RNA–Protein interactions for RNA: ENST00000261769.9

CDH1-201, Transcript of cadherin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDH1, Length 4,889 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-201ENST00000261769 DCAF8L2P0C7V8 631 aa25.22■■□□□ 1.63
CDH1-201ENST00000261769 NISCHQ9Y2I1 1504 aa24.98■■□□□ 1.59
CDH1-201ENST00000261769 SUPT5HO00267 1087 aaKnown RBP23.37■■□□□ 1.33
CDH1-201ENST00000261769 SHROOM4Q9ULL8 1493 aa23.22■■□□□ 1.31
CDH1-201ENST00000261769 FAM9AQ8IZU1 332 aaPredicted RBP22.38■■□□□ 1.17
CDH1-201ENST00000261769 EHMT2Q96KQ7 1210 aa22.26■■□□□ 1.15
CDH1-201ENST00000261769 APLP2Q06481 763 aa22.2■■□□□ 1.14
CDH1-201ENST00000261769 TRIM41Q8WV44 630 aa21.84■■□□□ 1.09
CDH1-201ENST00000261769 ABCC9O60706 1549 aa21.81■■□□□ 1.08
CDH1-201ENST00000261769 RANGAP1P46060 587 aaPredicted RBP21.62■■□□□ 1.05
CDH1-201ENST00000261769 ATP1B4Q9UN42 357 aaPredicted RBP21.57■■□□□ 1.04
CDH1-201ENST00000261769 UBTFP17480 764 aaKnown RBP21.56■■□□□ 1.04
CDH1-201ENST00000261769 PABPN1Q86U42 306 aaKnown RBP eCLIP21.46■■□□□ 1.03
CDH1-201ENST00000261769 TTBK1Q5TCY1 1321 aaPredicted RBP21.41■■□□□ 1.02
CDH1-201ENST00000261769 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.07■□□□□ 0.96
CDH1-201ENST00000261769 HNRNPUL2Q1KMD3 747 aaKnown RBP21.07■□□□□ 0.96
CDH1-201ENST00000261769 PCGF6Q9BYE7 350 aa21.04■□□□□ 0.96
CDH1-201ENST00000261769 MYT1LQ9UL68 1186 aa20.96■□□□□ 0.95
CDH1-201ENST00000261769 CCER1Q8TC90 406 aaPredicted RBP20.88■□□□□ 0.93
CDH1-201ENST00000261769 ZEB1P37275 1124 aaPredicted RBP20.81■□□□□ 0.92
CDH1-201ENST00000261769 PELP1Q8IZL8 1130 aaKnown RBP20.81■□□□□ 0.92
CDH1-201ENST00000261769 CCDC180Q9P1Z9 1646 aa20.78■□□□□ 0.92
CDH1-201ENST00000261769 CHIC1Q5VXU3 224 aa20.77■□□□□ 0.92
CDH1-201ENST00000261769 SCRIBQ14160 1630 aa20.68■□□□□ 0.9
CDH1-201ENST00000261769 FBLN2P98095 1184 aa20.65■□□□□ 0.9
CDH1-201ENST00000261769 PPARGC1BQ86YN6 1023 aaKnown RBP20.63■□□□□ 0.89
CDH1-201ENST00000261769 ZCCHC6Q5VYS8 1495 aaKnown RBP20.62■□□□□ 0.89
CDH1-201ENST00000261769 ITGAEP38570 1179 aa20.6■□□□□ 0.89
CDH1-201ENST00000261769 RB1CC1Q8TDY2 1594 aa20.52■□□□□ 0.88
CDH1-201ENST00000261769 LOC105371045A0A1W2PR82 267 aa20.52■□□□□ 0.88
CDH1-201ENST00000261769 TRIM26Q12899 539 aaPredicted RBP20.46■□□□□ 0.87
CDH1-201ENST00000261769 NACADO15069 1562 aa20.32■□□□□ 0.84
CDH1-201ENST00000261769 FAM50AQ14320 339 aaKnown RBP20.28■□□□□ 0.84
CDH1-201ENST00000261769 CENPBP07199 599 aaPredicted RBP20.27■□□□□ 0.84
CDH1-201ENST00000261769 CSRNP3Q8WYN3 585 aa20.25■□□□□ 0.83
CDH1-201ENST00000261769 POLR3GLQ9BT43 218 aa20.18■□□□□ 0.82
CDH1-201ENST00000261769 CDK11AQ9UQ88 783 aaPredicted RBP20.17■□□□□ 0.82
CDH1-201ENST00000261769 NPM1P06748 294 aaKnown RBP eCLIP20.14■□□□□ 0.82
CDH1-201ENST00000261769 TRIM52Q96A61 297 aa20.14■□□□□ 0.81
CDH1-201ENST00000261769 P3H3Q8IVL6 736 aa20.1■□□□□ 0.81
CDH1-201ENST00000261769 NEFLP07196 543 aa20.04■□□□□ 0.8
CDH1-201ENST00000261769 ARID3CA6NKF2 412 aa20.01■□□□□ 0.79
CDH1-201ENST00000261769 SLC4A1APQ9BWU0 796 aaKnown RBP20.01■□□□□ 0.79
CDH1-201ENST00000261769 CHMP7Q8WUX9 453 aaPredicted RBP19.98■□□□□ 0.79
CDH1-201ENST00000261769 ESF1Q9H501 851 aaKnown RBP19.93■□□□□ 0.78
CDH1-201ENST00000261769 BAZ1BQ9UIG0 1483 aaKnown RBP19.92■□□□□ 0.78
CDH1-201ENST00000261769 ZNF777Q9ULD5 760 aaPredicted RBP19.91■□□□□ 0.78
CDH1-201ENST00000261769 DCAF1Q9Y4B6 1507 aa19.87■□□□□ 0.77
CDH1-201ENST00000261769 YTHDC1Q96MU7 727 aaKnown RBP19.84■□□□□ 0.77
CDH1-201ENST00000261769 RSF1Q96T23 1441 aaPredicted RBP19.8■□□□□ 0.76
CDH1-201ENST00000261769 BCANQ96GW7 911 aa19.8■□□□□ 0.76
CDH1-201ENST00000261769 CNGB1Q14028 1251 aaPredicted RBP19.8■□□□□ 0.76
CDH1-201ENST00000261769 NEUROD1Q13562 356 aa19.79■□□□□ 0.76
CDH1-201ENST00000261769 ERCC6Q03468 1493 aa19.78■□□□□ 0.76
CDH1-201ENST00000261769 ZNF326Q5BKZ1 582 aaKnown RBP19.75■□□□□ 0.75
CDH1-201ENST00000261769 HRCP23327 699 aa19.74■□□□□ 0.75
CDH1-201ENST00000261769 BAZ1AQ9NRL2 1556 aaPredicted RBP19.73■□□□□ 0.75
CDH1-201ENST00000261769 ERICH6Q7L0X2 663 aa19.7■□□□□ 0.74
CDH1-201ENST00000261769 STAG3Q9UJ98 1225 aa19.64■□□□□ 0.73
CDH1-201ENST00000261769 WRNQ14191 1432 aaPredicted RBP eCLIP19.61■□□□□ 0.73
CDH1-201ENST00000261769 TSPY4P0CV99 314 aa19.6■□□□□ 0.73
CDH1-201ENST00000261769 TSPY10P0CW01 314 aa19.6■□□□□ 0.73
CDH1-201ENST00000261769 EEA1Q15075 1411 aa19.59■□□□□ 0.73
CDH1-201ENST00000261769 MTUS2Q5JR59 1369 aa19.55■□□□□ 0.72
CDH1-201ENST00000261769 KIF27Q86VH2 1401 aa19.55■□□□□ 0.72
CDH1-201ENST00000261769 PLEKHD1A6NEE1 506 aa19.53■□□□□ 0.72
CDH1-201ENST00000261769 CHGAP10645 457 aaKnown RBP19.53■□□□□ 0.72
CDH1-201ENST00000261769 CECR2Q9BXF3 1484 aa19.5■□□□□ 0.71
CDH1-201ENST00000261769 PLPPR3Q6T4P5 718 aa19.5■□□□□ 0.71
CDH1-201ENST00000261769 MYO15BQ96JP2 1530 aa19.47■□□□□ 0.71
CDH1-201ENST00000261769 KCNH8Q96L42 1107 aa19.47■□□□□ 0.71
CDH1-201ENST00000261769 PDS5BQ9NTI5 1447 aa19.45■□□□□ 0.7
CDH1-201ENST00000261769 SMARCA2P51531 1590 aa19.44■□□□□ 0.7
CDH1-201ENST00000261769 CLIP1P30622 1438 aa19.44■□□□□ 0.7
CDH1-201ENST00000261769 NEFMP07197 916 aa19.43■□□□□ 0.7
CDH1-201ENST00000261769 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.42■□□□□ 0.7
CDH1-201ENST00000261769 CHIC2Q9UKJ5 165 aa19.39■□□□□ 0.7
CDH1-201ENST00000261769 ANP32CO43423 234 aa19.39■□□□□ 0.69
CDH1-201ENST00000261769 DIEXFQ68CQ4 756 aaKnown RBP19.38■□□□□ 0.69
CDH1-201ENST00000261769 GOLGA3Q08378 1498 aa19.37■□□□□ 0.69
CDH1-201ENST00000261769 DAXXQ9UER7 740 aaPredicted RBP19.34■□□□□ 0.69
CDH1-201ENST00000261769 TONSLQ96HA7 1378 aa19.33■□□□□ 0.68
CDH1-201ENST00000261769 ACIN1Q9UKV3 1341 aaKnown RBP19.29■□□□□ 0.68
CDH1-201ENST00000261769 CEP164Q9UPV0 1460 aa19.27■□□□□ 0.68
CDH1-201ENST00000261769 SLC24A1O60721 1099 aa19.26■□□□□ 0.67
CDH1-201ENST00000261769 CFDP1Q9UEE9 299 aaPredicted RBP19.25■□□□□ 0.67
CDH1-201ENST00000261769 ARID4BQ4LE39 1312 aaPredicted RBP19.25■□□□□ 0.67
CDH1-201ENST00000261769 CUX2O14529 1486 aa19.24■□□□□ 0.67
CDH1-201ENST00000261769 MROH2BQ7Z745 1585 aa19.24■□□□□ 0.67
CDH1-201ENST00000261769 CARMIL1Q5VZK9 1371 aa19.22■□□□□ 0.67
CDH1-201ENST00000261769 CLSPNQ9HAW4 1339 aa19.21■□□□□ 0.67
CDH1-201ENST00000261769 TRHP20396 242 aaPredicted RBP19.19■□□□□ 0.66
CDH1-201ENST00000261769 CADPSQ9ULU8 1353 aa19.19■□□□□ 0.66
CDH1-201ENST00000261769 ZNF316A6NFI3 1004 aaPredicted RBP19.18■□□□□ 0.66
CDH1-201ENST00000261769 ZBTB47Q9UFB7 747 aaPredicted RBP19.17■□□□□ 0.66
CDH1-201ENST00000261769 PPP1R15AO75807 674 aaPredicted RBP19.17■□□□□ 0.66
CDH1-201ENST00000261769 CCDC88BA6NC98 1476 aa19.16■□□□□ 0.66
CDH1-201ENST00000261769 CEP162Q5TB80 1403 aa19.16■□□□□ 0.66
CDH1-201ENST00000261769 TNIKQ9UKE5 1360 aa19.16■□□□□ 0.66
CDH1-201ENST00000261769 SOGA1O94964 1423 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 160 ms