RNA–Protein interactions for RNA: ENST00000302516.9

SF3B3-201, Transcript of splicing factor 3b subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B3, Length 9,720 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-201ENST00000302516 NBEAQ8NFP9 2946 aa4.08□□□□□ -1.76
SF3B3-201ENST00000302516 TGP01266 2768 aa4.08□□□□□ -1.76
SF3B3-201ENST00000302516 PRUNE2Q8WUY3 3088 aa4.07□□□□□ -1.76
SF3B3-201ENST00000302516 WDFY4Q6ZS81 3184 aa4.07□□□□□ -1.76
SF3B3-201ENST00000302516 CELSR2Q9HCU4 2923 aa4.06□□□□□ -1.76
SF3B3-201ENST00000302516 MKI67P46013 3256 aaKnown RBP4.06□□□□□ -1.76
SF3B3-201ENST00000302516 RANBP2P49792 3224 aaKnown RBP4.06□□□□□ -1.76
SF3B3-201ENST00000302516 ASH1LQ9NR48 2969 aaKnown RBP4.05□□□□□ -1.76
SF3B3-201ENST00000302516 KRTAP21-3Q3LHN1 58 aa4.04□□□□□ -1.76
SF3B3-201ENST00000302516 XP32Q5T750 250 aa4.04□□□□□ -1.76
SF3B3-201ENST00000302516 ZZEF1O43149 2961 aa4.04□□□□□ -1.76
SF3B3-201ENST00000302516 ZANQ9Y493 2812 aa4.04□□□□□ -1.76
SF3B3-201ENST00000302516 KRTAP1-4P0C5Y4 121 aa4.03□□□□□ -1.76
SF3B3-201ENST00000302516 TPRXLQ17RH7 258 aa4.03□□□□□ -1.76
SF3B3-201ENST00000302516 MXRA5Q9NR99 2828 aa3.99□□□□□ -1.77
SF3B3-201ENST00000302516 PRO2289Q9P1D8 64 aa3.98□□□□□ -1.77
SF3B3-201ENST00000302516 DCHS2Q6V1P9 2916 aa3.98□□□□□ -1.77
SF3B3-201ENST00000302516 TNRC18O15417 2968 aaPredicted RBP3.96□□□□□ -1.78
SF3B3-201ENST00000302516 USP34Q70CQ2 3546 aa3.96□□□□□ -1.78
SF3B3-201ENST00000302516 COL12A1Q99715 3063 aa3.95□□□□□ -1.78
SF3B3-201ENST00000302516 KRTAP10-8P60410 259 aa3.95□□□□□ -1.78
SF3B3-201ENST00000302516 LAMA1P25391 3075 aa3.94□□□□□ -1.78
SF3B3-201ENST00000302516 KRTAP13-3Q3SY46 172 aa3.94□□□□□ -1.78
SF3B3-201ENST00000302516 FBN2P35556 2912 aa3.93□□□□□ -1.78
SF3B3-201ENST00000302516 LAMA3Q16787 3333 aa3.93□□□□□ -1.78
SF3B3-201ENST00000302516 DMXL2Q8TDJ6 3036 aa3.91□□□□□ -1.78
SF3B3-201ENST00000302516 CRYBG3Q68DQ2 2970 aa3.91□□□□□ -1.78
SF3B3-201ENST00000302516 ATMQ13315 3056 aa3.9□□□□□ -1.79
SF3B3-201ENST00000302516 ADGRG4Q8IZF6 3080 aa3.89□□□□□ -1.79
SF3B3-201ENST00000302516 XIRP2A4UGR9 3374 aa3.89□□□□□ -1.79
SF3B3-201ENST00000302516 TENM2Q9NT68 2774 aa3.89□□□□□ -1.79
SF3B3-201ENST00000302516 SRRM2Q9UQ35 2752 aaKnown RBP3.88□□□□□ -1.79
SF3B3-201ENST00000302516 BOD1L1Q8NFC6 3051 aa3.88□□□□□ -1.79
SF3B3-201ENST00000302516 PDZD2O15018 2839 aa3.88□□□□□ -1.79
SF3B3-201ENST00000302516 KRTAP13-4Q3LI77 160 aa3.86□□□□□ -1.79
SF3B3-201ENST00000302516 CELSR3Q9NYQ7 3312 aa3.85□□□□□ -1.79
SF3B3-201ENST00000302516 COL6A3P12111 3177 aa3.84□□□□□ -1.79
SF3B3-201ENST00000302516 DNAH14Q0VDD8 3507 aa3.84□□□□□ -1.79
SF3B3-201ENST00000302516 FREM2Q5SZK8 3169 aa3.83□□□□□ -1.8
SF3B3-201ENST00000302516 BRCA2P51587 3418 aa3.83□□□□□ -1.8
SF3B3-201ENST00000302516 CELSR1Q9NYQ6 3014 aa3.82□□□□□ -1.8
SF3B3-201ENST00000302516 KRTAP12-2P59991 146 aa3.82□□□□□ -1.8
SF3B3-201ENST00000302516 PKD1L1Q8TDX9 2849 aa3.81□□□□□ -1.8
SF3B3-201ENST00000302516 UNC80Q8N2C7 3258 aa3.81□□□□□ -1.8
SF3B3-201ENST00000302516 CDH23Q9H251 3354 aa3.81□□□□□ -1.8
SF3B3-201ENST00000302516 KRTAP10-10P60014 251 aa3.81□□□□□ -1.8
SF3B3-201ENST00000302516 SPTBN5Q9NRC6 3674 aaKnown RBP3.79□□□□□ -1.8
SF3B3-201ENST00000302516 A0A1B0GVY2 172 aa3.78□□□□□ -1.8
SF3B3-201ENST00000302516 KRTAP12-1P59990 96 aa3.76□□□□□ -1.81
SF3B3-201ENST00000302516 VWFP04275 2813 aa3.75□□□□□ -1.81
SF3B3-201ENST00000302516 DMXL1Q9Y485 3027 aa3.75□□□□□ -1.81
SF3B3-201ENST00000302516 VCANP13611 3396 aa3.74□□□□□ -1.81
SF3B3-201ENST00000302516 REV3LO60673 3130 aa3.73□□□□□ -1.81
SF3B3-201ENST00000302516 INE1O15225 51 aa3.7□□□□□ -1.82
SF3B3-201ENST00000302516 EYSQ5T1H1 3165 aa3.69□□□□□ -1.82
SF3B3-201ENST00000302516 SZT2Q5T011 3432 aa3.66□□□□□ -1.82
SF3B3-201ENST00000302516 ZFHX3Q15911 3703 aa3.64□□□□□ -1.83
SF3B3-201ENST00000302516 CFAP47Q6ZTR5 3102 aa3.64□□□□□ -1.83
SF3B3-201ENST00000302516 KRTAP3-1Q9BYR8 98 aa3.63□□□□□ -1.83
SF3B3-201ENST00000302516 KRTAP15-1Q3LI76 137 aa3.61□□□□□ -1.83
SF3B3-201ENST00000302516 KRTAP10-6P60371 365 aaPredicted RBP3.6□□□□□ -1.83
SF3B3-201ENST00000302516 MEGF8Q7Z7M0 2845 aa3.6□□□□□ -1.83
SF3B3-201ENST00000302516 NBPF19A0A087WUL8 3843 aa3.57□□□□□ -1.84
SF3B3-201ENST00000302516 COL7A1Q02388 2944 aa3.56□□□□□ -1.84
SF3B3-201ENST00000302516 KRTAP23-1A1A580 65 aa3.56□□□□□ -1.84
SF3B3-201ENST00000302516 SPEGQ15772 3267 aa3.56□□□□□ -1.84
SF3B3-201ENST00000302516 FBN3Q75N90 2809 aa3.55□□□□□ -1.84
SF3B3-201ENST00000302516 WDFY3Q8IZQ1 3526 aa3.52□□□□□ -1.85
SF3B3-201ENST00000302516 LOC400499M0QZD8 3231 aa3.5□□□□□ -1.85
SF3B3-201ENST00000302516 FBN1P35555 2871 aaKnown RBP3.49□□□□□ -1.85
SF3B3-201ENST00000302516 ZFHX4Q86UP3 3567 aa3.47□□□□□ -1.85
SF3B3-201ENST00000302516 SPENQ96T58 3664 aaKnown RBP3.46□□□□□ -1.86
SF3B3-201ENST00000302516 KRTAP10-12P60413 245 aa3.46□□□□□ -1.86
SF3B3-201ENST00000302516 KRTAP3-2Q9BYR7 98 aa3.46□□□□□ -1.86
SF3B3-201ENST00000302516 MYO15AQ9UKN7 3530 aa3.45□□□□□ -1.86
SF3B3-201ENST00000302516 AKAP9Q99996 3911 aa3.44□□□□□ -1.86
SF3B3-201ENST00000302516 KRTAP3-3Q9BYR6 98 aa3.43□□□□□ -1.86
SF3B3-201ENST00000302516 ASPMQ8IZT6 3477 aa3.41□□□□□ -1.86
SF3B3-201ENST00000302516 OTOGQ6ZRI0 2925 aa3.4□□□□□ -1.86
SF3B3-201ENST00000302516 DMDP11532 3685 aa3.39□□□□□ -1.87
SF3B3-201ENST00000302516 VPS13CQ709C8 3753 aa3.39□□□□□ -1.87
SF3B3-201ENST00000302516 TRRAPQ9Y4A5 3859 aa3.39□□□□□ -1.87
SF3B3-201ENST00000302516 ALMS1Q8TCU4 4167 aa3.39□□□□□ -1.87
SF3B3-201ENST00000302516 LAMA5O15230 3695 aa3.39□□□□□ -1.87
SF3B3-201ENST00000302516 SMG1Q96Q15 3661 aaKnown RBP3.38□□□□□ -1.87
SF3B3-201ENST00000302516 CSMD1Q96PZ7 3565 aa3.35□□□□□ -1.87
SF3B3-201ENST00000302516 KRTAP12-3P60328 96 aa3.35□□□□□ -1.87
SF3B3-201ENST00000302516 DCHS1Q96JQ0 3298 aa3.35□□□□□ -1.87
SF3B3-201ENST00000302516 MT1HL1P0DM35 61 aa3.33□□□□□ -1.88
SF3B3-201ENST00000302516 RELNP78509 3460 aa3.31□□□□□ -1.88
SF3B3-201ENST00000302516 KRTAP10-4P60372 401 aaPredicted RBP3.27□□□□□ -1.89
SF3B3-201ENST00000302516 LCE3AQ5TA76 89 aa3.24□□□□□ -1.89
SF3B3-201ENST00000302516 BSNQ9UPA5 3926 aa3.23□□□□□ -1.89
SF3B3-201ENST00000302516 HUWE1Q7Z6Z7 4374 aaKnown RBP3.22□□□□□ -1.89
SF3B3-201ENST00000302516 CUBNO60494 3623 aa3.2□□□□□ -1.9
SF3B3-201ENST00000302516 CMYA5Q8N3K9 4069 aa3.19□□□□□ -1.9
SF3B3-201ENST00000302516 DNAH3Q8TD57 4116 aa3.18□□□□□ -1.9
SF3B3-201ENST00000302516 DNAH7Q8WXX0 4024 aa3.18□□□□□ -1.9
SF3B3-201ENST00000302516 SVEP1Q4LDE5 3571 aa3.17□□□□□ -1.9
SF3B3-201ENST00000302516 ANK3Q12955 4377 aaKnown RBP3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms