RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeastyeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USE1YGL098W HTA1P04911 132 aaKnown RBP5.34□□□□□ -1.55
USE1YGL098W HTA2P04912 132 aa5.34□□□□□ -1.55
USE1YGL098W YFR006WP43590 535 aa5.34□□□□□ -1.55
USE1YGL098W VPS29P38759 282 aa5.32□□□□□ -1.56
USE1YGL098W TFA1P36100 482 aa5.31□□□□□ -1.56
USE1YGL098W ARH1P48360 493 aa5.31□□□□□ -1.56
USE1YGL098W GYP5Q12344 894 aa5.31□□□□□ -1.56
USE1YGL098W STS1P38637 319 aa5.3□□□□□ -1.56
USE1YGL098W DCW1P36091 449 aa5.29□□□□□ -1.56
USE1YGL098W PML39Q03760 334 aa5.29□□□□□ -1.56
USE1YGL098W RAS1P01119 309 aa5.27□□□□□ -1.57
USE1YGL098W SPT23P35210 1082 aa5.25□□□□□ -1.57
USE1YGL098W TRK1P12685 1235 aa5.22□□□□□ -1.57
USE1YGL098W YML082WQ04533 649 aaKnown RBP5.17□□□□□ -1.58
USE1YGL098W CST9Q06032 482 aa5.15□□□□□ -1.59
USE1YGL098W RCR1P38212 213 aa5.14□□□□□ -1.59
USE1YGL098W MID1P41821 548 aa5.14□□□□□ -1.59
USE1YGL098W RTG3P38165 486 aa5.12□□□□□ -1.59
USE1YGL098W BNI4P53858 892 aa5.11□□□□□ -1.59
USE1YGL098W HAP5Q02516 242 aa5.09□□□□□ -1.59
USE1YGL098W PTC2P39966 464 aaKnown RBP5.07□□□□□ -1.6
USE1YGL098W AMS1P22855 1083 aa5.05□□□□□ -1.6
USE1YGL098W PEX29Q03370 554 aa5.02□□□□□ -1.61
USE1YGL098W SSP1P38871 571 aa5□□□□□ -1.61
USE1YGL098W GAR1P28007 205 aaKnown RBP4.99□□□□□ -1.61
USE1YGL098W NST1P53935 1240 aa4.99□□□□□ -1.61
USE1YGL098W GRE2Q12068 342 aaKnown RBP4.97□□□□□ -1.61
USE1YGL098W GBP2P25555 427 aaKnown RBP RIP-Chip data4.95□□□□□ -1.62not detected
USE1YGL098W MGA2P40578 1113 aa4.95□□□□□ -1.62
USE1YGL098W ARP8Q12386 881 aaKnown RBP RIP-Chip data4.93□□□□□ -1.62not detected
USE1YGL098W YPR015CQ12531 247 aa4.93□□□□□ -1.62
USE1YGL098W SDH2P21801 266 aa4.9□□□□□ -1.63
USE1YGL098W SOL3P38858 249 aa4.9□□□□□ -1.63
USE1YGL098W BRE2P43132 505 aa4.89□□□□□ -1.63
USE1YGL098W RQC2Q12532 1038 aaKnown RBP4.89□□□□□ -1.63
USE1YGL098W MPC54Q08550 464 aa4.88□□□□□ -1.63
USE1YGL098W AI4P03878 556 aa4.87□□□□□ -1.63
USE1YGL098W MPH3P0CE00 602 aa4.87□□□□□ -1.63
USE1YGL098W GUT1P32190 709 aa4.87□□□□□ -1.63
USE1YGL098W EDS1P38073 919 aa4.87□□□□□ -1.63
USE1YGL098W ILV3P39522 585 aaKnown RBP4.87□□□□□ -1.63
USE1YGL098W RAM1P22007 431 aa4.86□□□□□ -1.63
USE1YGL098W NMA111P53920 997 aa4.86□□□□□ -1.63
USE1YGL098W ATH1P48016 1211 aa4.84□□□□□ -1.63
USE1YGL098W GYP1Q08484 637 aa4.84□□□□□ -1.63
USE1YGL098W GCR2Q01722 534 aa4.83□□□□□ -1.64
USE1YGL098W MTC5Q03897 1148 aa4.82□□□□□ -1.64
USE1YGL098W PTC3P34221 468 aaKnown RBP4.81□□□□□ -1.64
USE1YGL098W MIF2P35201 549 aa4.79□□□□□ -1.64
USE1YGL098W YEL077CQ3E7X8 1277 aa4.79□□□□□ -1.64
USE1YGL098W MET22P32179 357 aa4.77□□□□□ -1.65
USE1YGL098W SAS4Q04003 481 aa4.77□□□□□ -1.65
USE1YGL098W RAM2P29703 316 aa4.75□□□□□ -1.65
USE1YGL098W AIR1P40507 360 aaKnown RBP4.74□□□□□ -1.65
USE1YGL098W NOP2P40991 618 aaKnown RBP4.74□□□□□ -1.65
USE1YGL098W DPL1Q05567 589 aa4.73□□□□□ -1.65
USE1YGL098W ENV9Q08651 330 aa4.73□□□□□ -1.65
USE1YGL098W MAK11P20484 414 aaKnown RBP4.71□□□□□ -1.66
USE1YGL098W YDL176WQ12027 708 aa4.71□□□□□ -1.66
USE1YGL098W COQ8P27697 501 aa4.69□□□□□ -1.66
USE1YGL098W SLI15P38283 698 aa4.67□□□□□ -1.66
USE1YGL098W CLA4P48562 842 aa4.67□□□□□ -1.66
USE1YGL098W YGR273CP53329 174 aa4.66□□□□□ -1.66
USE1YGL098W ISU2Q12056 156 aa4.66□□□□□ -1.66
USE1YGL098W MRF1P30775 413 aaPredicted RBP4.65□□□□□ -1.67
USE1YGL098W YDR444WQ04093 687 aa4.63□□□□□ -1.67
USE1YGL098W PDR1P12383 1068 aa4.61□□□□□ -1.67
USE1YGL098W CAB3P36076 571 aa4.6□□□□□ -1.67
USE1YGL098W LCB5Q06147 687 aaKnown RBP4.57□□□□□ -1.68
USE1YGL098W CDC73Q06697 393 aa4.57□□□□□ -1.68
USE1YGL098W CDC4P07834 779 aa4.56□□□□□ -1.68
USE1YGL098W CST6P40535 587 aa4.56□□□□□ -1.68
USE1YGL098W EBP2P36049 427 aaKnown RBP4.55□□□□□ -1.68
USE1YGL098W SPA2P23201 1466 aaKnown RBP4.55□□□□□ -1.68
USE1YGL098W SKI3P17883 1432 aaKnown RBP4.55□□□□□ -1.68
USE1YGL098W ERG12P07277 443 aa4.53□□□□□ -1.68
USE1YGL098W KEX1P09620 729 aa4.52□□□□□ -1.69
USE1YGL098W LAM6Q08001 693 aa4.51□□□□□ -1.69
USE1YGL098W BUD20Q08004 166 aaPredicted RBP4.51□□□□□ -1.69
USE1YGL098W PRT1P06103 763 aaKnown RBP4.48□□□□□ -1.69
USE1YGL098W NOP53Q12080 455 aaKnown RBP4.46□□□□□ -1.7
USE1YGL098W TRK2P28584 889 aa4.45□□□□□ -1.7
USE1YGL098W UBP14P38237 781 aaKnown RBP4.45□□□□□ -1.7
USE1YGL098W YLR326WQ06170 240 aaKnown RBP4.45□□□□□ -1.7
USE1YGL098W PCS60P38137 543 aaKnown RBP RIP-Chip data4.43□□□□□ -1.7 RIP-Chip
USE1YGL098W SGS1P35187 1447 aa4.42□□□□□ -1.7
USE1YGL098W SSN2P38931 1420 aa4.42□□□□□ -1.7
USE1YGL098W NRD1P53617 575 aaKnown RBP RIP-Chip data4.42□□□□□ -1.7not detected
USE1YGL098W STR2P47164 639 aa4.41□□□□□ -1.7
USE1YGL098W SIS2P36024 562 aa4.4□□□□□ -1.71
USE1YGL098W RRD1P40454 393 aaKnown RBP4.4□□□□□ -1.71
USE1YGL098W ISM1P48526 1002 aa4.4□□□□□ -1.71
USE1YGL098W DMA1P38823 416 aa4.39□□□□□ -1.71
USE1YGL098W FRK1Q03002 865 aaPredicted RBP4.39□□□□□ -1.71
USE1YGL098W HED1Q03937 162 aa4.39□□□□□ -1.71
USE1YGL098W VHR2P40041 505 aa4.38□□□□□ -1.71
USE1YGL098W URN1Q06525 465 aaKnown RBP4.38□□□□□ -1.71
USE1YGL098W ACO2P39533 789 aa4.37□□□□□ -1.71
USE1YGL098W LSB3P43603 459 aaKnown RBP4.37□□□□□ -1.71
USE1YGL098W CAF120P53836 1060 aa4.36□□□□□ -1.71
Retrieved 100 of 5,963 RNA–protein pairs in 11.6 ms