RNA–Protein interactions for RNA: snR42

snR42, Transcript of H/ACA box small nucleolar RNA (snoRNA), yeastyeast

Gene snR42, Length 351 nt, Biotype snoRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
snR42snR42 PRE3P38624 215 aa6.49□□□□□ -1.37
snR42snR42 PTC4P38089 393 aa6.46□□□□□ -1.38
snR42snR42 DCW1P36091 449 aa6.44□□□□□ -1.38
snR42snR42 RCR1P38212 213 aa6.44□□□□□ -1.38
snR42snR42 YEL023CP39992 682 aa6.43□□□□□ -1.38
snR42snR42 XDJ1P39102 459 aa6.38□□□□□ -1.39
snR42snR42 VRP1P37370 817 aa6.35□□□□□ -1.39
snR42snR42 GRE2Q12068 342 aaKnown RBP6.33□□□□□ -1.4
snR42snR42 ELP4Q02884 456 aaKnown RBP6.32□□□□□ -1.4
snR42snR42 INO80P53115 1489 aa6.32□□□□□ -1.4
snR42snR42 PML39Q03760 334 aa6.31□□□□□ -1.4
snR42snR42 YDR344CQ05510 147 aa6.29□□□□□ -1.4
snR42snR42 DPS1P04802 557 aaKnown RBP6.26□□□□□ -1.41
snR42snR42 MON2P48563 1636 aaPredicted RBP6.25□□□□□ -1.41
snR42snR42 GUT1P32190 709 aa6.25□□□□□ -1.41
snR42snR42 ARH1P48360 493 aa6.25□□□□□ -1.41
snR42snR42 ATH1P48016 1211 aa6.24□□□□□ -1.41
snR42snR42 MIF2P35201 549 aa6.22□□□□□ -1.41
snR42snR42 MAK11P20484 414 aaKnown RBP6.21□□□□□ -1.42
snR42snR42 PTC3P34221 468 aaKnown RBP6.21□□□□□ -1.42
snR42snR42 SPT23P35210 1082 aa6.19□□□□□ -1.42
snR42snR42 NST1P53935 1240 aa6.19□□□□□ -1.42
snR42snR42 EDS1P38073 919 aa6.18□□□□□ -1.42
snR42snR42 MID1P41821 548 aa6.18□□□□□ -1.42
snR42snR42 PEX29Q03370 554 aa6.17□□□□□ -1.42
snR42snR42 AI4P03878 556 aa6.15□□□□□ -1.42
snR42snR42 MPH3P0CE00 602 aa6.15□□□□□ -1.42
snR42snR42 RAM2P29703 316 aa6.14□□□□□ -1.43
snR42snR42 HAP5Q02516 242 aa6.14□□□□□ -1.43
snR42snR42 SOL3P38858 249 aa6.13□□□□□ -1.43
snR42snR42 BNI4P53858 892 aa6.12□□□□□ -1.43
snR42snR42 COQ8P27697 501 aa6.11□□□□□ -1.43
snR42snR42 SRC1Q03707 834 aa6.1□□□□□ -1.43
snR42snR42 YML082WQ04533 649 aaKnown RBP6.1□□□□□ -1.43
snR42snR42 RGA2Q06407 1009 aa6.09□□□□□ -1.43
snR42snR42 PTC2P39966 464 aaKnown RBP6.08□□□□□ -1.44
snR42snR42 ILV3P39522 585 aaKnown RBP6.07□□□□□ -1.44
snR42snR42 MPC54Q08550 464 aa6.05□□□□□ -1.44
snR42snR42 NOP53Q12080 455 aaKnown RBP6.04□□□□□ -1.44
snR42snR42 RGA1P39083 1007 aa6.02□□□□□ -1.45
snR42snR42 YGR273CP53329 174 aa6.02□□□□□ -1.45
snR42snR42 TCB3Q03640 1545 aaKnown RBP6.01□□□□□ -1.45
snR42snR42 SWR1Q05471 1514 aa6□□□□□ -1.45
snR42snR42 NMA111P53920 997 aa6□□□□□ -1.45
snR42snR42 DNA2P38859 1522 aa5.99□□□□□ -1.45
snR42snR42 SGS1P35187 1447 aa5.99□□□□□ -1.45
snR42snR42 DPL1Q05567 589 aa5.98□□□□□ -1.45
snR42snR42 SLI15P38283 698 aa5.96□□□□□ -1.46
snR42snR42 TY1B-DR4Q07793 1604 aa5.96□□□□□ -1.46
snR42snR42 RAS1P01119 309 aa5.94□□□□□ -1.46
snR42snR42 KOG1P38873 1557 aa5.93□□□□□ -1.46
snR42snR42 YPR015CQ12531 247 aa5.92□□□□□ -1.46
snR42snR42 ISU2Q12056 156 aa5.91□□□□□ -1.46
snR42snR42 RAM1P22007 431 aa5.9□□□□□ -1.46
snR42snR42 AMS1P22855 1083 aa5.89□□□□□ -1.47
snR42snR42 TRK1P12685 1235 aa5.88□□□□□ -1.47
snR42snR42 GYP1Q08484 637 aa5.87□□□□□ -1.47
snR42snR42 KEX1P09620 729 aa5.86□□□□□ -1.47
snR42snR42 SAS4Q04003 481 aa5.85□□□□□ -1.47
snR42snR42 CDC73Q06697 393 aa5.82□□□□□ -1.48
snR42snR42 SPA2P23201 1466 aaKnown RBP5.8□□□□□ -1.48
snR42snR42 SPT6P23615 1451 aaKnown RBP5.8□□□□□ -1.48
snR42snR42 SDH2P21801 266 aa5.79□□□□□ -1.48
snR42snR42 YEL077CQ3E7X8 1277 aa5.79□□□□□ -1.48
snR42snR42 PDR1P12383 1068 aa5.78□□□□□ -1.48
snR42snR42 HSL1P34244 1518 aa5.78□□□□□ -1.48
snR42snR42 RPP1BP10622 106 aaKnown RBP5.76□□□□□ -1.49
snR42snR42 UBP14P38237 781 aaKnown RBP5.76□□□□□ -1.49
snR42snR42 YLR326WQ06170 240 aaKnown RBP5.76□□□□□ -1.49
snR42snR42 MRF1P30775 413 aaPredicted RBP5.75□□□□□ -1.49
snR42snR42 YPL062WQ02781 134 aa5.73□□□□□ -1.49
snR42snR42 RAD54P32863 898 aa5.72□□□□□ -1.49
snR42snR42 PCS60P38137 543 aaKnown RBP RIP-Chip data5.72□□□□□ -1.49not detected
snR42snR42 VHR2P40041 505 aa5.72□□□□□ -1.49
snR42snR42 SET1P38827 1080 aaKnown RBP5.7□□□□□ -1.5
snR42snR42 BUD20Q08004 166 aaPredicted RBP5.69□□□□□ -1.5
snR42snR42 PRT1P06103 763 aaKnown RBP5.68□□□□□ -1.5
snR42snR42 HIR3P47171 1648 aa5.67□□□□□ -1.5
snR42snR42 ECM5Q03214 1411 aa5.66□□□□□ -1.5
snR42snR42 BRE2P43132 505 aa5.66□□□□□ -1.5
snR42snR42 ERG12P07277 443 aa5.65□□□□□ -1.5
snR42snR42 YRR1Q12172 810 aa5.65□□□□□ -1.5
snR42snR42 PEX21P50091 288 aa5.64□□□□□ -1.51
snR42snR42 GCR2Q01722 534 aa5.64□□□□□ -1.51
snR42snR42 STR2P47164 639 aa5.63□□□□□ -1.51
snR42snR42 TFB4Q12004 338 aa5.62□□□□□ -1.51
snR42snR42 GAP1P19145 602 aaPredicted RBP5.61□□□□□ -1.51
snR42snR42 XRN1P22147 1528 aaKnown RBP5.61□□□□□ -1.51
snR42snR42 KIC1P38692 1080 aa5.61□□□□□ -1.51
snR42snR42 BUD4P47136 1447 aa5.61□□□□□ -1.51
snR42snR42 ISM1P48526 1002 aa5.61□□□□□ -1.51
snR42snR42 YDR090CQ03193 310 aa5.61□□□□□ -1.51
snR42snR42 CSC1Q06538 782 aa5.61□□□□□ -1.51
snR42snR42 AIR1P40507 360 aaKnown RBP5.6□□□□□ -1.51
snR42snR42 THO2P53552 1597 aaKnown RBP5.59□□□□□ -1.51
snR42snR42 NUD1P32336 851 aa5.59□□□□□ -1.51
snR42snR42 GBP2P25555 427 aaKnown RBP RIP-Chip data5.58□□□□□ -1.52not detected
snR42snR42 GAR1P28007 205 aaKnown RBP5.58□□□□□ -1.52
snR42snR42 CST6P40535 587 aa5.58□□□□□ -1.52
snR42snR42 TUM1Q08686 304 aaKnown RBP5.58□□□□□ -1.52
Retrieved 100 of 5,963 RNA–protein pairs in 47.9 ms