RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP85	YJR042W	BUD31	P25337	157 aa	Predicted RBP	5.13	□□□□□ -1.59
NUP85	YJR042W	AI2	P03876	854 aa		5.12	□□□□□ -1.59
NUP85	YJR042W	ATG32	P40458	529 aa		5.12	□□□□□ -1.59
NUP85	YJR042W	BIM1	P40013	344 aa		5.12	□□□□□ -1.59
NUP85	YJR042W	YRB30	P53107	440 aa	Predicted RBP	5.12	□□□□□ -1.59
NUP85	YJR042W	DOS2	P54858	310 aa		5.12	□□□□□ -1.59
NUP85	YJR042W	NOB1	Q08444	459 aa	Known RBP	5.12	□□□□□ -1.59
NUP85	YJR042W	SSF1	P38789	453 aa	Predicted RBP	5.11	□□□□□ -1.59
NUP85	YJR042W	MET10	P39692	1035 aa		5.11	□□□□□ -1.59
NUP85	YJR042W	HGH1	P48362	394 aa	Known RBP	5.11	□□□□□ -1.59
NUP85	YJR042W	ERG12	P07277	443 aa		5.1	□□□□□ -1.59
NUP85	YJR042W	CDC27	P38042	758 aa		5.09	□□□□□ -1.59
NUP85	YJR042W	BRN1	P38170	754 aa		5.09	□□□□□ -1.59
NUP85	YJR042W	NUG1	P40010	520 aa	Known RBP	5.09	□□□□□ -1.59
NUP85	YJR042W	HSL1	P34244	1518 aa		5.08	□□□□□ -1.6
NUP85	YJR042W	TPO2	P53283	614 aa		5.08	□□□□□ -1.6
NUP85	YJR042W	UBP10	P53874	792 aa	Predicted RBP	5.08	□□□□□ -1.6
NUP85	YJR042W	MAK11	P20484	414 aa	Known RBP	5.07	□□□□□ -1.6
NUP85	YJR042W	MAK21	Q12176	1025 aa	Known RBP	5.07	□□□□□ -1.6
NUP85	YJR042W	DCD1	P06773	312 aa		5.06	□□□□□ -1.6
NUP85	YJR042W	CPS1	P27614	576 aa		5.06	□□□□□ -1.6
NUP85	YJR042W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	5.06	□□□□□ -1.6	not detected
NUP85	YJR042W	TFC8	Q12308	588 aa		5.06	□□□□□ -1.6
NUP85	YJR042W	SPT6	P23615	1451 aa	Known RBP	5.06	□□□□□ -1.6
NUP85	YJR042W	HO	P09932	586 aa		5.05	□□□□□ -1.6
NUP85	YJR042W	ALD4	P46367	519 aa	Known RBP	5.05	□□□□□ -1.6
NUP85	YJR042W	YJR008W	P47085	338 aa		5.05	□□□□□ -1.6
NUP85	YJR042W	SSA4	P22202	642 aa	Known RBP	5.04	□□□□□ -1.6
NUP85	YJR042W	ALD2	P47771	506 aa		5.04	□□□□□ -1.6
NUP85	YJR042W	YML083C	Q04526	418 aa		5.04	□□□□□ -1.6
NUP85	YJR042W	RRP15	Q06511	250 aa	Predicted RBP	5.04	□□□□□ -1.6
NUP85	YJR042W	TIF1	P10081	395 aa	Known RBP	5.04	□□□□□ -1.6
NUP85	YJR042W	HEM3	P28789	327 aa		5.04	□□□□□ -1.6
NUP85	YJR042W	TTI1	P36097	1038 aa		5.04	□□□□□ -1.6
NUP85	YJR042W	YJL007C	P47080	104 aa		5.04	□□□□□ -1.6
NUP85	YJR042W	KTR1	P27810	393 aa	Known RBP	5.03	□□□□□ -1.6
NUP85	YJR042W	MAP2	P38174	421 aa	Known RBP	5.03	□□□□□ -1.6
NUP85	YJR042W	SLD2	P34252	453 aa		5.02	□□□□□ -1.61
NUP85	YJR042W	REF2	P42073	533 aa	Predicted RBP	5.02	□□□□□ -1.61
NUP85	YJR042W	MRM1	P25270	412 aa		5.01	□□□□□ -1.61
NUP85	YJR042W	COQ8	P27697	501 aa		5.01	□□□□□ -1.61
NUP85	YJR042W	CDC3	P32457	520 aa	Known RBP	5.01	□□□□□ -1.61
NUP85	YJR042W	IPL1	P38991	367 aa		5.01	□□□□□ -1.61
NUP85	YJR042W	MON2	P48563	1636 aa	Predicted RBP	5.01	□□□□□ -1.61
NUP85	YJR042W	HIR3	P47171	1648 aa		5	□□□□□ -1.61
NUP85	YJR042W	COX6	P00427	148 aa		5	□□□□□ -1.61
NUP85	YJR042W	BIO2	P32451	375 aa		5	□□□□□ -1.61
NUP85	YJR042W	PUP1	P25043	261 aa		4.99	□□□□□ -1.61
NUP85	YJR042W	RTS3	P53289	263 aa		4.99	□□□□□ -1.61
NUP85	YJR042W	ATF2	P53296	535 aa		4.99	□□□□□ -1.61
NUP85	YJR042W	HAT1	Q12341	374 aa		4.99	□□□□□ -1.61
NUP85	YJR042W	CST6	P40535	587 aa		4.99	□□□□□ -1.61
NUP85	YJR042W	ATE1	P16639	503 aa		4.98	□□□□□ -1.61
NUP85	YJR042W	EDS1	P38073	919 aa		4.98	□□□□□ -1.61
NUP85	YJR042W	MDG1	P53885	366 aa		4.98	□□□□□ -1.61
NUP85	YJR042W	YAF9	P53930	226 aa		4.97	□□□□□ -1.61
NUP85	YJR042W	XRN1	P22147	1528 aa	Known RBP	4.97	□□□□□ -1.61
NUP85	YJR042W	BCH2	P36122	765 aa		4.97	□□□□□ -1.61
NUP85	YJR042W	YDR090C	Q03193	310 aa		4.97	□□□□□ -1.61
NUP85	YJR042W	UBX5	Q06682	500 aa		4.97	□□□□□ -1.61
NUP85	YJR042W	BUD21	Q08492	214 aa	Predicted RBP	4.97	□□□□□ -1.61
NUP85	YJR042W	GIN4	Q12263	1142 aa		4.97	□□□□□ -1.61
NUP85	YJR042W	SWR1	Q05471	1514 aa		4.96	□□□□□ -1.61
NUP85	YJR042W	SIS1	P25294	352 aa	Known RBP	4.96	□□□□□ -1.62
NUP85	YJR042W	THO2	P53552	1597 aa	Known RBP	4.96	□□□□□ -1.62
NUP85	YJR042W	KEX1	P09620	729 aa		4.96	□□□□□ -1.62
NUP85	YJR042W	VPS29	P38759	282 aa		4.96	□□□□□ -1.62
NUP85	YJR042W	MAG2	Q06436	670 aa	Known RBP	4.96	□□□□□ -1.62
NUP85	YJR042W	SIN3	P22579	1536 aa		4.95	□□□□□ -1.62
NUP85	YJR042W	SKI3	P17883	1432 aa	Known RBP	4.95	□□□□□ -1.62
NUP85	YJR042W	RTG3	P38165	486 aa		4.95	□□□□□ -1.62
NUP85	YJR042W	TIF4632	P39936	914 aa	Known RBP	4.95	□□□□□ -1.62
NUP85	YJR042W	UBP9	P39967	754 aa		4.95	□□□□□ -1.62
NUP85	YJR042W	CSN12	P47130	423 aa		4.95	□□□□□ -1.62
NUP85	YJR042W	OSW7	P43611	510 aa		4.94	□□□□□ -1.62
NUP85	YJR042W	RPL34A	P87262	121 aa	Predicted RBP	4.94	□□□□□ -1.62
NUP85	YJR042W	YPR204W	Q08995	1032 aa		4.94	□□□□□ -1.62
NUP85	YJR042W	REV3	P14284	1504 aa		4.93	□□□□□ -1.62
NUP85	YJR042W	PDR1	P12383	1068 aa		4.93	□□□□□ -1.62
NUP85	YJR042W	ASF1	P32447	279 aa		4.93	□□□□□ -1.62
NUP85	YJR042W	NMD2	P38798	1089 aa	Known RBP	4.93	□□□□□ -1.62
NUP85	YJR042W	FPR4	Q06205	392 aa	Predicted RBP	4.93	□□□□□ -1.62
NUP85	YJR042W	STB3	Q12427	513 aa		4.93	□□□□□ -1.62
NUP85	YJR042W	SSA2	P10592	639 aa	Known RBP	4.92	□□□□□ -1.62
NUP85	YJR042W	RNH70	P53331	553 aa		4.92	□□□□□ -1.62
NUP85	YJR042W	RTG2	P32608	588 aa	Known RBP	4.92	□□□□□ -1.62
NUP85	YJR042W	ITT1	Q04638	464 aa		4.92	□□□□□ -1.62
NUP85	YJR042W	NOP53	Q12080	455 aa	Known RBP	4.92	□□□□□ -1.62
NUP85	YJR042W	WHI5	Q12416	295 aa		4.92	□□□□□ -1.62
NUP85	YJR042W	SSK2	P53599	1579 aa		4.91	□□□□□ -1.62
NUP85	YJR042W	CHD1	P32657	1468 aa		4.91	□□□□□ -1.62
NUP85	YJR042W	TYW1	Q08960	810 aa	Known RBP	4.91	□□□□□ -1.62
NUP85	YJR042W	UBP14	P38237	781 aa	Known RBP	4.9	□□□□□ -1.63
NUP85	YJR042W	EPS1	P40557	701 aa		4.9	□□□□□ -1.63
NUP85	YJR042W	TRL1	P09880	827 aa	Known RBP	4.89	□□□□□ -1.63
NUP85	YJR042W	SUP45	P12385	437 aa	Known RBP	4.89	□□□□□ -1.63
NUP85	YJR042W	PMC1	P38929	1173 aa	Predicted RBP	4.89	□□□□□ -1.63
NUP85	YJR042W	IOC3	P43596	787 aa		4.89	□□□□□ -1.63
NUP85	YJR042W	BBC1	P47068	1157 aa		4.89	□□□□□ -1.63
NUP85	YJR042W	SUB1	P54000	292 aa	Known RBP	4.89	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 55.3 ms