RNA–Protein interactions for RNA: YER100W

UBC6, Transcript of Ubiquitin-conjugating enzyme involved in ERAD, yeastyeast

Gene UBC6, Length 753 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBC6YER100W GUA1P38625 525 aaKnown RBP8.03□□□□□ -1.12
UBC6YER100W FKH1P40466 484 aa8.03□□□□□ -1.12
UBC6YER100W YJL171CP46992 396 aa8.03□□□□□ -1.12
UBC6YER100W EDS1P38073 919 aa8.02□□□□□ -1.13
UBC6YER100W MIF2P35201 549 aa8.01□□□□□ -1.13
UBC6YER100W ATF2P53296 535 aa7.99□□□□□ -1.13
UBC6YER100W STS1P38637 319 aa7.98□□□□□ -1.13
UBC6YER100W NSR1P27476 414 aaKnown RBP RIP-Chip data7.95□□□□□ -1.14not detected
UBC6YER100W PTC3P34221 468 aaKnown RBP7.94□□□□□ -1.14
UBC6YER100W DBP1P24784 617 aaKnown RBP7.93□□□□□ -1.14
UBC6YER100W YAP5P40574 245 aa7.92□□□□□ -1.14
UBC6YER100W TIF11P38912 153 aaKnown RBP7.91□□□□□ -1.14
UBC6YER100W TFB3Q03290 321 aa7.91□□□□□ -1.14
UBC6YER100W SSA2P10592 639 aaKnown RBP7.89□□□□□ -1.15
UBC6YER100W BRL1P38770 471 aa7.89□□□□□ -1.15
UBC6YER100W YDR090CQ03193 310 aa7.88□□□□□ -1.15
UBC6YER100W YFR006WP43590 535 aa7.87□□□□□ -1.15
UBC6YER100W SSA1P10591 642 aaKnown RBP7.86□□□□□ -1.15
UBC6YER100W UBP14P38237 781 aaKnown RBP7.86□□□□□ -1.15
UBC6YER100W NOP8Q08287 484 aaPredicted RBP7.86□□□□□ -1.15
UBC6YER100W PSE1P32337 1089 aaKnown RBP7.85□□□□□ -1.15
UBC6YER100W GEF1P37020 779 aa7.83□□□□□ -1.16
UBC6YER100W YML020WQ03722 664 aa7.83□□□□□ -1.16
UBC6YER100W LDB19Q12502 818 aa7.83□□□□□ -1.16
UBC6YER100W SUB2Q07478 446 aaKnown RBP7.82□□□□□ -1.16
UBC6YER100W VHR2P40041 505 aa7.81□□□□□ -1.16
UBC6YER100W YLR326WQ06170 240 aaKnown RBP7.81□□□□□ -1.16
UBC6YER100W BMT6Q12291 365 aa7.81□□□□□ -1.16
UBC6YER100W CSN12P47130 423 aa7.8□□□□□ -1.16
UBC6YER100W PKC1P24583 1151 aa7.79□□□□□ -1.16
UBC6YER100W GUT1P32190 709 aa7.79□□□□□ -1.16
UBC6YER100W GTT3P39996 337 aa7.79□□□□□ -1.16
UBC6YER100W VMA1P17255 1071 aaKnown RBP7.77□□□□□ -1.17
UBC6YER100W KIC1P38692 1080 aa7.77□□□□□ -1.17
UBC6YER100W SLX8P40072 274 aa7.77□□□□□ -1.17
UBC6YER100W ULI1P43604 169 aa7.77□□□□□ -1.17
UBC6YER100W ATH1P48016 1211 aa7.77□□□□□ -1.17
UBC6YER100W IOC2Q12072 812 aa7.77□□□□□ -1.17
UBC6YER100W GLN1P32288 370 aaKnown RBP7.76□□□□□ -1.17
UBC6YER100W BIM1P40013 344 aa7.76□□□□□ -1.17
UBC6YER100W GRE2Q12068 342 aaKnown RBP7.76□□□□□ -1.17
UBC6YER100W YGR273CP53329 174 aa7.75□□□□□ -1.17
UBC6YER100W RAD54P32863 898 aa7.74□□□□□ -1.17
UBC6YER100W SSA4P22202 642 aaKnown RBP7.73□□□□□ -1.17
UBC6YER100W YJL007CP47080 104 aa7.72□□□□□ -1.17
UBC6YER100W SAM3Q08986 587 aa7.72□□□□□ -1.17
UBC6YER100W KEX1P09620 729 aa7.71□□□□□ -1.18
UBC6YER100W PCS60P38137 543 aaKnown RBP RIP-Chip data7.71□□□□□ -1.18not detected
UBC6YER100W ORC6P38826 435 aa7.71□□□□□ -1.18
UBC6YER100W ATG32P40458 529 aa7.71□□□□□ -1.18
UBC6YER100W TEA1P47988 759 aa7.71□□□□□ -1.18
UBC6YER100W PIB1Q06651 286 aa7.71□□□□□ -1.18
UBC6YER100W KTR1P27810 393 aaKnown RBP7.69□□□□□ -1.18
UBC6YER100W CLB5P30283 435 aa7.69□□□□□ -1.18
UBC6YER100W AIM44Q99299 758 aa7.69□□□□□ -1.18
UBC6YER100W RPL34BP40525 121 aaKnown RBP7.67□□□□□ -1.18
UBC6YER100W TIF1P10081 395 aaKnown RBP7.66□□□□□ -1.18
UBC6YER100W SOL3P38858 249 aa7.66□□□□□ -1.18
UBC6YER100W CSE4P36012 229 aa7.65□□□□□ -1.18
UBC6YER100W YBL036CP38197 257 aa7.64□□□□□ -1.19
UBC6YER100W RGR1P19263 1082 aa7.63□□□□□ -1.19
UBC6YER100W HST2P53686 357 aa7.63□□□□□ -1.19
UBC6YER100W TTI1P36097 1038 aa7.62□□□□□ -1.19
UBC6YER100W NST1P53935 1240 aa7.62□□□□□ -1.19
UBC6YER100W GYP5Q12344 894 aa7.62□□□□□ -1.19
UBC6YER100W GAP1P19145 602 aaPredicted RBP7.6□□□□□ -1.19
UBC6YER100W BIO2P32451 375 aa7.6□□□□□ -1.19
UBC6YER100W SLD2P34252 453 aa7.6□□□□□ -1.19
UBC6YER100W MVP1P40959 511 aaKnown RBP7.6□□□□□ -1.19
UBC6YER100W TYW1Q08960 810 aaKnown RBP7.59□□□□□ -1.19
UBC6YER100W ERG12P07277 443 aa7.58□□□□□ -1.2
UBC6YER100W RTG1P32607 177 aa7.58□□□□□ -1.2
UBC6YER100W SIS2P36024 562 aa7.58□□□□□ -1.2
UBC6YER100W ORC1P54784 914 aaPredicted RBP7.58□□□□□ -1.2
UBC6YER100W AI4P03878 556 aa7.57□□□□□ -1.2
UBC6YER100W CPS1P27614 576 aa7.57□□□□□ -1.2
UBC6YER100W CDC3P32457 520 aaKnown RBP7.57□□□□□ -1.2
UBC6YER100W RTG2P32608 588 aaKnown RBP7.57□□□□□ -1.2
UBC6YER100W MRX12P47084 519 aa7.57□□□□□ -1.2
UBC6YER100W FPK1P53739 893 aa7.57□□□□□ -1.2
UBC6YER100W NIS1P53939 407 aa7.57□□□□□ -1.2
UBC6YER100W CSC1Q06538 782 aa7.57□□□□□ -1.2
UBC6YER100W MPH3P0CE00 602 aa7.56□□□□□ -1.2
UBC6YER100W RPL34AP87262 121 aaPredicted RBP7.56□□□□□ -1.2
UBC6YER100W YPR204WQ08995 1032 aa7.56□□□□□ -1.2
UBC6YER100W RAD59Q12223 238 aa7.56□□□□□ -1.2
UBC6YER100W SUP45P12385 437 aaKnown RBP7.55□□□□□ -1.2
UBC6YER100W SPT5P27692 1063 aaKnown RBP7.55□□□□□ -1.2
UBC6YER100W NOB1Q08444 459 aaKnown RBP7.55□□□□□ -1.2
UBC6YER100W MMP1Q12372 583 aa7.55□□□□□ -1.2
UBC6YER100W RPP1BP10622 106 aaKnown RBP7.54□□□□□ -1.2
UBC6YER100W YMR196WQ04336 1088 aa7.54□□□□□ -1.2
UBC6YER100W NCR1Q12200 1170 aa7.54□□□□□ -1.2
UBC6YER100W SIT4P20604 311 aa7.53□□□□□ -1.2
UBC6YER100W SSF1P38789 453 aaPredicted RBP7.52□□□□□ -1.21
UBC6YER100W NOP7P53261 605 aaKnown RBP7.52□□□□□ -1.21
UBC6YER100W PKH3Q03306 898 aaPredicted RBP7.52□□□□□ -1.21
UBC6YER100W RGA2Q06407 1009 aa7.52□□□□□ -1.21
UBC6YER100W TRP5P00931 707 aaKnown RBP7.51□□□□□ -1.21
UBC6YER100W SET4P42948 560 aa7.51□□□□□ -1.21
Retrieved 100 of 5,963 RNA–protein pairs in 268.3 ms