RNA–Protein interactions for RNA: ENST00000261769.9

CDH1-201, Transcript of cadherin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDH1, Length 4,889 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-201ENST00000261769 R4GN34 69 aa8.02□□□□□ -1.13
CDH1-201ENST00000261769 HRNRQ86YZ3 2850 aaPredicted RBP8.02□□□□□ -1.13
CDH1-201ENST00000261769 MXRA5Q9NR99 2828 aa7.99□□□□□ -1.13
CDH1-201ENST00000261769 KRTAP13-2Q52LG2 175 aa7.99□□□□□ -1.13
CDH1-201ENST00000261769 USP34Q70CQ2 3546 aa7.99□□□□□ -1.13
CDH1-201ENST00000261769 H3BS24 57 aa7.98□□□□□ -1.13
CDH1-201ENST00000261769 TENM3Q9P273 2699 aa7.97□□□□□ -1.13
CDH1-201ENST00000261769 DMAC1Q96GE9 116 aa7.96□□□□□ -1.13
CDH1-201ENST00000261769 MYO15AQ9UKN7 3530 aa7.96□□□□□ -1.14
CDH1-201ENST00000261769 Q1T7F1 81 aa7.95□□□□□ -1.14
CDH1-201ENST00000261769 CFAP47Q6ZTR5 3102 aa7.93□□□□□ -1.14
CDH1-201ENST00000261769 TENM1Q9UKZ4 2725 aa7.93□□□□□ -1.14
CDH1-201ENST00000261769 KRTAP29-1A8MX34 341 aaPredicted RBP7.93□□□□□ -1.14
CDH1-201ENST00000261769 Q75L30 129 aa7.92□□□□□ -1.14
CDH1-201ENST00000261769 LINC01558Q9Y6Z2 57 aa7.9□□□□□ -1.14
CDH1-201ENST00000261769 FBN2P35556 2912 aa7.9□□□□□ -1.14
CDH1-201ENST00000261769 RPL37P61927 97 aaKnown RBP7.86□□□□□ -1.15
CDH1-201ENST00000261769 NOTCH2NLQ7Z3S9 236 aa7.85□□□□□ -1.15
CDH1-201ENST00000261769 TENM2Q9NT68 2774 aa7.85□□□□□ -1.15
CDH1-201ENST00000261769 H1FX-AS1Q4G0G2 97 aa7.85□□□□□ -1.15
CDH1-201ENST00000261769 LOC400499M0QZD8 3231 aa7.84□□□□□ -1.15
CDH1-201ENST00000261769 M0QZ58 72 aa7.83□□□□□ -1.16
CDH1-201ENST00000261769 PRAC1Q96KF2 57 aa7.82□□□□□ -1.16
CDH1-201ENST00000261769 PLAC4Q8WY50 150 aa7.77□□□□□ -1.17
CDH1-201ENST00000261769 Q5VV11 94 aa7.76□□□□□ -1.17
CDH1-201ENST00000261769 ADM2Q7Z4H4 148 aa7.75□□□□□ -1.17
CDH1-201ENST00000261769 PDZD2O15018 2839 aa7.73□□□□□ -1.17
CDH1-201ENST00000261769 PKD1L1Q8TDX9 2849 aa7.73□□□□□ -1.17
CDH1-201ENST00000261769 KRTAP1-4P0C5Y4 121 aa7.72□□□□□ -1.17
CDH1-201ENST00000261769 C20orf166-AS1Q96NR2 134 aa7.7□□□□□ -1.18
CDH1-201ENST00000261769 A8MUU9 505 aa7.69□□□□□ -1.18
CDH1-201ENST00000261769 CELSR1Q9NYQ6 3014 aa7.68□□□□□ -1.18
CDH1-201ENST00000261769 DCHS1Q96JQ0 3298 aa7.66□□□□□ -1.18
CDH1-201ENST00000261769 WDFY3Q8IZQ1 3526 aa7.64□□□□□ -1.19
CDH1-201ENST00000261769 LUZP6Q538Z0 58 aa7.63□□□□□ -1.19
CDH1-201ENST00000261769 TPRXLQ17RH7 258 aa7.61□□□□□ -1.19
CDH1-201ENST00000261769 OTOGQ6ZRI0 2925 aa7.61□□□□□ -1.19
CDH1-201ENST00000261769 A0A1B0GVY2 172 aa7.6□□□□□ -1.19
CDH1-201ENST00000261769 XP32Q5T750 250 aa7.59□□□□□ -1.19
CDH1-201ENST00000261769 TGP01266 2768 aa7.53□□□□□ -1.2
CDH1-201ENST00000261769 SPATA8Q6RVD6 105 aa7.51□□□□□ -1.21
CDH1-201ENST00000261769 ROMO1P60602 79 aa7.51□□□□□ -1.21
CDH1-201ENST00000261769 VWFP04275 2813 aa7.49□□□□□ -1.21
CDH1-201ENST00000261769 A8MU10 97 aa7.49□□□□□ -1.21
CDH1-201ENST00000261769 RELNP78509 3460 aa7.47□□□□□ -1.21
CDH1-201ENST00000261769 ASPMQ8IZT6 3477 aa7.47□□□□□ -1.21
CDH1-201ENST00000261769 KRTAP10-8P60410 259 aa7.45□□□□□ -1.22
CDH1-201ENST00000261769 ZFHX4Q86UP3 3567 aa7.45□□□□□ -1.22
CDH1-201ENST00000261769 FBN1P35555 2871 aaKnown RBP7.45□□□□□ -1.22
CDH1-201ENST00000261769 A6NN06 94 aa7.43□□□□□ -1.22
CDH1-201ENST00000261769 KRTAP13-3Q3SY46 172 aa7.42□□□□□ -1.22
CDH1-201ENST00000261769 DMDP11532 3685 aa7.42□□□□□ -1.22
CDH1-201ENST00000261769 LAMA5O15230 3695 aa7.42□□□□□ -1.22
CDH1-201ENST00000261769 MUC3AQ02505 3323 aa7.41□□□□□ -1.22
CDH1-201ENST00000261769 KRTAP16-1A8MUX0 517 aa7.28□□□□□ -1.24
CDH1-201ENST00000261769 ZFHX3Q15911 3703 aa7.27□□□□□ -1.25
CDH1-201ENST00000261769 SMG1Q96Q15 3661 aaKnown RBP7.26□□□□□ -1.25
CDH1-201ENST00000261769 NBPF19A0A087WUL8 3843 aa7.26□□□□□ -1.25
CDH1-201ENST00000261769 SRRM2Q9UQ35 2752 aaKnown RBP7.25□□□□□ -1.25
CDH1-201ENST00000261769 KRTAP10-10P60014 251 aa7.24□□□□□ -1.25
CDH1-201ENST00000261769 TNP1P09430 55 aa7.24□□□□□ -1.25
CDH1-201ENST00000261769 CSMD1Q96PZ7 3565 aa7.23□□□□□ -1.25
CDH1-201ENST00000261769 FBN3Q75N90 2809 aa7.12□□□□□ -1.27
CDH1-201ENST00000261769 A0A0A0MQY5 61 aa7.11□□□□□ -1.27
CDH1-201ENST00000261769 KRTAP25-1Q3LHN0 102 aa7.1□□□□□ -1.27
CDH1-201ENST00000261769 PRO2289Q9P1D8 64 aa7.09□□□□□ -1.27
CDH1-201ENST00000261769 SVEP1Q4LDE5 3571 aa7.08□□□□□ -1.28
CDH1-201ENST00000261769 ANK3Q12955 4377 aaKnown RBP7.06□□□□□ -1.28
CDH1-201ENST00000261769 NDUFAF8A1L188 74 aa7.05□□□□□ -1.28
CDH1-201ENST00000261769 PP632Q6XCG6 107 aa6.97□□□□□ -1.29
CDH1-201ENST00000261769 MEGF8Q7Z7M0 2845 aa6.93□□□□□ -1.3
CDH1-201ENST00000261769 P0C880 135 aa6.92□□□□□ -1.3
CDH1-201ENST00000261769 CUBNO60494 3623 aa6.91□□□□□ -1.3
CDH1-201ENST00000261769 SPENQ96T58 3664 aaKnown RBP6.9□□□□□ -1.3
CDH1-201ENST00000261769 MT1HL1P0DM35 61 aa6.9□□□□□ -1.3
CDH1-201ENST00000261769 COL7A1Q02388 2944 aa6.87□□□□□ -1.31
CDH1-201ENST00000261769 CSMD2Q7Z408 3487 aa6.86□□□□□ -1.31
CDH1-201ENST00000261769 H0YAA0 97 aa6.84□□□□□ -1.31
CDH1-201ENST00000261769 TRRAPQ9Y4A5 3859 aa6.8□□□□□ -1.32
CDH1-201ENST00000261769 BSNQ9UPA5 3926 aa6.79□□□□□ -1.32
CDH1-201ENST00000261769 KRTAP10-4P60372 401 aaPredicted RBP6.74□□□□□ -1.33
CDH1-201ENST00000261769 KRTAP4-5Q9BYR2 181 aa6.74□□□□□ -1.33
CDH1-201ENST00000261769 C10orf95Q9H7T3 257 aa6.73□□□□□ -1.33
CDH1-201ENST00000261769 KRTAP3-1Q9BYR8 98 aa6.64□□□□□ -1.35
CDH1-201ENST00000261769 HUWE1Q7Z6Z7 4374 aaKnown RBP6.56□□□□□ -1.36
CDH1-201ENST00000261769 KRTAP12-2P59991 146 aa6.5□□□□□ -1.37
CDH1-201ENST00000261769 KRTAP13-4Q3LI77 160 aa6.49□□□□□ -1.37
CDH1-201ENST00000261769 KRTAP12-1P59990 96 aa6.48□□□□□ -1.37
CDH1-201ENST00000261769 ALMS1Q8TCU4 4167 aa6.47□□□□□ -1.37
CDH1-201ENST00000261769 VPS13CQ709C8 3753 aa6.47□□□□□ -1.37
CDH1-201ENST00000261769 DNHD1Q96M86 4753 aa6.39□□□□□ -1.39
CDH1-201ENST00000261769 KRTAP10-6P60371 365 aaPredicted RBP6.39□□□□□ -1.39
CDH1-201ENST00000261769 DNAH9Q9NYC9 4486 aa6.37□□□□□ -1.39
CDH1-201ENST00000261769 DNAH5Q8TE73 4624 aa6.29□□□□□ -1.4
CDH1-201ENST00000261769 ZNF469Q96JG9 3925 aaPredicted RBP6.27□□□□□ -1.41
CDH1-201ENST00000261769 KRTAP3-3Q9BYR6 98 aa6.25□□□□□ -1.41
CDH1-201ENST00000261769 DNAH11Q96DT5 4516 aa6.24□□□□□ -1.41
CDH1-201ENST00000261769 PLECQ15149 4684 aaKnown RBP6.22□□□□□ -1.41
CDH1-201ENST00000261769 AKAP9Q99996 3911 aa6.21□□□□□ -1.41
CDH1-201ENST00000261769 KRTAP3-2Q9BYR7 98 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 134.4 ms