RNA–Protein interactions for RNA: YPL065W

VPS28, Transcript of Component of the ESCRT-I complex, yeastyeast

Gene VPS28, Length 729 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS28YPL065W GRE2Q12068 342 aaKnown RBP11.62□□□□□ -0.55
VPS28YPL065W COQ8P27697 501 aa11.57□□□□□ -0.56
VPS28YPL065W ATH1P48016 1211 aa11.56□□□□□ -0.56
VPS28YPL065W PTC3P34221 468 aaKnown RBP11.55□□□□□ -0.56
VPS28YPL065W PTC4P38089 393 aa11.55□□□□□ -0.56
VPS28YPL065W EDS1P38073 919 aa11.54□□□□□ -0.56
VPS28YPL065W YEL023CP39992 682 aa11.54□□□□□ -0.56
VPS28YPL065W DAN4P47179 1161 aa11.53□□□□□ -0.56
VPS28YPL065W GUT1P32190 709 aa11.52□□□□□ -0.57
VPS28YPL065W NOP53Q12080 455 aaKnown RBP11.5□□□□□ -0.57
VPS28YPL065W YDL129WQ07555 291 aa11.44□□□□□ -0.58
VPS28YPL065W SAP30P38429 201 aa11.39□□□□□ -0.59
VPS28YPL065W PML39Q03760 334 aa11.3□□□□□ -0.6
VPS28YPL065W SET1P38827 1080 aaKnown RBP11.28□□□□□ -0.6
VPS28YPL065W NST1P53935 1240 aa11.28□□□□□ -0.6
VPS28YPL065W AI4P03878 556 aa11.27□□□□□ -0.61
VPS28YPL065W SOL3P38858 249 aa11.27□□□□□ -0.61
VPS28YPL065W CHL1P22516 861 aaPredicted RBP11.26□□□□□ -0.61
VPS28YPL065W MPH3P0CE00 602 aa11.25□□□□□ -0.61
VPS28YPL065W PRE3P38624 215 aa11.23□□□□□ -0.61
VPS28YPL065W YGR273CP53329 174 aa11.23□□□□□ -0.61
VPS28YPL065W PEX29Q03370 554 aa11.15□□□□□ -0.62
VPS28YPL065W IFH1P39520 1085 aa11.14□□□□□ -0.63
VPS28YPL065W ELP4Q02884 456 aaKnown RBP11.14□□□□□ -0.63
VPS28YPL065W MID1P41821 548 aa11.13□□□□□ -0.63
VPS28YPL065W BCK2P33306 851 aa11.1□□□□□ -0.63
VPS28YPL065W ILV3P39522 585 aaKnown RBP11.1□□□□□ -0.63
VPS28YPL065W ARH1P48360 493 aa11.1□□□□□ -0.63
VPS28YPL065W KEX1P09620 729 aa11.03□□□□□ -0.64
VPS28YPL065W SLI15P38283 698 aa11.01□□□□□ -0.65
VPS28YPL065W YDR344CQ05510 147 aa11.01□□□□□ -0.65
VPS28YPL065W SPT23P35210 1082 aa11□□□□□ -0.65
VPS28YPL065W HAP5Q02516 242 aa11□□□□□ -0.65
VPS28YPL065W MPC54Q08550 464 aa10.99□□□□□ -0.65
VPS28YPL065W VRP1P37370 817 aa10.95□□□□□ -0.66
VPS28YPL065W UBP14P38237 781 aaKnown RBP10.95□□□□□ -0.66
VPS28YPL065W VHR2P40041 505 aa10.95□□□□□ -0.66
VPS28YPL065W DPL1Q05567 589 aa10.95□□□□□ -0.66
VPS28YPL065W YLR326WQ06170 240 aaKnown RBP10.95□□□□□ -0.66
VPS28YPL065W YPR148CQ06523 435 aa10.95□□□□□ -0.66
VPS28YPL065W BNI4P53858 892 aa10.93□□□□□ -0.66
VPS28YPL065W RAD54P32863 898 aa10.91□□□□□ -0.66
VPS28YPL065W NMA111P53920 997 aa10.91□□□□□ -0.66
VPS28YPL065W RPP1BP10622 106 aaKnown RBP10.9□□□□□ -0.66
VPS28YPL065W XDJ1P39102 459 aa10.89□□□□□ -0.67
VPS28YPL065W PTC2P39966 464 aaKnown RBP10.88□□□□□ -0.67
VPS28YPL065W KIC1P38692 1080 aa10.87□□□□□ -0.67
VPS28YPL065W PCS60P38137 543 aaKnown RBP RIP-Chip data10.86□□□□□ -0.67not detected
VPS28YPL065W REF2P42073 533 aaPredicted RBP10.86□□□□□ -0.67
VPS28YPL065W ISU2Q12056 156 aa10.85□□□□□ -0.67
VPS28YPL065W VPS70P47161 811 aa10.84□□□□□ -0.67
VPS28YPL065W YML082WQ04533 649 aaKnown RBP10.84□□□□□ -0.67
VPS28YPL065W CDC73Q06697 393 aa10.81□□□□□ -0.68
VPS28YPL065W YDR090CQ03193 310 aa10.78□□□□□ -0.68
VPS28YPL065W MAK21Q12176 1025 aaKnown RBP10.76□□□□□ -0.69
VPS28YPL065W DMA1P38823 416 aa10.72□□□□□ -0.69
VPS28YPL065W CKB1P43639 278 aa10.71□□□□□ -0.69
VPS28YPL065W RQC2Q12532 1038 aaKnown RBP10.71□□□□□ -0.69
VPS28YPL065W COX6P00427 148 aa10.69□□□□□ -0.7
VPS28YPL065W PEX21P50091 288 aa10.69□□□□□ -0.7
VPS28YPL065W CSC1Q06538 782 aa10.66□□□□□ -0.7
VPS28YPL065W RAM1P22007 431 aa10.64□□□□□ -0.71
VPS28YPL065W DPS1P04802 557 aaKnown RBP10.63□□□□□ -0.71
VPS28YPL065W TFB4Q12004 338 aa10.63□□□□□ -0.71
VPS28YPL065W YPR015CQ12531 247 aa10.61□□□□□ -0.71
VPS28YPL065W GAP1P19145 602 aaPredicted RBP10.6□□□□□ -0.71
VPS28YPL065W PDR1P12383 1068 aa10.59□□□□□ -0.71
VPS28YPL065W GYP1Q08484 637 aa10.59□□□□□ -0.71
VPS28YPL065W PBS2P08018 668 aa10.58□□□□□ -0.72
VPS28YPL065W SAS10Q12136 610 aaPredicted RBP10.58□□□□□ -0.72
VPS28YPL065W ORC6P38826 435 aa10.57□□□□□ -0.72
VPS28YPL065W YRR1Q12172 810 aa10.57□□□□□ -0.72
VPS28YPL065W SAS4Q04003 481 aa10.55□□□□□ -0.72
VPS28YPL065W TUM1Q08686 304 aaKnown RBP10.54□□□□□ -0.72
VPS28YPL065W MVP1P40959 511 aaKnown RBP10.49□□□□□ -0.73
VPS28YPL065W NPL4P33755 580 aa10.47□□□□□ -0.73
VPS28YPL065W MAM3Q12296 706 aa10.47□□□□□ -0.73
VPS28YPL065W NUD1P32336 851 aa10.46□□□□□ -0.73
VPS28YPL065W RGR1P19263 1082 aa10.44□□□□□ -0.74
VPS28YPL065W PRT1P06103 763 aaKnown RBP10.43□□□□□ -0.74
VPS28YPL065W MRF1P30775 413 aaPredicted RBP10.43□□□□□ -0.74
VPS28YPL065W DSF2P38213 736 aa10.43□□□□□ -0.74
VPS28YPL065W BUD20Q08004 166 aaPredicted RBP10.43□□□□□ -0.74
VPS28YPL065W PSE1P32337 1089 aaKnown RBP10.41□□□□□ -0.74
VPS28YPL065W STR2P47164 639 aa10.41□□□□□ -0.74
VPS28YPL065W YPR109WQ06104 294 aa10.41□□□□□ -0.74
VPS28YPL065W ISM1P48526 1002 aa10.4□□□□□ -0.74
VPS28YPL065W SPB4P25808 606 aaPredicted RBP10.39□□□□□ -0.75
VPS28YPL065W YEL077CQ3E7X8 1277 aa10.38□□□□□ -0.75
VPS28YPL065W AMS1P22855 1083 aa10.37□□□□□ -0.75
VPS28YPL065W CLB5P30283 435 aa10.35□□□□□ -0.75
VPS28YPL065W GCD11P32481 527 aaKnown RBP10.34□□□□□ -0.75
VPS28YPL065W IES2P40154 320 aa10.34□□□□□ -0.75
VPS28YPL065W RAS1P01119 309 aa10.33□□□□□ -0.76
VPS28YPL065W ERG12P07277 443 aa10.3□□□□□ -0.76
VPS28YPL065W SDH2P21801 266 aa10.29□□□□□ -0.76
VPS28YPL065W SPT16P32558 1035 aaKnown RBP10.28□□□□□ -0.76
VPS28YPL065W PAT1P25644 796 aaKnown RBP10.27□□□□□ -0.77
VPS28YPL065W SRC1Q03707 834 aa10.26□□□□□ -0.77
VPS28YPL065W NUP42P49686 430 aaKnown RBP10.25□□□□□ -0.77
Retrieved 100 of 5,963 RNA–protein pairs in 851.4 ms