RNA–Protein interactions for RNA: ENST00000476391.5

HDAC1-206, Transcript of histone deacetylase 1, humanhuman

TSL 1 (best)

Gene HDAC1, Length 2,409 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-206ENST00000476391 Q8N814 137 aa9.77□□□□□ -0.85
HDAC1-206ENST00000476391 LINC01560Q8TB33 94 aa9.77□□□□□ -0.85
HDAC1-206ENST00000476391 TRAV10A0A0B4J240 114 aa9.76□□□□□ -0.85
HDAC1-206ENST00000476391 PAX4O43316 350 aa9.76□□□□□ -0.85
HDAC1-206ENST00000476391 LINC01547P58512 204 aaPredicted RBP9.76□□□□□ -0.85
HDAC1-206ENST00000476391 Q8NA96 180 aa9.75□□□□□ -0.85
HDAC1-206ENST00000476391 TRBV7-4A0A0J9YYF1 115 aa9.74□□□□□ -0.85
HDAC1-206ENST00000476391 K7EQD1 137 aa9.74□□□□□ -0.85
HDAC1-206ENST00000476391 MIFP14174 115 aa9.74□□□□□ -0.85
HDAC1-206ENST00000476391 SPTBN1Q01082 2364 aaKnown RBP9.74□□□□□ -0.85
HDAC1-206ENST00000476391 IGLV1-40P01703 118 aa9.74□□□□□ -0.85
HDAC1-206ENST00000476391 CXCL6P80162 114 aa9.74□□□□□ -0.85
HDAC1-206ENST00000476391 MAP1BP46821 2468 aaKnown RBP9.73□□□□□ -0.85
HDAC1-206ENST00000476391 C11orf71Q6IPW1 123 aa9.73□□□□□ -0.85
HDAC1-206ENST00000476391 Q6ZQT0 140 aa9.73□□□□□ -0.85
HDAC1-206ENST00000476391 Q6ZTI0 123 aa9.73□□□□□ -0.85
HDAC1-206ENST00000476391 DCHS2Q6V1P9 2916 aa9.72□□□□□ -0.85
HDAC1-206ENST00000476391 LOC110117498A0A087WWA1 95 aa9.72□□□□□ -0.85
HDAC1-206ENST00000476391 BPESC1Q9GZL8 116 aa9.72□□□□□ -0.85
HDAC1-206ENST00000476391 TOMM7Q9P0U1 55 aa9.72□□□□□ -0.85
HDAC1-206ENST00000476391 ERC2-IT1O76042 136 aa9.71□□□□□ -0.86
HDAC1-206ENST00000476391 Q6ZVQ6 151 aa9.71□□□□□ -0.86
HDAC1-206ENST00000476391 HAMPP81172 84 aa9.7□□□□□ -0.86
HDAC1-206ENST00000476391 NTM-AS1Q6ZSK4 140 aa9.7□□□□□ -0.86
HDAC1-206ENST00000476391 A8MTW9 85 aa9.7□□□□□ -0.86
HDAC1-206ENST00000476391 Q8N3U1 123 aa9.7□□□□□ -0.86
HDAC1-206ENST00000476391 LAMTOR3Q9UHA4 124 aa9.7□□□□□ -0.86
HDAC1-206ENST00000476391 CCL21O00585 134 aa9.69□□□□□ -0.86
HDAC1-206ENST00000476391 MPLKIPQ8TAP9 179 aa9.69□□□□□ -0.86
HDAC1-206ENST00000476391 TM2D3Q9BRN9 247 aa9.69□□□□□ -0.86
HDAC1-206ENST00000476391 TRBV10-1A0A0K0K1A3 114 aa9.68□□□□□ -0.86
HDAC1-206ENST00000476391 A0A1W2PRX2 142 aa9.68□□□□□ -0.86
HDAC1-206ENST00000476391 FAM229BQ4G0N7 80 aa9.68□□□□□ -0.86
HDAC1-206ENST00000476391 A0A096LNT2 108 aa9.68□□□□□ -0.86
HDAC1-206ENST00000476391 PRM2P04554 102 aa9.68□□□□□ -0.86
HDAC1-206ENST00000476391 PRR15Q8IV56 129 aa9.68□□□□□ -0.86
HDAC1-206ENST00000476391 PMAIP1Q13794 54 aa9.67□□□□□ -0.86
HDAC1-206ENST00000476391 ESRGQ1W209 222 aa9.67□□□□□ -0.86
HDAC1-206ENST00000476391 TMEM254Q8TBM7 123 aa9.67□□□□□ -0.86
HDAC1-206ENST00000476391 DMXL1Q9Y485 3027 aa9.67□□□□□ -0.86
HDAC1-206ENST00000476391 ANKHD1Q8IWZ3 2542 aaKnown RBP9.67□□□□□ -0.86
HDAC1-206ENST00000476391 COL6A6A6NMZ7 2263 aa9.67□□□□□ -0.86
HDAC1-206ENST00000476391 PLAC8L1A1L4L8 177 aa9.67□□□□□ -0.86
HDAC1-206ENST00000476391 LRBAP50851 2863 aa9.67□□□□□ -0.86
HDAC1-206ENST00000476391 SORL1Q92673 2214 aa9.67□□□□□ -0.86
HDAC1-206ENST00000476391 UBE2L6O14933 153 aa9.66□□□□□ -0.86
HDAC1-206ENST00000476391 PDE6GP18545 87 aa9.66□□□□□ -0.86
HDAC1-206ENST00000476391 NANOS2P60321 138 aaKnown RBP9.66□□□□□ -0.86
HDAC1-206ENST00000476391 FBXL19-AS1Q494R0 122 aa9.66□□□□□ -0.86
HDAC1-206ENST00000476391 ZNF561-AS1K7EIQ3 104 aa9.66□□□□□ -0.86
HDAC1-206ENST00000476391 C1orf158Q8N1D5 194 aa9.66□□□□□ -0.86
HDAC1-206ENST00000476391 SVEP1Q4LDE5 3571 aa9.66□□□□□ -0.86
HDAC1-206ENST00000476391 NREPQ16612 68 aa9.65□□□□□ -0.86
HDAC1-206ENST00000476391 C6orf226Q5I0X4 101 aa9.65□□□□□ -0.86
HDAC1-206ENST00000476391 C6orf223Q8N319 242 aa9.65□□□□□ -0.86
HDAC1-206ENST00000476391 Q6ZRU5 148 aa9.65□□□□□ -0.86
HDAC1-206ENST00000476391 IGHV3OR16-9A0A0B4J2B5 98 aa9.64□□□□□ -0.87
HDAC1-206ENST00000476391 RNASE1P07998 156 aaKnown RBP9.64□□□□□ -0.87
HDAC1-206ENST00000476391 GRNP28799 593 aaKnown RBP9.64□□□□□ -0.87
HDAC1-206ENST00000476391 OTOGLQ3ZCN5 2332 aa9.64□□□□□ -0.87
HDAC1-206ENST00000476391 A0A087WZ39 114 aa9.63□□□□□ -0.87
HDAC1-206ENST00000476391 TMEM89A2RUT3 159 aa9.63□□□□□ -0.87
HDAC1-206ENST00000476391 LY6EQ16553 131 aa9.63□□□□□ -0.87
HDAC1-206ENST00000476391 C9orf66Q5T8R8 295 aa9.63□□□□□ -0.87
HDAC1-206ENST00000476391 DYNLRB2Q8TF09 96 aa9.63□□□□□ -0.87
HDAC1-206ENST00000476391 RELNP78509 3460 aa9.63□□□□□ -0.87
HDAC1-206ENST00000476391 ZFHX2Q9C0A1 2572 aaPredicted RBP9.63□□□□□ -0.87
HDAC1-206ENST00000476391 A6NDX4 124 aa9.63□□□□□ -0.87
HDAC1-206ENST00000476391 IGHV4-38-2P0DP08 117 aa9.63□□□□□ -0.87
HDAC1-206ENST00000476391 LMO4P61968 165 aa9.63□□□□□ -0.87
HDAC1-206ENST00000476391 C11orf44Q8N8P7 122 aa9.62□□□□□ -0.87
HDAC1-206ENST00000476391 MUC6Q6W4X9 2439 aa9.62□□□□□ -0.87
HDAC1-206ENST00000476391 EP300Q09472 2414 aaPredicted RBP9.61□□□□□ -0.87
HDAC1-206ENST00000476391 DEFB131AP59861 70 aa9.61□□□□□ -0.87
HDAC1-206ENST00000476391 C11orf68Q9H3H3 251 aaKnown RBP9.61□□□□□ -0.87
HDAC1-206ENST00000476391 M0R2N4 97 aa9.61□□□□□ -0.87
HDAC1-206ENST00000476391 BSNQ9UPA5 3926 aa9.6□□□□□ -0.87
HDAC1-206ENST00000476391 PTPRZ1P23471 2315 aaPredicted RBP9.6□□□□□ -0.87
HDAC1-206ENST00000476391 PRYO14603 147 aa9.6□□□□□ -0.87
HDAC1-206ENST00000476391 LINC00575Q6W349 94 aa9.6□□□□□ -0.87
HDAC1-206ENST00000476391 DEFB124Q8NES8 71 aa9.6□□□□□ -0.87
HDAC1-206ENST00000476391 IL17DQ8TAD2 202 aa9.6□□□□□ -0.87
HDAC1-206ENST00000476391 LAMA5O15230 3695 aa9.6□□□□□ -0.87
HDAC1-206ENST00000476391 H3BQ85 93 aa9.6□□□□□ -0.87
HDAC1-206ENST00000476391 H3BUX3 64 aa9.6□□□□□ -0.87
HDAC1-206ENST00000476391 BPY2O14599 106 aa9.6□□□□□ -0.87
HDAC1-206ENST00000476391 FUSP35637 526 aaKnown RBP eCLIP9.6□□□□□ -0.871e-8■□□□□ 10.5
HDAC1-206ENST00000476391 BRD3OSQ6XYD6 125 aa9.6□□□□□ -0.87
HDAC1-206ENST00000476391 Q6ZTC4 211 aa9.59□□□□□ -0.87
HDAC1-206ENST00000476391 ZFHX3Q15911 3703 aa9.59□□□□□ -0.87
HDAC1-206ENST00000476391 INSP01308 110 aa9.58□□□□□ -0.88
HDAC1-206ENST00000476391 C6orf99Q4VX62 202 aa9.57□□□□□ -0.88
HDAC1-206ENST00000476391 ZNF843Q8N446 348 aa9.57□□□□□ -0.88
HDAC1-206ENST00000476391 TRGV1A0A0A0MS02 117 aa9.56□□□□□ -0.88
HDAC1-206ENST00000476391 IGKV3OR2-268A0A0C4DH90 116 aa9.56□□□□□ -0.88
HDAC1-206ENST00000476391 GNLYP22749 145 aa9.56□□□□□ -0.88
HDAC1-206ENST00000476391 RIF1Q5UIP0 2472 aaKnown RBP9.56□□□□□ -0.88
HDAC1-206ENST00000476391 PRR3P79522 188 aaKnown RBP9.54□□□□□ -0.88
HDAC1-206ENST00000476391 Q1T7F1 81 aa9.54□□□□□ -0.88
HDAC1-206ENST00000476391 Q8IZM0 81 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms