201ENST00000316407 LCE3AQ5TA76 89 aa3.83□□□□□ -1.8
USF3-201ENST00000316407 KRTAP10-5P60370 271 aa3.8□□□□□ -1.8
USF3-201ENST00000316407 KRTAP23-1A1A580 65 aa3.74□□□□□ -1.81
USF3-201ENST00000316407 KRTAP21-3Q3LHN1 58 aa3.72□□□□□ -1.81
USF3-201ENST00000316407 LORP23490 312 aaPredicted RBP3.68□□□□□ -1.82
USF3-201ENST00000316407 LYSTQ99698 3801 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms