RNA–Protein interactions for RNA: YIL076W

SEC28, Transcript of Epsilon-COP subunit of the coatomer, yeastyeast

Gene SEC28, Length 891 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC28YIL076W NOP53Q12080 455 aaKnown RBP10.31□□□□□ -0.76
SEC28YIL076W YNL035CP53962 389 aaKnown RBP10.29□□□□□ -0.76
SEC28YIL076W YEL023CP39992 682 aa10.27□□□□□ -0.77
SEC28YIL076W DMA1P38823 416 aa10.25□□□□□ -0.77
SEC28YIL076W JIP4Q03361 876 aa10.25□□□□□ -0.77
SEC28YIL076W SEC61P32915 480 aa10.23□□□□□ -0.77
SEC28YIL076W DAN4P47179 1161 aa10.23□□□□□ -0.77
SEC28YIL076W PTC4P38089 393 aa10.21□□□□□ -0.77
SEC28YIL076W NCR1Q12200 1170 aa10.21□□□□□ -0.77
SEC28YIL076W YJL171CP46992 396 aa10.2□□□□□ -0.78
SEC28YIL076W SOL3P38858 249 aa10.19□□□□□ -0.78
SEC28YIL076W NST1P53935 1240 aa10.17□□□□□ -0.78
SEC28YIL076W TFG1P41895 735 aaPredicted RBP10.14□□□□□ -0.79
SEC28YIL076W BMT6Q12291 365 aa10.13□□□□□ -0.79
SEC28YIL076W YGR273CP53329 174 aa10.12□□□□□ -0.79
SEC28YIL076W IFH1P39520 1085 aa10.1□□□□□ -0.79
SEC28YIL076W MPH3P0CE00 602 aa10.08□□□□□ -0.8
SEC28YIL076W YPR148CQ06523 435 aa10.08□□□□□ -0.8
SEC28YIL076W YDL129WQ07555 291 aa10.08□□□□□ -0.8
SEC28YIL076W AI4P03878 556 aa10.07□□□□□ -0.8
SEC28YIL076W ILV3P39522 585 aaKnown RBP10.07□□□□□ -0.8
SEC28YIL076W SAP30P38429 201 aa10.05□□□□□ -0.8
SEC28YIL076W PML39Q03760 334 aa10.05□□□□□ -0.8
SEC28YIL076W VPS70P47161 811 aa10.01□□□□□ -0.81
SEC28YIL076W VHR2P40041 505 aa9.99□□□□□ -0.81
SEC28YIL076W RQC2Q12532 1038 aaKnown RBP9.99□□□□□ -0.81
SEC28YIL076W MID1P41821 548 aa9.98□□□□□ -0.81
SEC28YIL076W KEX1P09620 729 aa9.97□□□□□ -0.81
SEC28YIL076W YLR326WQ06170 240 aaKnown RBP9.96□□□□□ -0.82
SEC28YIL076W UBP14P38237 781 aaKnown RBP9.95□□□□□ -0.82
SEC28YIL076W SLI15P38283 698 aa9.92□□□□□ -0.82
SEC28YIL076W REF2P42073 533 aaPredicted RBP9.91□□□□□ -0.82
SEC28YIL076W SAS10Q12136 610 aaPredicted RBP9.91□□□□□ -0.82
SEC28YIL076W PEX29Q03370 554 aa9.9□□□□□ -0.82
SEC28YIL076W YDR344CQ05510 147 aa9.9□□□□□ -0.82
SEC28YIL076W RAD54P32863 898 aa9.87□□□□□ -0.83
SEC28YIL076W PCS60P38137 543 aaKnown RBP RIP-Chip data9.86□□□□□ -0.83not detected
SEC28YIL076W YDR090CQ03193 310 aa9.86□□□□□ -0.83
SEC28YIL076W PRE3P38624 215 aa9.85□□□□□ -0.83
SEC28YIL076W MPC54Q08550 464 aa9.84□□□□□ -0.83
SEC28YIL076W CHL1P22516 861 aaPredicted RBP9.82□□□□□ -0.84
SEC28YIL076W CKB1P43639 278 aa9.82□□□□□ -0.84
SEC28YIL076W ELP4Q02884 456 aaKnown RBP9.82□□□□□ -0.84
SEC28YIL076W ARH1P48360 493 aa9.81□□□□□ -0.84
SEC28YIL076W KIC1P38692 1080 aa9.8□□□□□ -0.84
SEC28YIL076W DPL1Q05567 589 aa9.78□□□□□ -0.84
SEC28YIL076W CDC73Q06697 393 aa9.78□□□□□ -0.84
SEC28YIL076W HAP5Q02516 242 aa9.76□□□□□ -0.85
SEC28YIL076W PBS2P08018 668 aa9.75□□□□□ -0.85
SEC28YIL076W MAK21Q12176 1025 aaKnown RBP9.75□□□□□ -0.85
SEC28YIL076W COX6P00427 148 aa9.74□□□□□ -0.85
SEC28YIL076W NMA111P53920 997 aa9.74□□□□□ -0.85
SEC28YIL076W RPP1BP10622 106 aaKnown RBP9.69□□□□□ -0.86
SEC28YIL076W SPT23P35210 1082 aa9.69□□□□□ -0.86
SEC28YIL076W BNI4P53858 892 aa9.68□□□□□ -0.86
SEC28YIL076W ISU2Q12056 156 aa9.68□□□□□ -0.86
SEC28YIL076W BCK2P33306 851 aa9.65□□□□□ -0.86
SEC28YIL076W DSF2P38213 736 aa9.64□□□□□ -0.87
SEC28YIL076W ORC6P38826 435 aa9.64□□□□□ -0.87
SEC28YIL076W SPB4P25808 606 aaPredicted RBP9.63□□□□□ -0.87
SEC28YIL076W MAM3Q12296 706 aa9.63□□□□□ -0.87
SEC28YIL076W PTC2P39966 464 aaKnown RBP9.62□□□□□ -0.87
SEC28YIL076W GAP1P19145 602 aaPredicted RBP9.61□□□□□ -0.87
SEC28YIL076W VRP1P37370 817 aa9.6□□□□□ -0.87
SEC28YIL076W CSC1Q06538 782 aa9.59□□□□□ -0.87
SEC28YIL076W IES2P40154 320 aa9.58□□□□□ -0.88
SEC28YIL076W PEX21P50091 288 aa9.58□□□□□ -0.88
SEC28YIL076W YML082WQ04533 649 aaKnown RBP9.57□□□□□ -0.88
SEC28YIL076W PDR1P12383 1068 aa9.56□□□□□ -0.88
SEC28YIL076W TFB4Q12004 338 aa9.55□□□□□ -0.88
SEC28YIL076W RAM1P22007 431 aa9.54□□□□□ -0.88
SEC28YIL076W YRR1Q12172 810 aa9.54□□□□□ -0.88
SEC28YIL076W YPR015CQ12531 247 aa9.53□□□□□ -0.88
SEC28YIL076W MVP1P40959 511 aaKnown RBP9.52□□□□□ -0.89
SEC28YIL076W TUM1Q08686 304 aaKnown RBP9.52□□□□□ -0.89
SEC28YIL076W RGR1P19263 1082 aa9.5□□□□□ -0.89
SEC28YIL076W NUP42P49686 430 aaKnown RBP9.5□□□□□ -0.89
SEC28YIL076W PSE1P32337 1089 aaKnown RBP9.48□□□□□ -0.89
SEC28YIL076W XDJ1P39102 459 aa9.47□□□□□ -0.89
SEC28YIL076W YPR109WQ06104 294 aa9.46□□□□□ -0.9
SEC28YIL076W DIT2P21595 489 aa9.45□□□□□ -0.9
SEC28YIL076W NUD1P32336 851 aa9.43□□□□□ -0.9
SEC28YIL076W STR2P47164 639 aa9.4□□□□□ -0.9
SEC28YIL076W ISM1P48526 1002 aa9.38□□□□□ -0.91
SEC28YIL076W BUD20Q08004 166 aaPredicted RBP9.37□□□□□ -0.91
SEC28YIL076W GYP1Q08484 637 aa9.37□□□□□ -0.91
SEC28YIL076W CLB5P30283 435 aa9.35□□□□□ -0.91
SEC28YIL076W NPL4P33755 580 aa9.35□□□□□ -0.91
SEC28YIL076W TEA1P47988 759 aa9.32□□□□□ -0.92
SEC28YIL076W PRT1P06103 763 aaKnown RBP9.31□□□□□ -0.92
SEC28YIL076W YNR021WP53723 404 aaKnown RBP9.31□□□□□ -0.92
SEC28YIL076W TY1A-DR4O74302 440 aa9.29□□□□□ -0.92
SEC28YIL076W TY1A-HP0C2I4 478 aaKnown RBP9.29□□□□□ -0.92
SEC28YIL076W TY1A-AP0CX57 440 aa9.29□□□□□ -0.92
SEC28YIL076W TY1A-PR1P0CX58 440 aa9.29□□□□□ -0.92
SEC28YIL076W TY1A-ORP0CX59 440 aa9.29□□□□□ -0.92
SEC28YIL076W TY1A-PR2P0CX60 440 aa9.29□□□□□ -0.92
SEC28YIL076W TY1A-DR5P0CX65 440 aa9.29□□□□□ -0.92
SEC28YIL076W TY1A-ER2P0CX66 440 aa9.29□□□□□ -0.92
SEC28YIL076W TY1A-GR3P0CX67 440 aa9.29□□□□□ -0.92
Retrieved 100 of 5,963 RNA–protein pairs in 13.9 ms